Basic Information

Type: gene

Biological Identity

Species

rosa_chinensis

Chromosome

Orthogroup ID

OG0008922

Physical Location & Seq

Genomic Coordinates Reverse (-)

297051 .. 297740

Gene Structure 690 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

PRQ28204

Sequence Viewer

CDS Protein Promoter (2k)

Length: 690 bp

ATGAGCTTGGTAAATCCATGTGCAGGGCTGAAACTATCAGAGATCAACATGAGGCTGGCTGAGATCAACCACACCAAGAATAGCGCTGCTATCACCAACAATGGTGCTGCTGCTGCTACTACTGATGAGAATGAATGCATTGTGCGAGAGCAAGACCGTTTCATGCCCATTGCCAATGTGATCAGAATCATGCGCAAGATCCTGCCCCCGCATGCCAAGATCTCAGACGACGCCAAGGAAACAATCCAAGAGTGTGTCTCAGAGTACATCAGCTTCATCACAGGGGAGGCCAATGAGCGTTGCCAGCGTGAGCAGCGCAAGACCATTACTGCCGAAGACGTGCTGTGGGCAATGAGCAAGCTGGGGTTCGATGACTACATTGAGCCCCTCACTCTCTACCTCCACCGCTTCCGCGAGATGGAGGGAGATCGTGGCTCCATGAGGGCCGAGACTTTGATGAAGACTAGTAGCAGGGCAATGACTGCGGCAGAGTATCATGCAGCTGCAGCAGGCTCTTTCGCTGGTTTTGCTCCTTTTCATCACCATGGCTTTTTCGGATACTTGAAGGATGCGTCCATATCCAATGGGGCAGCTGGTACATCTTTGTCCCAGCAGGCTAATGCTGTTGCTGCAATGGCAAATGGTGATCACCAGGCATCACATTCCCAGTATGATGATAACAATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0033613 GO:0033993 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

229

Amino Acids

25.21

Weight (kDa)

5.84

Isoelectric Point (pI)

