Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000004

Orthogroup ID

OG0008922

Physical Location & Seq

Genomic Coordinates Reverse (-)

55458925 .. 55461194

Gene Structure 2270 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug04G0384300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1023 bp

ATGCCATTCTGGTTCTTATATATTATGCTCTTCTTAGCTTCTTCTCTCGTTGCAGAGACAAGAATGATGAACCTCCTCCTACAATTACACTCGCAAACTGCTCGAAGGTGTATCACATCTTCTTCTTCTTCTTCTTCTTCTTTCAGAAGCCTCTCTTTCTTATCAACCCACCCAATACAACAACCTCTTAAACCCTCTCAACACTTAAACCCTCCTCATTCTTCTTTGATTGGTTTCTCTCCAAAACCCAGACCCACAATATTTTCTCCCGCTACTCTTCGATTCCTAACAACCCAGTCCTCTGAGGACCTCGACGATTACCAAGATGACACCTTTCAAGGTGAAGAAACAGAAGAGGGAGGAACATCAGATGGATGGGAAGAAGGAGATAGTACAGATGGTTGGGAGGACGAGGATGTCGCCGAGCCTAAGGTTGGTGATGGAGGCGATGGTGGTGGAGTGGTGTTCCATGGTGTTCCCTGGGGTGAGCGGGCACTGTCCATTGCTCGTGAGGTGTTGACATGGTTCTGTGATGACATGAAGCTCTTCTCTTTCAAGACTACTCCTCGAGGATATGTGTTTGTGAGACTGGACAAACTATCAAACGAATATGGATGTCCAAGTATGGAAGACCTTGGGCGCTACGGTAAAGAATACAAGAAAAGGTTGGATGAAGTTGGAGCACTTGGAGAAATACCCGAAGATTTGGCTGTTGAGGTATCATCTCCTGGCGCGGAGAGATTACTAAAGGTACCAGGTGATTTACCTCGGTTTAAAGACAAGACCATGAGAGTATGCTATTTAGAAGACGTGGATTCTAAACACCCAGAAAAGGATGGAGTATTTATGCTGGAGTCTGTTGAGACAGAGTCAGAGAGCTGTGTGTGGAAGTTGGCAAATGTGAAGGAAAACAGGGATCCGGACAGCAAAGGTAGACCATTAACACGTAAACAGACAGATTGGAGATTAAAATTGCCATTTTCTGCACATAAAAGGGTACTTCTGTACCTAAACTCAAGTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0033613 GO:0033993 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

340

Amino Acids

38.31

Weight (kDa)

5.07

Isoelectric Point (pI)

