Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb3

Orthogroup ID

OG0008922

Physical Location & Seq

Genomic Coordinates Reverse (-)

190282 .. 192366

Gene Structure 2085 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_3g00320.t2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 705 bp

ATGGAACGGGGAGGTTTCCACGGCTACCAAAAGACCCAGAACGCCAGCTCCGGGTTGAAACTATCGGAGATCGACATGAAGCTGGCTGAGATTAACCACACCAACAATGGTGTTGCTGCTAGCGCTGCTGCTACTGATGACAACGAATGCACCGTGCGAGAGCAAGACCGTTTCATGCCGATAGCCAATGTGATCAGAATCATGCGCAAGATCCTGCCCCCGCATGCCAAGATCTCAGACGACGCCAAGGAAACAATCCAAGAGTGTGTCTCCGAGTACATCAGCTTCATCACCGGAGAGGCCAACGAGCGTTGCCAGCGCGAGCAGCGCAAGACCATTACTGCTGAAGACGTTCTGTGGGCAATGAGCAAGCTCGGCTTCGACGACTACATCGAGCCCCTCACTCTCTACCTCCACCGCTTCCGCGAGATGGAGGGTGATCGTGGCTCCATGAGGGCCGAGACTTTGATGAAGGCTGGTACTAGGGCAATGTCTGCGGCAGAGTATCATGCAGCTGCATCAGGCTCTTTCGCTGGCTTTGCTCCATTTCATCACCATGGCTTTTTCGGATACTTGAAGGATGCGTCCACATCCAATGGTGCTGGTACATCTTTGTCCCATCAGGCTAATGCTGTTGCTGCACTGGTAAATATTGGTGATCACCTGCAGGCATCACATTCCCAGTACGATGATAACAGTAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0033613 GO:0033993 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

235

Amino Acids

25.78

Weight (kDa)

5.86

Isoelectric Point (pI)

