Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0008922

Physical Location & Seq

Genomic Coordinates Forward (+)

32058383 .. 32060477

Gene Structure 2095 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g32810.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 867 bp

ATGAAACGATCAGGAGGTTTCCATGGCTACCAAAGGACCGCGACCACCCCAAACACAACCTCTGCTTCTGGGCTGAAACCATCAGATATCAACCTGAGGCAGGCTGAGATGAACCAATACAGCATGGGGATGGGGAGACAGACTACGGCCACCTCCAACGTTAACAATGTTTTCAACAACAACAACGTTAACCACCCCTCCAATGCCAATACCACTAATGGCACTGCCGATGATAACGAGTGCATGGTGCGAGAGCAAGACCGTTTTATGCCGATAGCCAATGTGATAAGAATCATGCGCAAGATCCTTCCCCCACATGCCAAGATCTCTGACGACGCCAAGGAAACCATCCAAGAGTGCGTCTCCGAGTACATCAGCTTCATCACTGGGGAGGCCAACGAGCGCTGCCAGCGTGAGCAGCGGAAGACCATCACTGCTGAAGACGTGCTGTGGGCCATGAGCAAGCTCGGCTTTGATGACTACATCGAGCCACTCACCCTCTACCTGCACCGCTACCGCGAGATGGAGGGCGAGCGTGGGTCCTCCACCACCTCTTTGATGAGAAGCGAGTCCTTGGCCAAGGGGGCGGGTACTAGTAGTGGTACCAGCAGCAGGTCAATGGATCACCACCAGTACTATGGCACCTCTATGGCGGCTGCTGCGGCTGCTTTTCATCATCAGCATGGCCATGGCCTTTTTGGTTACATGCAGCCGTCCGATGTGTCCGTCTCCAACAATAATGCGAATGCTGCAGCAGCATCTGGATCGTCCTCCCAGCTCCAGGGTGGTGGTTCTGCCGCAATGCCAAATGGTGATCACCATCAGCCACATGCAAATGGTGCAAATGGTCCAAGTGGTGGAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0033613 GO:0033993 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

289

Amino Acids

31.09

Weight (kDa)

6.49

Isoelectric Point (pI)