47.36

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF7912	PF25498	248 - 336	5.7e-37	Domain of unknown function (DUF7912)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47670 AT5G47670 AT5G47670
fragaria_vesca	FvH4_3g00320 FvH4_3g00320 FvH4_3g11540
malus_domestica	MD05G1361600.v1.1 MD10G1339000.v1.1
prunus_persica	Prupe.4G003800_v2.0.a1 Prupe.4G003800_v2.0.a1
pyrus_communis	pycom05g32810 pycom10g28870
rosa_chinensis	RchiOBHm_Chr5g0000501
rosa_laevigata	RLG00000030872
rosa_multiflora	Rmu_sc0003949.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075680
rosa_rugosa	Rorug04G0384300
rosa_samantha	Rh5AG004100 Rh5BG005500 Rh5CG004500 Rh5DG004400
rosa_wichuraiana	Rw5G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	416
AbsI	CCTCGAGG	1 cut(s)	567
Acc65I	GGTACC	1 cut(s)	751
AccB1I	GGYRCC	1 cut(s)	751
AccBSI	CCGCTC	1 cut(s)	490
AccI	GTMKAC	1 cut(s)	934
AccII	CGCG	1 cut(s)	734
AccIII	TCCGGA	1 cut(s)	919
AciI	CCGC	3 cut(s)	270, 490, 734
AclWI	GGATC	2 cut(s)	911, 924
AfaI	GTAC	4 cut(s)	394, 753, 999, 1007
AfiI	CCNNNNNNNGG	2 cut(s)	434, 832
AflIII	ACRYGT	1 cut(s)	944
AgsI	TTSAA	2 cut(s)	338, 556
AjiI	CACGTC	1 cut(s)	811
AjnI	CCWGG	3 cut(s)	479, 727, 754
AluBI	AGCT	3 cut(s)	38, 544, 879
AluI	AGCT	3 cut(s)	38, 544, 879
Alw21I	GWGCWC	1 cut(s)	685
Alw26I	GTCTC	3 cut(s)	50, 580, 857
AlwI	GGATC	2 cut(s)	911, 924
Ama87I	CYCGRG	1 cut(s)	567
Aor13HI	TCCGGA	1 cut(s)	919
Asp700I	GAANNNNTTC	1 cut(s)	545
Asp718I	GGTACC	1 cut(s)	751
AspLEI	GCGC	2 cut(s)	642, 734
AspS9I	GGNCC	1 cut(s)	307
AsuHPI	GGTGA	4 cut(s)	353, 449, 497, 770
AvaI	CYCGRG	1 cut(s)	567
AvaII	GGWCC	1 cut(s)	307
AxyI	CCTNAGG	1 cut(s)	429
BaeGI	GKGCMC	1 cut(s)	496
BaeI	ACNNNNGTAYC	4 cut(s)	989, 989, 1022, 1022
BamHI	GGATCC	1 cut(s)	916
BanI	GGYRCC	1 cut(s)	751
BarI	GAAGNNNNNNTAC	2 cut(s)	103, 135
BauI	CACGAG	1 cut(s)	507
BbsI	GAAGAC	2 cut(s)	636, 813
Bbv12I	GWGCWC	1 cut(s)	685
BccI	CCATC	6 cut(s)	365, 369, 392, 434, 443, 830
BcgI	CGANNNNNNTGC	2 cut(s)	83, 117
BciT130I	CCWGG	3 cut(s)	481, 729, 756
BcoDI	GTCTC	3 cut(s)	50, 580, 857
BfoI	RGCGCY	1 cut(s)	643
Bme1390I	CCNGG	3 cut(s)	481, 729, 756
Bme18I	GGWCC	1 cut(s)	307
BmeT110I	CYCGRG	1 cut(s)	567
BmgBI	CACGTC	1 cut(s)	811
BmgT120I	GGNCC	1 cut(s)	307
BmiI	GGNNCC	2 cut(s)	753, 918