31.37

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	39 - 117	7.5e-07	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	53 - 117	4.6e-26	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47670 AT5G47670 AT5G47670
fragaria_vesca	FvH4_3g00320 FvH4_3g00320 FvH4_3g11540
malus_domestica	MD05G1361600.v1.1 MD10G1339000.v1.1
prunus_persica	Prupe.4G003800_v2.0.a1 Prupe.4G003800_v2.0.a1
pyrus_communis	pycom05g32810 pycom10g28870
rosa_chinensis	RchiOBHm_Chr5g0000501
rosa_laevigata	RLG00000030872
rosa_multiflora	Rmu_sc0003949.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075680
rosa_rugosa	Rorug04G0384300
rosa_samantha	Rh5AG004100 Rh5BG005500 Rh5CG004500 Rh5DG004400
rosa_wichuraiana	Rw5G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	672
Acc16I	TGCGCA	1 cut(s)	206
Acc36I	ACCTGC	1 cut(s)	672
AccII	CGCG	2 cut(s)	321, 426
AciI	CCGC	4 cut(s)	221, 418, 424, 497
AclWI	GGATC	1 cut(s)	205
AcuI	CTGAAG	1 cut(s)	366
AcyI	GRCGYC	1 cut(s)	243
AfaI	GTAC	4 cut(s)	278, 481, 607, 686
AfeI	AGCGCT	1 cut(s)	124
AfiI	CCNNNNNNNGG	2 cut(s)	51, 430
AgsI	TTSAA	2 cut(s)	58, 577
AloI	GAACNNNNNNTCC	2 cut(s)	32, 64
AluBI	AGCT	5 cut(s)	48, 82, 285, 373, 515
AluI	AGCT	5 cut(s)	48, 82, 285, 373, 515
Alw26I	GTCTC	2 cut(s)	274, 455
AlwI	GGATC	1 cut(s)	205
Aor51HI	AGCGCT	1 cut(s)	124
AoxI	GGCC	2 cut(s)	300, 456
ApeKI	GCWGC	7 cut(s)	116, 125, 128, 325, 512, 515, 638
Asp700I	GAANNNNTTC	1 cut(s)	351
AspLEI	GCGC	4 cut(s)	125, 207, 321, 330
AspS9I	GGNCC	1 cut(s)	456
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	5 cut(s)	283, 449, 545, 653, 668
AsuNHI	GCTAGC	1 cut(s)	119
BanII	GRGCYC	1 cut(s)	399
BarI	GAAGNNNNNNTAC	2 cut(s)	269, 301
BbsI	GAAGAC	1 cut(s)	354
BbvI	GCAGC	7 cut(s)	103, 112, 115, 337, 502, 524, 625
BccI	CCATC	2 cut(s)	424, 627
BceAI	ACGGC	1 cut(s)	37
BciVI	GTATCC	1 cut(s)	563
BclI	TGATCA	2 cut(s)	192, 658
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	2 cut(s)	274, 455
BfaI	CTAG	2 cut(s)	120, 483
BfmI	CTRYAG	1 cut(s)	665
BfoI	RGCGCY	1 cut(s)	126
BfuAI	ACCTGC	1 cut(s)	672
BfuI	GTATCC	1 cut(s)	563
BglII	AGATCT	1 cut(s)	231
BisI	GCNGC	8 cut(s)	117, 126, 129, 326, 498, 513, 516, 639
BlsI	GCNGC	8 cut(s)	118, 127, 130, 327, 499, 514, 517, 640
Bme1390I	CCNGG	1 cut(s)	52
BmgT120I	GGNCC	1 cut(s)	456
BmiI	GGNNCC	1 cut(s)	448
BmrFI	CCNGG	1 cut(s)	52
BmrI	ACTGGG	1 cut(s)	676
BmsI	GCATC	3 cut(s)	527, 571, 680
BmtI	GCTAGC	1 cut(s)	123
BmuI	ACTGGG	1 cut(s)	676
BpiI	GAAGAC	1 cut(s)	354