30.58

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	41 - 118	1.1e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	54 - 118	4.6e-26	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47670 AT5G47670 AT5G47670
fragaria_vesca	FvH4_3g00320 FvH4_3g00320 FvH4_3g11540
malus_domestica	MD05G1361600.v1.1 MD10G1339000.v1.1
prunus_persica	Prupe.4G003800_v2.0.a1 Prupe.4G003800_v2.0.a1
pyrus_communis	pycom05g32810 pycom10g28870
rosa_chinensis	RchiOBHm_Chr5g0000501
rosa_laevigata	RLG00000030872
rosa_multiflora	Rmu_sc0003949.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075680
rosa_rugosa	Rorug04G0384300
rosa_samantha	Rh5AG004100 Rh5BG005500 Rh5CG004500 Rh5DG004400
rosa_wichuraiana	Rw5G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	194
AccII	CGCG	1 cut(s)	414
AciI	CCGC	4 cut(s)	209, 406, 412, 485
AclWI	GGATC	1 cut(s)	193
AcyI	GRCGYC	1 cut(s)	231
AfaI	GTAC	2 cut(s)	266, 598
AfeI	AGCGCT	1 cut(s)	85
AfiI	CCNNNNNNNGG	2 cut(s)	23, 418
AgsI	TTSAA	1 cut(s)	565
AhlI	ACTAGT	1 cut(s)	464
AjiI	CACGTC	1 cut(s)	340
AjnI	CCWGG	1 cut(s)	651
AluBI	AGCT	5 cut(s)	6, 273, 361, 503, 593
AluI	AGCT	5 cut(s)	6, 273, 361, 503, 593
Alw26I	GTCTC	2 cut(s)	262, 443
AlwI	GGATC	1 cut(s)	193
Aor51HI	AGCGCT	1 cut(s)	85
AoxI	GGCC	2 cut(s)	288, 444
AspLEI	GCGC	3 cut(s)	86, 195, 318
AspS9I	GGNCC	1 cut(s)	444
AsuHPI	GGTGA	4 cut(s)	85, 533, 641, 656
BanII	GRGCYC	1 cut(s)	387
BarI	GAAGNNNNNNTAC	2 cut(s)	257, 289
BbsI	GAAGAC	2 cut(s)	342, 467
BccI	CCATC	1 cut(s)	412
BciT130I	CCWGG	1 cut(s)	653
BciVI	GTATCC	1 cut(s)	551
BclI	TGATCA	2 cut(s)	180, 646
BcoDI	GTCTC	2 cut(s)	262, 443
BcuI	ACTAGT	1 cut(s)	464
BfaI	CTAG	1 cut(s)	465
BfmI	CTRYAG	1 cut(s)	504
BfoI	RGCGCY	1 cut(s)	87
BfuI	GTATCC	1 cut(s)	551
BglII	AGATCT	1 cut(s)	219
Bme1390I	CCNGG	1 cut(s)	653
BmgBI	CACGTC	1 cut(s)	340
BmgT120I	GGNCC	1 cut(s)	444
BmiI	GGNNCC	1 cut(s)	436
BmrFI	CCNGG	1 cut(s)	653
BmrI	ACTGGG	1 cut(s)	661
BmsI	GCATC	2 cut(s)	559, 665
BmuI	ACTGGG	1 cut(s)	661
BpiI	GAAGAC	2 cut(s)	342, 467
BplI	GAGNNNNNCTC	2 cut(s)	242, 274
BsaBI	GATNNNNATC	1 cut(s)	185
BsaHI	GRCGYC	1 cut(s)	231
BsaJI	CCNNGG	2 cut(s)	234, 544
Bsc4I	CCNNNNNNNGG	2 cut(s)	23, 418
Bse1I	ACTGG	1 cut(s)	667
Bse3DI	GCAATG	4 cut(s)	168, 357, 483, 639
Bse8I	GATNNNNATC	1 cut(s)	185
BseBI	CCWGG	1 cut(s)	653
BseDI	CCNNGG	2 cut(s)	234, 544
BseGI	GGATG	1 cut(s)	574
BseJI	GATNNNNATC	1 cut(s)	185
BseLI	CCNNNNNNNGG	2 cut(s)	23, 418
BseMI	GCAATG	4 cut(s)	168, 357, 483, 639
BseMII	CTCAG	3 cut(s)	51, 237, 273
BseNI	ACTGG	1 cut(s)	667
BseYI	CCCAGC	2 cut(s)	361, 609
BsgI	GTGCAG	1 cut(s)	42
Bsh1236I	CGCG	1 cut(s)	414
BshFI	GGCC	2 cut(s)	290, 446
BslFI	GGGAC	1 cut(s)	592
BslI	CCNNNNNNNGG	2 cut(s)	23, 418
BsmAI	GTCTC	2 cut(s)	262, 443