BmrFI	CCNGG	3 cut(s)	481, 729, 756
BmrI	ACTGGG	1 cut(s)	289
BmuI	ACTGGG	1 cut(s)	289
BpiI	GAAGAC	2 cut(s)	636, 813
BpmI	CTGGAG	1 cut(s)	872
BpuEI	CTTGAG	1 cut(s)	1000
BsaAI	YACGTR	1 cut(s)	947
BsaJI	CCNNGG	5 cut(s)	469, 479, 480, 634, 767
BsaWI	WCCGGW	1 cut(s)	919
Bsc4I	CCNNNNNNNGG	2 cut(s)	434, 832
Bse1I	ACTGG	2 cut(s)	295, 594
Bse21I	CCTNAGG	1 cut(s)	429
Bse3DI	GCAATG	1 cut(s)	501
BseAI	TCCGGA	1 cut(s)	919
BseBI	CCWGG	3 cut(s)	481, 729, 756
BseDI	CCNNGG	5 cut(s)	469, 479, 480, 634, 767
BseGI	GGATG	5 cut(s)	380, 421, 620, 676, 841
BseLI	CCNNNNNNNGG	2 cut(s)	434, 832
BseMI	GCAATG	1 cut(s)	501
BseMII	CTCAG	1 cut(s)	294
BseNI	ACTGG	2 cut(s)	295, 594
BseRI	GAGGAG	3 cut(s)	65, 204, 555
BseSI	GKGCMC	1 cut(s)	496
BsgI	GTGCAG	1 cut(s)	969
Bsh1236I	CGCG	1 cut(s)	734
BshNI	GGYRCC	1 cut(s)	751
BsiHKAI	GWGCWC	1 cut(s)	685
BsiHKCI	CYCGRG	1 cut(s)	567
BsiSI	CCGG	1 cut(s)	920
BslI	CCNNNNNNNGG	2 cut(s)	434, 832
BsmAI	GTCTC	3 cut(s)	50, 580, 857
BsoBI	CYCGRG	1 cut(s)	567
Bsp1286I	GDGCHC	2 cut(s)	496, 685
Bsp13I	TCCGGA	1 cut(s)	919
Bsp143I	GATC	1 cut(s)	916
Bsp19I	CCATGG	1 cut(s)	469
BspACI	CCGC	3 cut(s)	270, 490, 734
BspCNI	CTCAG	1 cut(s)	295
BspEI	TCCGGA	1 cut(s)	919
BspFNI	CGCG	1 cut(s)	734
BspLI	GGNNCC	2 cut(s)	753, 918
BspPI	GGATC	2 cut(s)	911, 924
BspQI	GCTCTTC	2 cut(s)	35, 551
BspT107I	GGYRCC	1 cut(s)	751
BsrBI	CCGCTC	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	501
BsrI	ACTGG	2 cut(s)	295, 594
BssECI	CCNNGG	5 cut(s)	469, 479, 480, 634, 767
BssMI	GATC	1 cut(s)	916
BssSI	CACGAG	1 cut(s)	507
BssT1I	CCWWGG	2 cut(s)	469, 634
Bst2BI	CACGAG	1 cut(s)	507
Bst2UI	CCWGG	3 cut(s)	481, 729, 756
Bst4CI	ACNGT	2 cut(s)	498, 647
Bst6I	CTCTTC	4 cut(s)	35, 282, 348, 551
BstBAI	YACGTR	1 cut(s)	947
BstC8I	GCNNGC	1 cut(s)	492
BstDEI	CTNAG	3 cut(s)	34, 303, 429
BstDSI	CCRYGG	1 cut(s)	469
BstF5I	GGATG	5 cut(s)	380, 421, 620, 676, 841
BstFNI	CGCG	1 cut(s)	734
BstH2I	RGCGCY	1 cut(s)	643
BstHHI	GCGC	2 cut(s)	642, 734
BstKTI	GATC	1 cut(s)	919
BstMAI	GTCTC	3 cut(s)	50, 580, 857
BstMBI	GATC	1 cut(s)	916
BstNI	CCWGG	3 cut(s)	481, 729, 756
BstSCI	CCNGG	3 cut(s)	479, 727, 754
BstSLI	GKGCMC	1 cut(s)	496
BstUI	CGCG	1 cut(s)	734
BstV2I	GAAGAC	2 cut(s)	636, 813
BstX2I	RGATCY	1 cut(s)	916
BstYI	RGATCY	1 cut(s)	916
Bsu36I	CCTNAGG	1 cut(s)	429