37.26

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47670 AT5G47670 AT5G47670
fragaria_vesca	FvH4_3g00320 FvH4_3g00320 FvH4_3g11540
malus_domestica	MD05G1361600.v1.1 MD10G1339000.v1.1
prunus_persica	Prupe.4G003800_v2.0.a1 Prupe.4G003800_v2.0.a1
pyrus_communis	pycom05g32810 pycom10g28870
rosa_chinensis	RchiOBHm_Chr5g0000501
rosa_laevigata	RLG00000030872
rosa_multiflora	Rmu_sc0003949.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075680
rosa_rugosa	Rorug04G0384300
rosa_samantha	Rh5AG004100 Rh5BG005500 Rh5CG004500 Rh5DG004400
rosa_wichuraiana	Rw5G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	299
Acc36I	ACCTGC	2 cut(s)	513, 603
Acc65I	GGTACC	1 cut(s)	602
AccB1I	GGYRCC	2 cut(s)	602, 641
AccB7I	CCANNNNNTGG	1 cut(s)	857
AccII	CGCG	2 cut(s)	41, 519
AciI	CCGC	8 cut(s)	39, 421, 511, 517, 587, 653, 662, 798
AclI	AACGTT	2 cut(s)	159, 186
AclWI	GGATC	3 cut(s)	298, 630, 772
AcoI	YGGCCR	3 cut(s)	147, 576, 685
AcuI	CTGAAG	1 cut(s)	459
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	4 cut(s)	371, 592, 604, 635
AfeI	AGCGCT	1 cut(s)	404
AfiI	CCNNNNNNNGG	5 cut(s)	100, 523, 612, 781, 857
AgsI	TTSAA	1 cut(s)	175
AhlI	ACTAGT	1 cut(s)	593
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	780
AluBI	AGCT	3 cut(s)	378, 466, 778
AluI	AGCT	3 cut(s)	378, 466, 778
Alw26I	GTCTC	3 cut(s)	130, 367, 733
AlwI	GGATC	3 cut(s)	298, 630, 772
AlwNI	CAGNNNCTG	1 cut(s)	761
Aor51HI	AGCGCT	1 cut(s)	404
AoxI	GGCC	6 cut(s)	147, 393, 453, 576, 685, 691
Asp718I	GGTACC	1 cut(s)	602
AspLEI	GCGC	2 cut(s)	300, 405
AspS9I	GGNCC	4 cut(s)	36, 453, 540, 848
AsuHPI	GGTGA	4 cut(s)	487, 617, 809, 824
AvaII	GGWCC	3 cut(s)	36, 540, 848
AxyI	CCTNAGG	1 cut(s)	95
BalI	TGGCCA	2 cut(s)	578, 687
BanI	GGYRCC	2 cut(s)	602, 641
BarI	GAAGNNNNNNTAC	2 cut(s)	362, 394
BbsI	GAAGAC	2 cut(s)	431, 447
BccI	CCATC	6 cut(s)	88, 124, 356, 437, 517, 828
BceAI	ACGGC	2 cut(s)	162, 697
BcgI	CGANNNNNNTGC	2 cut(s)	747, 781
BciT130I	CCWGG	1 cut(s)	782
BclI	TGATCA	1 cut(s)	814
BcoDI	GTCTC	3 cut(s)	130, 367, 733
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	1 cut(s)	594
BfmI	CTRYAG	1 cut(s)	750
BfoI	RGCGCY	1 cut(s)	406
BfuAI	ACCTGC	2 cut(s)	513, 603
BglI	GCCNNNNNGGC	1 cut(s)	584
BglII	AGATCT	1 cut(s)	324
BmcAI	AGTACT	1 cut(s)	635
Bme1390I	CCNGG	1 cut(s)	782
Bme18I	GGWCC	3 cut(s)	36, 540, 848
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	4 cut(s)	36, 453, 540, 848
BmiI	GGNNCC	3 cut(s)	541, 604, 643
BmrFI	CCNGG	1 cut(s)	782
BmrI	ACTGGG	1 cut(s)	396
BmsI	GCATC	1 cut(s)	767
BmuI	ACTGGG	1 cut(s)	396