BsmFI	GGGAC	1 cut(s)	592
BsmI	GAATGC	1 cut(s)	140
BsnI	GGCC	2 cut(s)	290, 446
Bsp1286I	GDGCHC	1 cut(s)	387
Bsp143I	GATC	7 cut(s)	42, 63, 180, 198, 219, 427, 646
Bsp19I	CCATGG	1 cut(s)	544
BspACI	CCGC	4 cut(s)	209, 406, 412, 485
BspANI	GGCC	2 cut(s)	290, 446
BspCNI	CTCAG	3 cut(s)	52, 236, 272
BspFNI	CGCG	1 cut(s)	414
BspLI	GGNNCC	1 cut(s)	436
BspMAI	CTGCAG	1 cut(s)	508
BspPI	GGATC	1 cut(s)	193
BsrDI	GCAATG	4 cut(s)	168, 357, 483, 639
BsrI	ACTGG	1 cut(s)	667
BssECI	CCNNGG	2 cut(s)	234, 544
BssMI	GATC	7 cut(s)	42, 63, 180, 198, 219, 427, 646
BssNI	GRCGYC	1 cut(s)	231
BssT1I	CCWWGG	2 cut(s)	234, 544
Bst2UI	CCWGG	1 cut(s)	653
Bst4CI	ACNGT	1 cut(s)	158
BstACI	GRCGYC	1 cut(s)	231
BstAPI	GCANNNNNTGC	1 cut(s)	482
BstC8I	GCNNGC	6 cut(s)	57, 213, 305, 359, 511, 615
BstDEI	CTNAG	3 cut(s)	60, 223, 259
BstDSI	CCRYGG	1 cut(s)	544
BstF5I	GGATG	1 cut(s)	574
BstFNI	CGCG	1 cut(s)	414
BstH2I	RGCGCY	1 cut(s)	87
BstHHI	GCGC	3 cut(s)	86, 195, 318
BstKTI	GATC	7 cut(s)	45, 66, 183, 201, 222, 430, 649
BstMAI	GTCTC	2 cut(s)	262, 443
BstMBI	GATC	7 cut(s)	42, 63, 180, 198, 219, 427, 646
BstMWI	GCNNNNNNNGC	8 cut(s)	113, 304, 313, 482, 506, 527, 629, 635
BstNI	CCWGG	1 cut(s)	653
BstNSI	RCATGY	1 cut(s)	215
BstSCI	CCNGG	1 cut(s)	651
BstSFI	CTRYAG	1 cut(s)	504
BstUI	CGCG	1 cut(s)	414
BstV2I	GAAGAC	2 cut(s)	342, 467
BstX2I	RGATCY	2 cut(s)	198, 219
BstYI	RGATCY	2 cut(s)	198, 219
BsuI	GTATCC	1 cut(s)	551
BsuRI	GGCC	2 cut(s)	290, 446
BtgI	CCRYGG	1 cut(s)	544
BtrI	CACGTC	1 cut(s)	340
BtsCI	GGATG	1 cut(s)	574
Cac8I	GCNNGC	6 cut(s)	57, 213, 305, 359, 511, 615
CfoI	GCGC	3 cut(s)	86, 195, 318
Cfr13I	GGNCC	1 cut(s)	444
CseI	GACGC	2 cut(s)	239, 561
Csp6I	GTAC	2 cut(s)	265, 597
CviAII	CATG	8 cut(s)	18, 49, 163, 190, 212, 439, 497, 545
CviQI	GTAC	2 cut(s)	265, 597
DdeI	CTNAG	3 cut(s)	60, 223, 259
DpnI	GATC	7 cut(s)	44, 65, 182, 200, 221, 429, 648
DpnII	GATC	7 cut(s)	42, 63, 180, 198, 219, 427, 646
Eco130I	CCWWGG	2 cut(s)	234, 544
Eco24I	GRGCYC	1 cut(s)	387
Eco47III	AGCGCT	1 cut(s)	85
EcoRII	CCWGG	1 cut(s)	651
EcoT14I	CCWWGG	2 cut(s)	234, 544
EcoT22I	ATGCAT	1 cut(s)	140
EcoT38I	GRGCYC	1 cut(s)	387
ErhI	CCWWGG	2 cut(s)	234, 544
FaeI	CATG	8 cut(s)	21, 52, 166, 193, 215, 442, 500, 548
FaqI	GGGAC	1 cut(s)	592
FatI	CATG	8 cut(s)	17, 48, 162, 189, 211, 438, 496, 544
FauI	CCCGC	1 cut(s)	216
FbaI	TGATCA	2 cut(s)	180, 646
FokI	GGATG	1 cut(s)	581
FriOI	GRGCYC	1 cut(s)	387
FspBI	CTAG	1 cut(s)	465
FspI	TGCGCA	1 cut(s)	194
GlaI	GCGC	3 cut(s)	85, 194, 317
GsaI	CCCAGC	2 cut(s)	365, 613
HaeII	RGCGCY	1 cut(s)	87
HaeIII	GGCC	2 cut(s)	290, 446
HgaI	GACGC	2 cut(s)	239, 561
HhaI	GCGC	3 cut(s)	86, 195, 318
Hin1I	GRCGYC	1 cut(s)	231
Hin1II	CATG	8 cut(s)	21, 52, 166, 193, 215, 442, 500, 548