BplI	GAGNNNNNCTC	2 cut(s)	254, 286
BpuMI	CCSGG	1 cut(s)	52
BsaBI	GATNNNNATC	1 cut(s)	197
BsaHI	GRCGYC	1 cut(s)	243
BsaJI	CCNNGG	3 cut(s)	19, 246, 556
BsaWI	WCCGGW	1 cut(s)	293
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	2 cut(s)	51, 430
Bse1I	ACTGG	2 cut(s)	648, 682
Bse3DI	GCAATG	2 cut(s)	369, 495
Bse8I	GATNNNNATC	1 cut(s)	197
BseDI	CCNNGG	3 cut(s)	19, 246, 556
BseGI	GGATG	2 cut(s)	586, 590
BseJI	GATNNNNATC	1 cut(s)	197
BseLI	CCNNNNNNNGG	2 cut(s)	51, 430
BseMI	GCAATG	2 cut(s)	369, 495
BseMII	CTCAG	2 cut(s)	78, 249
BseNI	ACTGG	2 cut(s)	648, 682
BseXI	GCAGC	7 cut(s)	103, 112, 115, 337, 502, 524, 625
BsgI	GTGCAG	1 cut(s)	624
Bsh1236I	CGCG	2 cut(s)	321, 426
BshFI	GGCC	2 cut(s)	302, 458
BsiSI	CCGG	2 cut(s)	51, 294
BslFI	GGGAC	1 cut(s)	601
BslI	CCNNNNNNNGG	2 cut(s)	51, 430
BsmAI	GTCTC	2 cut(s)	274, 455
BsmFI	GGGAC	1 cut(s)	601
BsmI	GAATGC	1 cut(s)	152
BsnI	GGCC	2 cut(s)	302, 458
Bsp1286I	GDGCHC	1 cut(s)	399
Bsp143I	GATC	6 cut(s)	69, 192, 210, 231, 439, 658
Bsp19I	CCATGG	1 cut(s)	556
BspACI	CCGC	4 cut(s)	221, 418, 424, 497
BspANI	GGCC	2 cut(s)	302, 458
BspCNI	CTCAG	2 cut(s)	79, 248
BspFNI	CGCG	2 cut(s)	321, 426
BspLI	GGNNCC	1 cut(s)	448
BspMAI	CTGCAG	1 cut(s)	669
BspMI	ACCTGC	1 cut(s)	672
BspOI	GCTAGC	1 cut(s)	123
BspPI	GGATC	1 cut(s)	205
BsrDI	GCAATG	2 cut(s)	369, 495
BsrI	ACTGG	2 cut(s)	648, 682
BssECI	CCNNGG	3 cut(s)	19, 246, 556
BssMI	GATC	6 cut(s)	69, 192, 210, 231, 439, 658
BssNI	GRCGYC	1 cut(s)	243
BssT1I	CCWWGG	2 cut(s)	246, 556
Bst4CI	ACNGT	3 cut(s)	154, 170, 698
BstACI	GRCGYC	1 cut(s)	243
BstAPI	GCANNNNNTGC	1 cut(s)	494
BstC8I	GCNNGC	9 cut(s)	46, 84, 121, 225, 317, 323, 371, 535, 669
BstDEI	CTNAG	2 cut(s)	87, 235
BstDSI	CCRYGG	2 cut(s)	19, 556
BstF5I	GGATG	2 cut(s)	586, 590
BstFNI	CGCG	2 cut(s)	321, 426
BstH2I	RGCGCY	1 cut(s)	126
BstHHI	GCGC	4 cut(s)	125, 207, 321, 330
BstKTI	GATC	6 cut(s)	72, 195, 213, 234, 442, 661
BstMAI	GTCTC	2 cut(s)	274, 455
BstMBI	GATC	6 cut(s)	69, 192, 210, 231, 439, 658
BstMWI	GCNNNNNNNGC	9 cut(s)	122, 125, 316, 325, 327, 375, 494, 539, 638
BstNSI	RCATGY	1 cut(s)	227
BstSCI	CCNGG	1 cut(s)	50
BstSFI	CTRYAG	1 cut(s)	665
BstUI	CGCG	2 cut(s)	321, 426
BstV1I	GCAGC	7 cut(s)	103, 112, 115, 337, 502, 524, 625
BstV2I	GAAGAC	1 cut(s)	354
BstX2I	RGATCY	2 cut(s)	210, 231
BstYI	RGATCY	2 cut(s)	210, 231
BsuI	GTATCC	1 cut(s)	563
BsuRI	GGCC	2 cut(s)	302, 458
BtgI	CCRYGG	2 cut(s)	19, 556
BtsCI	GGATG	2 cut(s)	586, 590
BtsIMutI	CAGTG	1 cut(s)	641