BpiI	GAAGAC	2 cut(s)	431, 447
BplI	GAGNNNNNCTC	2 cut(s)	347, 379
BpmI	CTGGAG	1 cut(s)	764
BsaBI	GATNNNNATC	2 cut(s)	290, 819
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	6 cut(s)	22, 339, 573, 579, 688, 781
BsaXI	ACNNNNNCTCC	2 cut(s)	182, 212
Bsc4I	CCNNNNNNNGG	5 cut(s)	100, 523, 612, 781, 857
Bse1I	ACTGG	2 cut(s)	391, 631
Bse21I	CCTNAGG	1 cut(s)	95
Bse3DI	GCAATG	1 cut(s)	807
Bse8I	GATNNNNATC	2 cut(s)	290, 819
BseBI	CCWGG	1 cut(s)	782
BseDI	CCNNGG	6 cut(s)	22, 339, 573, 579, 688, 781
BseGI	GGATG	2 cut(s)	135, 348
BseJI	GATNNNNATC	2 cut(s)	290, 819
BseLI	CCNNNNNNNGG	5 cut(s)	100, 523, 612, 781, 857
BseMI	GCAATG	1 cut(s)	807
BseMII	CTCAG	2 cut(s)	86, 96
BseNI	ACTGG	2 cut(s)	391, 631
BseYI	CCCAGC	1 cut(s)	774
BsgI	GTGCAG	1 cut(s)	491
Bsh1236I	CGCG	2 cut(s)	41, 519
BshFI	GGCC	6 cut(s)	149, 395, 455, 578, 687, 693
BshNI	GGYRCC	2 cut(s)	602, 641
BslI	CCNNNNNNNGG	5 cut(s)	100, 523, 612, 781, 857
BsmAI	GTCTC	3 cut(s)	130, 367, 733
BsmBI	CGTCTC	2 cut(s)	367, 733
BsmI	GAATGC	1 cut(s)	751
BsnI	GGCC	6 cut(s)	149, 395, 455, 578, 687, 693
Bsp143I	GATC	6 cut(s)	8, 303, 324, 622, 764, 814
Bsp19I	CCATGG	2 cut(s)	22, 688
BspACI	CCGC	8 cut(s)	39, 421, 511, 517, 587, 653, 662, 798
BspANI	GGCC	6 cut(s)	149, 395, 455, 578, 687, 693
BspCNI	CTCAG	2 cut(s)	87, 97
BspFNI	CGCG	2 cut(s)	41, 519
BspLI	GGNNCC	3 cut(s)	541, 604, 643
BspMAI	CTGCAG	1 cut(s)	754
BspMI	ACCTGC	2 cut(s)	513, 603
BspPI	GGATC	3 cut(s)	298, 630, 772
BspT107I	GGYRCC	2 cut(s)	602, 641
BsrDI	GCAATG	1 cut(s)	807
BsrI	ACTGG	2 cut(s)	391, 631
BssECI	CCNNGG	6 cut(s)	22, 339, 573, 579, 688, 781
BssMI	GATC	6 cut(s)	8, 303, 324, 622, 764, 814
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	5 cut(s)	22, 339, 573, 579, 688
Bst2UI	CCWGG	1 cut(s)	782
Bst4CI	ACNGT	1 cut(s)	263
BstACI	GRCGYC	1 cut(s)	336
BstAPI	GCANNNNNTGC	1 cut(s)	839
BstC8I	GCNNGC	4 cut(s)	102, 410, 464, 533
BstDEI	CTNAG	2 cut(s)	95, 105
BstDSI	CCRYGG	2 cut(s)	22, 688
BstENI	CCTNNNNNAGG	1 cut(s)	98
BstF5I	GGATG	2 cut(s)	135, 348
BstFNI	CGCG	2 cut(s)	41, 519
BstH2I	RGCGCY	1 cut(s)	406
BstHHI	GCGC	2 cut(s)	300, 405
BstKTI	GATC	6 cut(s)	11, 306, 327, 625, 767, 817
BstMAI	GTCTC	3 cut(s)	130, 367, 733
BstMBI	GATC	6 cut(s)	8, 303, 324, 622, 764, 814
BstNI	CCWGG	1 cut(s)	782
BstNSI	RCATGY	3 cut(s)	320, 709, 833
BstSCI	CCNGG	1 cut(s)	780
BstSFI	CTRYAG	1 cut(s)	750
BstUI	CGCG	2 cut(s)	41, 519
BstV2I	GAAGAC	2 cut(s)	431, 447
BstX2I	RGATCY	2 cut(s)	303, 324
BstXI	CCANNNNNNTGG	2 cut(s)	638, 788
BstYI	RGATCY	2 cut(s)	303, 324
Bsu36I	CCTNAGG	1 cut(s)	95