Hin6I	GCGC	3 cut(s)	84, 193, 316
HinP1I	GCGC	3 cut(s)	84, 193, 316
HinfI	GANTC	1 cut(s)	186
HphI	GGTGA	4 cut(s)	85, 533, 641, 656
Hpy188I	TCNGA	5 cut(s)	40, 185, 226, 262, 557
Hpy99I	CGWCG	1 cut(s)	233
HpyAV	CCTTC	1 cut(s)	559
HpyCH4III	ACNGT	1 cut(s)	158
HpyCH4IV	ACGT	1 cut(s)	339
HpyCH4V	TGCA	5 cut(s)	23, 138, 500, 506, 632
HpyF10VI	GCNNNNNNNGC	8 cut(s)	113, 304, 313, 482, 506, 527, 629, 635
HpyF3I	CTNAG	3 cut(s)	60, 223, 259
HpySE526I	ACGT	1 cut(s)	339
Hsp92I	GRCGYC	1 cut(s)	231
Hsp92II	CATG	8 cut(s)	21, 52, 166, 193, 215, 442, 500, 548
HspAI	GCGC	3 cut(s)	84, 193, 316
Ksp22I	TGATCA	2 cut(s)	180, 646
Kzo9I	GATC	7 cut(s)	42, 63, 180, 198, 219, 427, 646
LmnI	GCTCC	2 cut(s)	440, 535
LweI	GCATC	2 cut(s)	559, 665
MaeI	CTAG	1 cut(s)	465
MaeII	ACGT	1 cut(s)	339
MalI	GATC	7 cut(s)	44, 65, 182, 200, 221, 429, 648
MboI	GATC	7 cut(s)	42, 63, 180, 198, 219, 427, 646
MboII	GAAGA	2 cut(s)	347, 472
MflI	RGATCY	2 cut(s)	198, 219
MhlI	GDGCHC	1 cut(s)	387
MnlI	CCTC	6 cut(s)	45, 280, 398, 410, 415, 435
Mph1103I	ATGCAT	1 cut(s)	140
MslI	CAYNNNNRTG	1 cut(s)	543
MspA1I	CMGCKG	2 cut(s)	503, 593
MspR9I	CCNGG	1 cut(s)	653
Mva1269I	GAATGC	1 cut(s)	140
MvaI	CCWGG	1 cut(s)	653
MvnI	CGCG	1 cut(s)	414
MwoI	GCNNNNNNNGC	8 cut(s)	113, 304, 313, 482, 506, 527, 629, 635
NcoI	CCATGG	1 cut(s)	544
NdeII	GATC	7 cut(s)	42, 63, 180, 198, 219, 427, 646
NlaIII	CATG	8 cut(s)	21, 52, 166, 193, 215, 442, 500, 548
NlaIV	GGNNCC	1 cut(s)	436
NmeAIII	GCCGAG	1 cut(s)	472
NsbI	TGCGCA	1 cut(s)	194
NsiI	ATGCAT	1 cut(s)	140
NspI	RCATGY	1 cut(s)	215
PaeI	GCATGC	1 cut(s)	215
PctI	GAATGC	1 cut(s)	140
PfeI	GAWTC	1 cut(s)	186
Psp6I	CCWGG	1 cut(s)	651
PspFI	CCCAGC	2 cut(s)	361, 609
PspGI	CCWGG	1 cut(s)	651
PspN4I	GGNNCC	1 cut(s)	436
PspPI	GGNCC	1 cut(s)	444
PstI	CTGCAG	1 cut(s)	508
PsuI	RGATCY	2 cut(s)	198, 219
PvuII	CAGCTG	2 cut(s)	503, 593
RsaI	GTAC	2 cut(s)	266, 598
RsaNI	GTAC	2 cut(s)	265, 597
RseI	CAYNNNNRTG	1 cut(s)	543
Sau3AI	GATC	7 cut(s)	42, 63, 180, 198, 219, 427, 646
Sau96I	GGNCC	1 cut(s)	444
ScrFI	CCNGG	1 cut(s)	653
SduI	GDGCHC	1 cut(s)	387
SetI	ASST	7 cut(s)	8, 275, 342, 363, 402, 505, 595
SfaNI	GCATC	2 cut(s)	559, 665
SfcI	CTRYAG	1 cut(s)	504
SmiMI	CAYNNNNRTG	1 cut(s)	543
SpeI	ACTAGT	1 cut(s)	464
SphI	GCATGC	1 cut(s)	215
SsiI	CCGC	4 cut(s)	209, 406, 412, 485
SspMI	CTAG	1 cut(s)	465
StyD4I	CCNGG	1 cut(s)	651
StyI	CCWWGG	2 cut(s)	234, 544
TaaI	ACNGT	1 cut(s)	158
TaiI	ACGT	1 cut(s)	342
TaqI	TCGA	1 cut(s)	369
TatI	WGTACW	1 cut(s)	264
TauI	GCSGC	1 cut(s)	488
TfiI	GAWTC	1 cut(s)	186
TspDTI	ATGAA	5 cut(s)	147, 151, 265, 473, 527
XceI	RCATGY	1 cut(s)	215
XspI	CTAG	1 cut(s)	465
Zsp2I	ATGCAT	1 cut(s)	140

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.