BveI	ACCTGC	1 cut(s)	672
Cac8I	GCNNGC	9 cut(s)	46, 84, 121, 225, 317, 323, 371, 535, 669
CfoI	GCGC	4 cut(s)	125, 207, 321, 330
Cfr13I	GGNCC	1 cut(s)	456
CseI	GACGC	2 cut(s)	251, 573
Csp6I	GTAC	4 cut(s)	277, 480, 606, 685
CviAII	CATG	7 cut(s)	76, 175, 202, 224, 451, 509, 557
CviQI	GTAC	4 cut(s)	277, 480, 606, 685
DdeI	CTNAG	2 cut(s)	87, 235
DpnI	GATC	6 cut(s)	71, 194, 212, 233, 441, 660
DpnII	GATC	6 cut(s)	69, 192, 210, 231, 439, 658
Eco130I	CCWWGG	2 cut(s)	246, 556
Eco24I	GRGCYC	1 cut(s)	399
Eco47III	AGCGCT	1 cut(s)	124
Eco57I	CTGAAG	1 cut(s)	366
EcoT14I	CCWWGG	2 cut(s)	246, 556
EcoT38I	GRGCYC	1 cut(s)	399
ErhI	CCWWGG	2 cut(s)	246, 556
FaeI	CATG	7 cut(s)	79, 178, 205, 227, 454, 512, 560
FaiI	YATR	7 cut(s)	77, 176, 203, 225, 452, 510, 558
FalI	AAGNNNNNCTT	2 cut(s)	362, 394
FaqI	GGGAC	1 cut(s)	601
FatI	CATG	7 cut(s)	75, 174, 201, 223, 450, 508, 556
FauI	CCCGC	1 cut(s)	228
FbaI	TGATCA	2 cut(s)	192, 658
Fnu4HI	GCNGC	8 cut(s)	117, 126, 129, 326, 498, 513, 516, 639
FokI	GGATG	2 cut(s)	577, 593
FriOI	GRGCYC	1 cut(s)	399
Fsp4HI	GCNGC	8 cut(s)	117, 126, 129, 326, 498, 513, 516, 639
FspBI	CTAG	2 cut(s)	120, 483
FspI	TGCGCA	1 cut(s)	206
GlaI	GCGC	4 cut(s)	124, 206, 320, 329
GluI	GCNGC	8 cut(s)	117, 126, 129, 326, 498, 513, 516, 639
HaeII	RGCGCY	1 cut(s)	126
HaeIII	GGCC	2 cut(s)	302, 458
HapII	CCGG	2 cut(s)	51, 294
HgaI	GACGC	2 cut(s)	251, 573
HhaI	GCGC	4 cut(s)	125, 207, 321, 330
Hin1I	GRCGYC	1 cut(s)	243
Hin1II	CATG	7 cut(s)	79, 178, 205, 227, 454, 512, 560
Hin6I	GCGC	4 cut(s)	123, 205, 319, 328
HinP1I	GCGC	4 cut(s)	123, 205, 319, 328
HinfI	GANTC	1 cut(s)	198
HpaII	CCGG	2 cut(s)	51, 294
HphI	GGTGA	5 cut(s)	283, 449, 545, 653, 668
Hpy166II	GTNNAC	1 cut(s)	588
Hpy188I	TCNGA	5 cut(s)	67, 197, 238, 274, 569
Hpy8I	GTNNAC	1 cut(s)	588
Hpy99I	CGWCG	2 cut(s)	245, 386
HpyAV	CCTTC	2 cut(s)	466, 571
HpyCH4III	ACNGT	3 cut(s)	154, 170, 698
HpyCH4IV	ACGT	1 cut(s)	351
HpyCH4V	TGCA	5 cut(s)	150, 512, 518, 641, 667
HpyF10VI	GCNNNNNNNGC	9 cut(s)	122, 125, 316, 325, 327, 375, 494, 539, 638
HpyF3I	CTNAG	2 cut(s)	87, 235
HpySE526I	ACGT	1 cut(s)	351
Hsp92I	GRCGYC	1 cut(s)	243
Hsp92II	CATG	7 cut(s)	79, 178, 205, 227, 454, 512, 560
HspAI	GCGC	4 cut(s)	123, 205, 319, 328
Ksp22I	TGATCA	2 cut(s)	192, 658
Kzo9I	GATC	6 cut(s)	69, 192, 210, 231, 439, 658
LmnI	GCTCC	3 cut(s)	53, 452, 547
Lsp1109I	GCAGC	7 cut(s)	103, 112, 115, 337, 502, 524, 625
LweI	GCATC	3 cut(s)	527, 571, 680
MaeI	CTAG	2 cut(s)	120, 483
