Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008922

Physical Location & Seq

Genomic Coordinates Reverse (-)

6810045 .. 6812168

Gene Structure 2124 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g11540.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 684 bp

ATGGAACGGGGAGGTTTCCACGGCTACCAAAAGACCCAAAATGCCAGCTCCGGGCTGACACTATCGGAGATCAACATGAAGCTGGCTGAGATTAACTACTCCACCAAGAATAACGCTGCTATCACAAACAATGGTGGTGCTACTGATGATAACGAATGCACCGTGCGAGAGCAGGACCGTTTCATGCCGATAGCCAATGTGATCAGAATTATGCGCAAGATCCTGCCCCCGCATGCCAAGATCTCAGAAGACGCCAAGGAAACAATCCAAGAGTGTGTCTCCGAGTACATCAGCTTCATCACAGGAGAGGCCAAGCGTTGCCAGCGCGAGCAGCGCAAGACAATTACTGCCGAAGACGTTTTGTGGGCAATGAGCAAGCTGGGGTTCGATGACTACATCGAGCCTCTCACTCTCTACCTCCACCGCTTCCGTGAGATGGAGGGTGATCGTGGCTCCATGAGGGCCGAGTCGACTTTGATCAAGACTACTGGTGGTACTAGGGCAGCAATGACTGCGGCAGAATACCATGCAGCAGCTGCAGCAGGCTCTTTCGCAGCTGGCTTTGCTCCATTTCATCATCACCATGGTTTTTTCGGATACTTGAAGAATGGTGCTGGTACATCTTTGTCCCATCAGGCACTGGCTAATGGTGATCACCTGCAGGCATCATCACATTCCCAGTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0033613 GO:0033993 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

228

Amino Acids

25.0

Weight (kDa)

6.59

Isoelectric Point (pI)