BsuRI	GGCC	6 cut(s)	149, 395, 455, 578, 687, 693
BtgI	CCRYGG	2 cut(s)	22, 688
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	2 cut(s)	135, 348
BtsI	GCAGTG	2 cut(s)	222, 432
BtsIMutI	CAGTG	3 cut(s)	222, 384, 432
BveI	ACCTGC	2 cut(s)	513, 603
Cac8I	GCNNGC	4 cut(s)	102, 410, 464, 533
CaiI	CAGNNNCTG	1 cut(s)	761
CfoI	GCGC	2 cut(s)	300, 405
Cfr13I	GGNCC	4 cut(s)	36, 453, 540, 848
CseI	GACGC	2 cut(s)	344, 349
Csp6I	GTAC	4 cut(s)	370, 591, 603, 634
CviQI	GTAC	4 cut(s)	370, 591, 603, 634
DdeI	CTNAG	2 cut(s)	95, 105
DpnI	GATC	6 cut(s)	10, 305, 326, 624, 766, 816
DpnII	GATC	6 cut(s)	8, 303, 324, 622, 764, 814
EaeI	YGGCCR	3 cut(s)	147, 576, 685
Eco130I	CCWWGG	5 cut(s)	22, 339, 573, 579, 688
Eco32I	GATATC	1 cut(s)	88
Eco47I	GGWCC	3 cut(s)	36, 540, 848
Eco47III	AGCGCT	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	459
Eco81I	CCTNAGG	1 cut(s)	95
EcoNI	CCTNNNNNAGG	1 cut(s)	98
EcoO109I	RGGNCCY	1 cut(s)	540
EcoRII	CCWGG	1 cut(s)	780
EcoRV	GATATC	1 cut(s)	88
EcoT14I	CCWWGG	5 cut(s)	22, 339, 573, 579, 688
ErhI	CCWWGG	5 cut(s)	22, 339, 573, 579, 688
Esp3I	CGTCTC	2 cut(s)	367, 733
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FauI	CCCGC	1 cut(s)	580
FbaI	TGATCA	1 cut(s)	814
FokI	GGATG	2 cut(s)	142, 335
FspBI	CTAG	1 cut(s)	594
FspI	TGCGCA	1 cut(s)	299
GlaI	GCGC	2 cut(s)	299, 404
GsaI	CCCAGC	1 cut(s)	778
GsuI	CTGGAG	1 cut(s)	764
HaeII	RGCGCY	1 cut(s)	406
HaeIII	GGCC	6 cut(s)	149, 395, 455, 578, 687, 693
HgaI	GACGC	2 cut(s)	344, 349
HhaI	GCGC	2 cut(s)	300, 405
Hin1I	GRCGYC	1 cut(s)	336
Hin6I	GCGC	2 cut(s)	298, 403
HinP1I	GCGC	2 cut(s)	298, 403
HincII	GTYRAC	2 cut(s)	163, 190
HindII	GTYRAC	2 cut(s)	163, 190
HinfI	GANTC	2 cut(s)	291, 569
HpaI	GTTAAC	2 cut(s)	163, 190
HphI	GGTGA	4 cut(s)	487, 617, 809, 824
Hpy166II	GTNNAC	2 cut(s)	163, 190
Hpy188I	TCNGA	4 cut(s)	85, 331, 367, 718
Hpy188III	TCNNGA	2 cut(s)	12, 762
Hpy8I	GTNNAC	2 cut(s)	163, 190
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	1 cut(s)	263
HpyCH4IV	ACGT	3 cut(s)	159, 186, 444
HpyCH4V	TGCA	6 cut(s)	243, 508, 709, 752, 833, 842
HpyF3I	CTNAG	2 cut(s)	95, 105
HpySE526I	ACGT	3 cut(s)	159, 186, 444
Hsp92I	GRCGYC	1 cut(s)	336
HspAI	GCGC	2 cut(s)	298, 403
KpnI	GGTACC	1 cut(s)	606
Ksp22I	TGATCA	1 cut(s)	814
KspAI	GTTAAC	2 cut(s)	163, 190
Kzo9I	GATC	6 cut(s)	8, 303, 324, 622, 764, 814
LmnI	GCTCC	1 cut(s)	783
LweI	GCATC	1 cut(s)	767
MaeI	CTAG	1 cut(s)	594
MaeII	ACGT	3 cut(s)	159, 186, 444
MaeIII	GTNAC	1 cut(s)	701
MalI	GATC	6 cut(s)	10, 305, 326, 624, 766, 816
MboI	GATC	6 cut(s)	8, 303, 324, 622, 764, 814