BtgI	CCRYGG	1 cut(s)	469
BtgZI	GCGATG	1 cut(s)	462
BtrI	CACGTC	1 cut(s)	811
BtsCI	GGATG	5 cut(s)	380, 421, 620, 676, 841
BtsIMutI	CAGTG	1 cut(s)	494
Cac8I	GCNNGC	1 cut(s)	492
CfoI	GCGC	2 cut(s)	642, 734
Cfr13I	GGNCC	1 cut(s)	307
CsiI	ACCWGGT	1 cut(s)	754
Csp6I	GTAC	4 cut(s)	393, 752, 998, 1006
CviAII	CATG	4 cut(s)	470, 522, 538, 787
CviJI	RGCY	6 cut(s)	38, 150, 427, 544, 710, 879
CviKI_1	RGCY	6 cut(s)	38, 150, 427, 544, 710, 879
CviQI	GTAC	4 cut(s)	393, 752, 998, 1006
DdeI	CTNAG	3 cut(s)	34, 303, 429
DpnI	GATC	1 cut(s)	918
DpnII	GATC	1 cut(s)	916
DraI	TTTAAA	1 cut(s)	775
DrdI	GACNNNNNNGTC	1 cut(s)	416
DseDI	GACNNNNNNGTC	1 cut(s)	416
Eam1104I	CTCTTC	4 cut(s)	35, 282, 348, 551
EarI	CTCTTC	4 cut(s)	35, 282, 348, 551
Eco130I	CCWWGG	2 cut(s)	469, 634
Eco47I	GGWCC	1 cut(s)	307
Eco81I	CCTNAGG	1 cut(s)	429
Eco88I	CYCGRG	1 cut(s)	567
EcoO109I	RGGNCCY	1 cut(s)	307
EcoRII	CCWGG	3 cut(s)	479, 727, 754
EcoT14I	CCWWGG	2 cut(s)	469, 634
ErhI	CCWWGG	2 cut(s)	469, 634
FaeI	CATG	4 cut(s)	473, 525, 541, 790
FalI	AAGNNNNNCTT	2 cut(s)	139, 171
FatI	CATG	4 cut(s)	469, 521, 537, 786
FauI	CCCGC	2 cut(s)	277, 483
FblI	GTMKAC	1 cut(s)	934
FokI	GGATG	5 cut(s)	387, 428, 627, 683, 848
GlaI	GCGC	2 cut(s)	641, 733
GsuI	CTGGAG	1 cut(s)	872
HaeII	RGCGCY	1 cut(s)	643
HapII	CCGG	1 cut(s)	920
HhaI	GCGC	2 cut(s)	642, 734
Hin1II	CATG	4 cut(s)	473, 525, 541, 790
Hin6I	GCGC	2 cut(s)	640, 732
HinP1I	GCGC	2 cut(s)	640, 732
HincII	GTYRAC	1 cut(s)	519
HindII	GTYRAC	1 cut(s)	519
HinfI	GANTC	4 cut(s)	282, 815, 854, 869
HpaII	CCGG	1 cut(s)	920
HphI	GGTGA	4 cut(s)	353, 449, 497, 770
Hpy166II	GTNNAC	3 cut(s)	519, 935, 950
Hpy188I	TCNGA	4 cut(s)	146, 304, 370, 874
Hpy188III	TCNNGA	3 cut(s)	509, 556, 920
Hpy8I	GTNNAC	3 cut(s)	519, 935, 950
Hpy99I	CGWCG	1 cut(s)	317
HpyAV	CCTTC	3 cut(s)	99, 377, 898
HpyCH4III	ACNGT	2 cut(s)	498, 647
HpyCH4IV	ACGT	2 cut(s)	810, 946
HpyCH4V	TGCA	2 cut(s)	53, 986
HpyF3I	CTNAG	3 cut(s)	34, 303, 429
HpySE526I	ACGT	2 cut(s)	810, 946
Hsp92II	CATG	4 cut(s)	473, 525, 541, 790
HspAI	GCGC	2 cut(s)	640, 732
Kpn2I	TCCGGA	1 cut(s)	919
KpnI	GGTACC	1 cut(s)	755
Kzo9I	GATC	1 cut(s)	916
LguI	GCTCTTC	2 cut(s)	35, 551
LmnI	GCTCC	1 cut(s)	680
MabI	ACCWGGT	1 cut(s)	754
MaeII	ACGT	2 cut(s)	810, 946
MalI	GATC	1 cut(s)	918
MbiI	CCGCTC	1 cut(s)	490