MaeII	ACGT	1 cut(s)	351
MalI	GATC	6 cut(s)	71, 194, 212, 233, 441, 660
MboI	GATC	6 cut(s)	69, 192, 210, 231, 439, 658
MboII	GAAGA	1 cut(s)	359
MflI	RGATCY	2 cut(s)	210, 231
MhlI	GDGCHC	1 cut(s)	399
MnlI	CCTC	6 cut(s)	5, 292, 410, 422, 427, 447
MroXI	GAANNNNTTC	1 cut(s)	351
MseI	TTAA	1 cut(s)	93
MslI	CAYNNNNRTG	1 cut(s)	555
MspA1I	CMGCKG	1 cut(s)	515
MspI	CCGG	2 cut(s)	51, 294
MspR9I	CCNGG	1 cut(s)	52
Mva1269I	GAATGC	1 cut(s)	152
MvnI	CGCG	2 cut(s)	321, 426
MwoI	GCNNNNNNNGC	9 cut(s)	122, 125, 316, 325, 327, 375, 494, 539, 638
NciI	CCSGG	1 cut(s)	52
NcoI	CCATGG	1 cut(s)	556
NdeII	GATC	6 cut(s)	69, 192, 210, 231, 439, 658
NheI	GCTAGC	1 cut(s)	119
NlaIII	CATG	7 cut(s)	79, 178, 205, 227, 454, 512, 560
NlaIV	GGNNCC	1 cut(s)	448
NmeAIII	GCCGAG	2 cut(s)	354, 484
NsbI	TGCGCA	1 cut(s)	206
NspI	RCATGY	1 cut(s)	227
PaeI	GCATGC	1 cut(s)	227
PaqCI	CACCTGC	1 cut(s)	672
PcsI	WCGNNNNNNNCGW	3 cut(s)	150, 381, 390
PctI	GAATGC	1 cut(s)	152
PdmI	GAANNNNTTC	1 cut(s)	351
PfeI	GAWTC	1 cut(s)	198
PkrI	GCNGC	8 cut(s)	118, 127, 130, 327, 499, 514, 517, 640
PspN4I	GGNNCC	1 cut(s)	448
PspPI	GGNCC	1 cut(s)	456
PstI	CTGCAG	1 cut(s)	669
PsuI	RGATCY	2 cut(s)	210, 231
PvuII	CAGCTG	1 cut(s)	515
RsaI	GTAC	4 cut(s)	278, 481, 607, 686
RsaNI	GTAC	4 cut(s)	277, 480, 606, 685
RseI	CAYNNNNRTG	1 cut(s)	555
SaqAI	TTAA	1 cut(s)	93
SatI	GCNGC	8 cut(s)	117, 126, 129, 326, 498, 513, 516, 639
Sau3AI	GATC	6 cut(s)	69, 192, 210, 231, 439, 658
Sau96I	GGNCC	1 cut(s)	456
SbfI	CCTGCAGG	1 cut(s)	669
ScrFI	CCNGG	1 cut(s)	52
SdaI	CCTGCAGG	1 cut(s)	669
SduI	GDGCHC	1 cut(s)	399
SetI	ASST	9 cut(s)	16, 50, 84, 287, 354, 375, 414, 517, 666
SfaNI	GCATC	3 cut(s)	527, 571, 680
SfcI	CTRYAG	1 cut(s)	665
SmiMI	CAYNNNNRTG	1 cut(s)	555
SphI	GCATGC	1 cut(s)	227
Sse8387I	CCTGCAGG	1 cut(s)	669
SsiI	CCGC	4 cut(s)	221, 418, 424, 497
SspI	AATATT	1 cut(s)	652
SspMI	CTAG	2 cut(s)	120, 483
StyD4I	CCNGG	1 cut(s)	50
StyI	CCWWGG	2 cut(s)	246, 556
TaaI	ACNGT	3 cut(s)	154, 170, 698
TaiI	ACGT	1 cut(s)	354
TaqI	TCGA	3 cut(s)	72, 381, 393
TatI	WGTACW	1 cut(s)	276
TauI	GCSGC	1 cut(s)	500
TfiI	GAWTC	1 cut(s)	198
Tru1I	TTAA	1 cut(s)	93
Tru9I	TTAA	1 cut(s)	93
TscAI	CASTG	1 cut(s)	648
TseI	GCWGC	7 cut(s)	116, 125, 128, 325, 512, 515, 638
TspDTI	ATGAA	5 cut(s)	92, 163, 277, 485, 539
TspRI	CASTG	1 cut(s)	648
XceI	RCATGY	1 cut(s)	227
XcmI	CCANNNNNNNNNTGG	1 cut(s)	104
XmnI	GAANNNNTTC	1 cut(s)	351
XspI	CTAG	2 cut(s)	120, 483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.