MboII	GAAGA	2 cut(s)	436, 452
MflI	RGATCY	2 cut(s)	303, 324
MlsI	TGGCCA	2 cut(s)	578, 687
MluNI	TGGCCA	2 cut(s)	578, 687
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	2 cut(s)	180, 756
Mox20I	TGGCCA	2 cut(s)	578, 687
MscI	TGGCCA	2 cut(s)	578, 687
MseI	TTAA	2 cut(s)	162, 189
MslI	CAYNNNNRTG	5 cut(s)	128, 647, 681, 687, 834
Msp20I	TGGCCA	2 cut(s)	578, 687
MspA1I	CMGCKG	1 cut(s)	421
MspR9I	CCNGG	1 cut(s)	782
Mva1269I	GAATGC	1 cut(s)	751
MvaI	CCWGG	1 cut(s)	782
MvnI	CGCG	2 cut(s)	41, 519
NcoI	CCATGG	2 cut(s)	22, 688
NdeII	GATC	6 cut(s)	8, 303, 324, 622, 764, 814
NlaIV	GGNNCC	3 cut(s)	541, 604, 643
NmeAIII	GCCGAG	1 cut(s)	447
NsbI	TGCGCA	1 cut(s)	299
NspI	RCATGY	3 cut(s)	320, 709, 833
PctI	GAATGC	1 cut(s)	751
PfeI	GAWTC	1 cut(s)	291
PflMI	CCANNNNNTGG	1 cut(s)	857
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
PpuMI	RGGWCCY	1 cut(s)	540
Psp1406I	AACGTT	2 cut(s)	159, 186
Psp5II	RGGWCCY	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	780
PspFI	CCCAGC	1 cut(s)	774
PspGI	CCWGG	1 cut(s)	780
PspN4I	GGNNCC	3 cut(s)	541, 604, 643
PspPI	GGNCC	4 cut(s)	36, 453, 540, 848
PspPPI	RGGWCCY	1 cut(s)	540
PstI	CTGCAG	1 cut(s)	754
PstNI	CAGNNNCTG	1 cut(s)	761
PsuI	RGATCY	2 cut(s)	303, 324
RsaI	GTAC	4 cut(s)	371, 592, 604, 635
RsaNI	GTAC	4 cut(s)	370, 591, 603, 634
RseI	CAYNNNNRTG	5 cut(s)	128, 647, 681, 687, 834
SaqAI	TTAA	2 cut(s)	162, 189
Sau3AI	GATC	6 cut(s)	8, 303, 324, 622, 764, 814
Sau96I	GGNCC	4 cut(s)	36, 453, 540, 848
ScaI	AGTACT	1 cut(s)	635
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	1 cut(s)	782
SfaNI	GCATC	1 cut(s)	767
SfcI	CTRYAG	1 cut(s)	750
SinI	GGWCC	3 cut(s)	36, 540, 848
SmiMI	CAYNNNNRTG	5 cut(s)	128, 647, 681, 687, 834
SpeI	ACTAGT	1 cut(s)	593
SsiI	CCGC	8 cut(s)	39, 421, 511, 517, 587, 653, 662, 798
SspMI	CTAG	1 cut(s)	594
StyD4I	CCNGG	1 cut(s)	780
StyI	CCWWGG	5 cut(s)	22, 339, 573, 579, 688
TaaI	ACNGT	1 cut(s)	263
TaiI	ACGT	3 cut(s)	162, 189, 447
TaqI	TCGA	1 cut(s)	486
TatI	WGTACW	2 cut(s)	369, 633
TauI	GCSGC	3 cut(s)	656, 665, 800
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	2 cut(s)	162, 189
Tru9I	TTAA	2 cut(s)	162, 189
TscAI	CASTG	3 cut(s)	229, 391, 439
TspDTI	ATGAA	4 cut(s)	17, 125, 370, 662
TspGWI	ACGGA	1 cut(s)	715
TspRI	CASTG	3 cut(s)	229, 391, 439
Van91I	CCANNNNNTGG	1 cut(s)	857
VpaK11BI	GGWCC	3 cut(s)	36, 540, 848
XagI	CCTNNNNNAGG	1 cut(s)	98
XceI	RCATGY	3 cut(s)	320, 709, 833
XcmI	CCANNNNNNNNNTGG	3 cut(s)	635, 695, 782
XspI	CTAG	1 cut(s)	594
ZrmI	AGTACT	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.