32.53

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	50 - 124	1e-05	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	61 - 124	1e-22	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47670 AT5G47670 AT5G47670
fragaria_vesca	FvH4_3g00320 FvH4_3g00320 FvH4_3g11540
malus_domestica	MD05G1361600.v1.1 MD10G1339000.v1.1
prunus_persica	Prupe.4G003800_v2.0.a1 Prupe.4G003800_v2.0.a1
pyrus_communis	pycom05g32810 pycom10g28870
rosa_chinensis	RchiOBHm_Chr5g0000501
rosa_laevigata	RLG00000030872
rosa_multiflora	Rmu_sc0003949.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075680
rosa_rugosa	Rorug04G0384300
rosa_samantha	Rh5AG004100 Rh5BG005500 Rh5CG004500 Rh5DG004400
rosa_wichuraiana	Rw5G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	666
Acc16I	TGCGCA	1 cut(s)	215
Acc36I	ACCTGC	1 cut(s)	666
AccI	GTMKAC	1 cut(s)	470
AccII	CGCG	1 cut(s)	327
AciI	CCGC	3 cut(s)	230, 424, 515
AclWI	GGATC	1 cut(s)	214
AcyI	GRCGYC	1 cut(s)	252
AfaI	GTAC	3 cut(s)	287, 496, 619
AfiI	CCNNNNNNNGG	2 cut(s)	51, 436
AgsI	TTSAA	1 cut(s)	604
AluBI	AGCT	6 cut(s)	48, 82, 294, 379, 536, 557
AluI	AGCT	6 cut(s)	48, 82, 294, 379, 536, 557
Alw26I	GTCTC	1 cut(s)	283
AlwI	GGATC	1 cut(s)	214
AlwNI	CAGNNNCTG	2 cut(s)	536, 640
AoxI	GGCC	2 cut(s)	309, 462
ApeKI	GCWGC	8 cut(s)	116, 331, 503, 530, 533, 536, 539, 554
AspLEI	GCGC	3 cut(s)	216, 327, 336
AspS9I	GGNCC	2 cut(s)	175, 462
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	4 cut(s)	455, 572, 647, 662
AvaII	GGWCC	1 cut(s)	175
BarI	GAAGNNNNNNTAC	2 cut(s)	278, 310
BbsI	GAAGAC	2 cut(s)	255, 360
BbvI	GCAGC	8 cut(s)	103, 343, 515, 523, 542, 545, 551, 566
BccI	CCATC	2 cut(s)	430, 639
BceAI	ACGGC	1 cut(s)	37
BciVI	GTATCC	1 cut(s)	590
BclI	TGATCA	3 cut(s)	201, 477, 652
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	1 cut(s)	283
BfaI	CTAG	1 cut(s)	498
BfmI	CTRYAG	2 cut(s)	537, 659
BfuAI	ACCTGC	1 cut(s)	666
BfuI	GTATCC	1 cut(s)	590
BglII	AGATCT	1 cut(s)	240
BisI	GCNGC	9 cut(s)	117, 332, 504, 516, 531, 534, 537, 540, 555
BlsI	GCNGC	9 cut(s)	118, 333, 505, 517, 532, 535, 538, 541, 556
Bme1390I	CCNGG	1 cut(s)	52
Bme18I	GGWCC	1 cut(s)	175
BmgT120I	GGNCC	2 cut(s)	175, 462
BmiI	GGNNCC	1 cut(s)	454
BmrFI	CCNGG	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	673
BmsI	GCATC	1 cut(s)	674
BmuI	ACTGGG	1 cut(s)	673
BpiI	GAAGAC	2 cut(s)	255, 360
BplI	GAGNNNNNCTC	2 cut(s)	263, 295
BpuMI	CCSGG	1 cut(s)	52
BsaHI	GRCGYC	1 cut(s)	252
BsaJI	CCNNGG	3 cut(s)	19, 255, 583
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 436
Bse1I	ACTGG	3 cut(s)	493, 645, 679
Bse3DI	GCAATG	2 cut(s)	375, 513
BseDI	CCNNGG	3 cut(s)	19, 255, 583
BseLI	CCNNNNNNNGG	2 cut(s)	51, 436
BseMI	GCAATG	2 cut(s)	375, 513
BseMII	CTCAG	2 cut(s)	78, 258
BseNI	ACTGG	3 cut(s)	493, 645, 679
BseXI	GCAGC	8 cut(s)	103, 343, 515, 523, 542, 545, 551, 566
BseYI	CCCAGC	1 cut(s)	379
Bsh1236I	CGCG	1 cut(s)	327
BshFI	GGCC	2 cut(s)	311, 464
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	613
BslI	CCNNNNNNNGG	2 cut(s)	51, 436
BsmAI	GTCTC	1 cut(s)	283
BsmFI	GGGAC	1 cut(s)	613
BsmI	GAATGC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	311, 464