MboI	GATC	1 cut(s)	916
MflI	RGATCY	1 cut(s)	916
MhlI	GDGCHC	2 cut(s)	496, 685
MluCI	AATT	2 cut(s)	83, 971
MlyI	GAGTC	2 cut(s)	863, 878
MmeI	TCCRAC	2 cut(s)	648, 658
MroI	TCCGGA	1 cut(s)	919
MroXI	GAANNNNTTC	1 cut(s)	545
MseI	TTAA	5 cut(s)	189, 206, 774, 941, 968
MspI	CCGG	1 cut(s)	920
MspR9I	CCNGG	3 cut(s)	481, 729, 756
MvaI	CCWGG	3 cut(s)	481, 729, 756
MvnI	CGCG	1 cut(s)	734
NcoI	CCATGG	1 cut(s)	469
NdeII	GATC	1 cut(s)	916
NlaIII	CATG	4 cut(s)	473, 525, 541, 790
NlaIV	GGNNCC	2 cut(s)	753, 918
NmeAIII	GCCGAG	1 cut(s)	448
PaeR7I	CTCGAG	1 cut(s)	567
PasI	CCCWGGG	1 cut(s)	480
PciSI	GCTCTTC	2 cut(s)	35, 551
PdmI	GAANNNNTTC	1 cut(s)	545
PfeI	GAWTC	2 cut(s)	282, 815
PflFI	GACNNNGTC	1 cut(s)	868
PleI	GAGTC	2 cut(s)	862, 877
PpsI	GAGTC	2 cut(s)	862, 877
Ppu21I	YACGTR	1 cut(s)	947
PpuMI	RGGWCCY	1 cut(s)	307
Psp5II	RGGWCCY	1 cut(s)	307
Psp6I	CCWGG	3 cut(s)	479, 727, 754
PspGI	CCWGG	3 cut(s)	479, 727, 754
PspN4I	GGNNCC	2 cut(s)	753, 918
PspPI	GGNCC	1 cut(s)	307
PspPPI	RGGWCCY	1 cut(s)	307
PspXI	VCTCGAGB	1 cut(s)	567
PsuI	RGATCY	1 cut(s)	916
PsyI	GACNNNGTC	1 cut(s)	868
RsaI	GTAC	4 cut(s)	394, 753, 999, 1007
RsaNI	GTAC	4 cut(s)	393, 752, 998, 1006
SapI	GCTCTTC	2 cut(s)	35, 551
SaqAI	TTAA	5 cut(s)	189, 206, 774, 941, 968
Sau3AI	GATC	1 cut(s)	916
Sau96I	GGNCC	1 cut(s)	307
SchI	GAGTC	2 cut(s)	863, 878
ScrFI	CCNGG	3 cut(s)	481, 729, 756
SduI	GDGCHC	2 cut(s)	496, 685
SexAI	ACCWGGT	1 cut(s)	754
Sfr274I	CTCGAG	1 cut(s)	567
SinI	GGWCC	1 cut(s)	307
SlaI	CTCGAG	1 cut(s)	567
SmlI	CTYRAG	2 cut(s)	567, 1015
SmoI	CTYRAG	2 cut(s)	567, 1015
Sse9I	AATT	2 cut(s)	83, 971
SsiI	CCGC	3 cut(s)	270, 490, 734
SspI	AATATT	1 cut(s)	261
StyD4I	CCNGG	3 cut(s)	479, 727, 754
StyI	CCWWGG	2 cut(s)	469, 634
TaaI	ACNGT	2 cut(s)	498, 647
TaiI	ACGT	2 cut(s)	813, 949
TaqI	TCGA	4 cut(s)	103, 280, 312, 568
TasI	AATT	2 cut(s)	83, 971
TatI	WGTACW	1 cut(s)	392
TfiI	GAWTC	2 cut(s)	282, 815
Tru1I	TTAA	5 cut(s)	189, 206, 774, 941, 968
Tru9I	TTAA	5 cut(s)	189, 206, 774, 941, 968
TscAI	CASTG	1 cut(s)	501
TspDTI	ATGAA	3 cut(s)	83, 554, 687
TspRI	CASTG	1 cut(s)	501
Tth111I	GACNNNGTC	1 cut(s)	868
VpaK11BI	GGWCC	1 cut(s)	307
XhoI	CTCGAG	1 cut(s)	567
XmiI	GTMKAC	1 cut(s)	934
XmnI	GAANNNNTTC	1 cut(s)	545

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.