Bsp143I	GATC	7 cut(s)	69, 201, 219, 240, 445, 477, 652
Bsp19I	CCATGG	1 cut(s)	583
BspACI	CCGC	3 cut(s)	230, 424, 515
BspANI	GGCC	2 cut(s)	311, 464
BspCNI	CTCAG	2 cut(s)	79, 257
BspFNI	CGCG	1 cut(s)	327
BspLI	GGNNCC	1 cut(s)	454
BspMAI	CTGCAG	2 cut(s)	541, 663
BspMI	ACCTGC	1 cut(s)	666
BspPI	GGATC	1 cut(s)	214
BsrDI	GCAATG	2 cut(s)	375, 513
BsrI	ACTGG	3 cut(s)	493, 645, 679
BssECI	CCNNGG	3 cut(s)	19, 255, 583
BssMI	GATC	7 cut(s)	69, 201, 219, 240, 445, 477, 652
BssNI	GRCGYC	1 cut(s)	252
BssT1I	CCWWGG	2 cut(s)	255, 583
Bst4CI	ACNGT	2 cut(s)	163, 179
BstACI	GRCGYC	1 cut(s)	252
BstAPI	GCANNNNNTGC	2 cut(s)	512, 536
BstC8I	GCNNGC	9 cut(s)	46, 84, 234, 323, 329, 377, 544, 559, 663
BstDEI	CTNAG	2 cut(s)	87, 244
BstDSI	CCRYGG	2 cut(s)	19, 583
BstFNI	CGCG	1 cut(s)	327
BstHHI	GCGC	3 cut(s)	216, 327, 336
BstKTI	GATC	7 cut(s)	72, 204, 222, 243, 448, 480, 655
BstMAI	GTCTC	1 cut(s)	283
BstMBI	GATC	7 cut(s)	69, 201, 219, 240, 445, 477, 652
BstMWI	GCNNNNNNNGC	7 cut(s)	322, 331, 333, 512, 536, 539, 563
BstNSI	RCATGY	1 cut(s)	236
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	2 cut(s)	537, 659
BstUI	CGCG	1 cut(s)	327
BstV1I	GCAGC	8 cut(s)	103, 343, 515, 523, 542, 545, 551, 566
BstV2I	GAAGAC	2 cut(s)	255, 360
BstX2I	RGATCY	2 cut(s)	219, 240
BstYI	RGATCY	2 cut(s)	219, 240
BsuI	GTATCC	1 cut(s)	590
BsuRI	GGCC	2 cut(s)	311, 464
BtgI	CCRYGG	2 cut(s)	19, 583
BtsIMutI	CAGTG	1 cut(s)	638
BveI	ACCTGC	1 cut(s)	666
Cac8I	GCNNGC	9 cut(s)	46, 84, 234, 323, 329, 377, 544, 559, 663
CaiI	CAGNNNCTG	2 cut(s)	536, 640
CfoI	GCGC	3 cut(s)	216, 327, 336
Cfr13I	GGNCC	2 cut(s)	175, 462
CseI	GACGC	1 cut(s)	260
Csp6I	GTAC	3 cut(s)	286, 495, 618
CviAII	CATG	6 cut(s)	76, 184, 233, 457, 527, 584
CviQI	GTAC	3 cut(s)	286, 495, 618
DdeI	CTNAG	2 cut(s)	87, 244
DpnI	GATC	7 cut(s)	71, 203, 221, 242, 447, 479, 654
DpnII	GATC	7 cut(s)	69, 201, 219, 240, 445, 477, 652
Eco130I	CCWWGG	2 cut(s)	255, 583
Eco47I	GGWCC	1 cut(s)	175
EcoT14I	CCWWGG	2 cut(s)	255, 583
ErhI	CCWWGG	2 cut(s)	255, 583
FaeI	CATG	6 cut(s)	79, 187, 236, 460, 530, 587
FaiI	YATR	7 cut(s)	77, 185, 212, 234, 458, 528, 585
FaqI	GGGAC	1 cut(s)	613
FatI	CATG	6 cut(s)	75, 183, 232, 456, 526, 583
FauI	CCCGC	1 cut(s)	237
FbaI	TGATCA	3 cut(s)	201, 477, 652
FblI	GTMKAC	1 cut(s)	470
Fnu4HI	GCNGC	9 cut(s)	117, 332, 504, 516, 531, 534, 537, 540, 555
Fsp4HI	GCNGC	9 cut(s)	117, 332, 504, 516, 531, 534, 537, 540, 555
FspBI	CTAG	1 cut(s)	498
FspI	TGCGCA	1 cut(s)	215
GlaI	GCGC	3 cut(s)	215, 326, 335
GluI	GCNGC	9 cut(s)	117, 332, 504, 516, 531, 534, 537, 540, 555
GsaI	CCCAGC	1 cut(s)	383
HaeIII	GGCC	2 cut(s)	311, 464
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	1 cut(s)	260
HhaI	GCGC	3 cut(s)	216, 327, 336
Hin1I	GRCGYC	1 cut(s)	252
Hin1II	CATG	6 cut(s)	79, 187, 236, 460, 530, 587
Hin6I	GCGC	3 cut(s)	214, 325, 334
HinP1I	GCGC	3 cut(s)	214, 325, 334
HincII	GTYRAC	1 cut(s)	471
HindII	GTYRAC	1 cut(s)	471
HinfI	GANTC	1 cut(s)	467
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	4 cut(s)	455, 572, 647, 662
Hpy166II	GTNNAC	1 cut(s)	471
Hpy188I	TCNGA	5 cut(s)	67, 206, 247, 283, 596
Hpy188III	TCNNGA	1 cut(s)	481
Hpy8I	GTNNAC	1 cut(s)	471
HpyCH4III	ACNGT	2 cut(s)	163, 179
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	4 cut(s)	159, 530, 539, 661
HpyF10VI	GCNNNNNNNGC	7 cut(s)	322, 331, 333, 512, 536, 539, 563
HpyF3I	CTNAG	2 cut(s)	87, 244
HpySE526I	ACGT	1 cut(s)	357
Hsp92I	GRCGYC	1 cut(s)	252
Hsp92II	CATG	6 cut(s)	79, 187, 236, 460, 530, 587
HspAI	GCGC	3 cut(s)	214, 325, 334
Ksp22I	TGATCA	3 cut(s)	201, 477, 652
Kzo9I	GATC	7 cut(s)	69, 201, 219, 240, 445, 477, 652
LmnI	GCTCC	3 cut(s)	53, 458, 571
Lsp1109I	GCAGC	8 cut(s)	103, 343, 515, 523, 542, 545, 551, 566
LweI	GCATC	1 cut(s)	674
MaeI	CTAG	1 cut(s)	498
MaeII	ACGT	1 cut(s)	357
MalI	GATC	7 cut(s)	71, 203, 221, 242, 447, 479, 654
MboI	GATC	7 cut(s)	69, 201, 219, 240, 445, 477, 652
MboII	GAAGA	3 cut(s)	260, 365, 616
MflI	RGATCY	2 cut(s)	219, 240
MluCI	AATT	2 cut(s)	207, 342
MlyI	GAGTC	1 cut(s)	476
MnlI	CCTC	6 cut(s)	5, 301, 414, 428, 433, 453
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	582
MspA1I	CMGCKG	2 cut(s)	536, 557
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	161
MvnI	CGCG	1 cut(s)	327
MwoI	GCNNNNNNNGC	7 cut(s)	322, 331, 333, 512, 536, 539, 563
NciI	CCSGG	1 cut(s)	52
NcoI	CCATGG	1 cut(s)	583
NdeII	GATC	7 cut(s)	69, 201, 219, 240, 445, 477, 652
NlaIII	CATG	6 cut(s)	79, 187, 236, 460, 530, 587
NlaIV	GGNNCC	1 cut(s)	454
NmeAIII	GCCGAG	1 cut(s)	490
NsbI	TGCGCA	1 cut(s)	215
NspI	RCATGY	1 cut(s)	236
PaeI	GCATGC	1 cut(s)	236
PaqCI	CACCTGC	1 cut(s)	666
PcsI	WCGNNNNNNNCGW	1 cut(s)	159
PctI	GAATGC	1 cut(s)	161
PkrI	GCNGC	9 cut(s)	118, 333, 505, 517, 532, 535, 538, 541, 556
PleI	GAGTC	1 cut(s)	475
PpsI	GAGTC	1 cut(s)	475
PspFI	CCCAGC	1 cut(s)	379
PspN4I	GGNNCC	1 cut(s)	454
PspPI	GGNCC	2 cut(s)	175, 462
PstI	CTGCAG	2 cut(s)	541, 663
PstNI	CAGNNNCTG	2 cut(s)	536, 640
PsuI	RGATCY	2 cut(s)	219, 240
PvuII	CAGCTG	2 cut(s)	536, 557
RsaI	GTAC	3 cut(s)	287, 496, 619
RsaNI	GTAC	3 cut(s)	286, 495, 618
RseI	CAYNNNNRTG	1 cut(s)	582
SalI	GTCGAC	1 cut(s)	469
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	9 cut(s)	117, 332, 504, 516, 531, 534, 537, 540, 555
Sau3AI	GATC	7 cut(s)	69, 201, 219, 240, 445, 477, 652
Sau96I	GGNCC	2 cut(s)	175, 462
SbfI	CCTGCAGG	1 cut(s)	663
SchI	GAGTC	1 cut(s)	476
ScrFI	CCNGG	1 cut(s)	52
SdaI	CCTGCAGG	1 cut(s)	663
SfaNI	GCATC	1 cut(s)	674
SfcI	CTRYAG	2 cut(s)	537, 659
SinI	GGWCC	1 cut(s)	175
SmiMI	CAYNNNNRTG	1 cut(s)	582
SphI	GCATGC	1 cut(s)	236
Sse8387I	CCTGCAGG	1 cut(s)	663
Sse9I	AATT	2 cut(s)	207, 342
SsiI	CCGC	3 cut(s)	230, 424, 515
SspMI	CTAG	1 cut(s)	498
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	2 cut(s)	255, 583
TaaI	ACNGT	2 cut(s)	163, 179
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	3 cut(s)	387, 399, 470
TasI	AATT	2 cut(s)	207, 342
TatI	WGTACW	1 cut(s)	285
TauI	GCSGC	1 cut(s)	518
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	645
TseI	GCWGC	8 cut(s)	116, 331, 503, 530, 533, 536, 539, 554
TspDTI	ATGAA	4 cut(s)	92, 172, 286, 563
TspGWI	ACGGA	1 cut(s)	419
TspRI	CASTG	1 cut(s)	645
VpaK11BI	GGWCC	1 cut(s)	175
XceI	RCATGY	1 cut(s)	236
XmiI	GTMKAC	1 cut(s)	470
XspI	CTAG	1 cut(s)	498

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.