Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0008922

Physical Location & Seq

Genomic Coordinates Forward (+)

47696633 .. 47698977

Gene Structure 2345 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1361600.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 876 bp

ATGAAACGATCAGGAGGTTTCCATGGCTACCAAAAGACCGCAACCACCCCAAACACAACCTCTGCTTCTGGGCTGAAACTATCAGATATCAACGTGAGGCTGGCTGAGATGAACCAATACAGCATGGGGATTGGGAGACAGACTACGGCCACCACCAACGTTAACAATGTTTTCAACAACAACAACGTTAACCCCTCATCCAATGCCAATACCACTAATGGCACTGCCGATGATAACGACTGCATGGTGCGAGAGCAAGACCGTTTTATGCCGATAGCCAATGTGATAAGAATCATGCGCAAGATCCTTCCCCCACATGCCAAGATCTCTGACGACGCCAAGGAAACCATCCAAGAGTGCGTCTCCGAGTACATCAGCTTCATCACCGGGGAGGCCAACGAGCGCTGCCAGCGTGAGCAGCGCAAGACCATCACTGCTGAAGACGTGCTGTGGGCCATGAGCAAGCTCGGCTTTGATGACTACATTGAGCCACTCACCCTCTACCTGCACCGCTACCGTGAGATGGAGGGCGAGCGTGGGTCCTCCACCACCTCTTTGATGAGAAGCGAGTCCTTGGCAAAGGGGGCGGGTACTAGTAGTGGTACCAGCAGCAGGGCAATGGATCACCACCAGTACTATGGCAACTCTATGGCGGCTGCTGCGGCTGCTTTTCATCATCAGCATGGCCATGGCCTTTTTGGTTACATGCAGCCGTCCAATGTGTCCGTCTCCAACAATAATGTGAATGCTGCTTCTGCTGCAGCAGCATGTGGATCGTCCACCCAGCTCCAGGGTGGTGGTTCTGCCGCAATGCCAAATGGTGATCACCATCAACCACATGCAAATGGTGCAAATGGTCCAAGTGGTGGAGTGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0033613 GO:0033993 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

292

Amino Acids

31.27

Weight (kDa)

6.63

Isoelectric Point (pI)

31.72

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	78 - 153	1.3e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	89 - 153	7.1e-26	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47670 AT5G47670 AT5G47670
fragaria_vesca	FvH4_3g00320 FvH4_3g00320 FvH4_3g11540
malus_domestica	MD05G1361600.v1.1 MD10G1339000.v1.1
prunus_persica	Prupe.4G003800_v2.0.a1 Prupe.4G003800_v2.0.a1
pyrus_communis	pycom05g32810 pycom10g28870
rosa_chinensis	RchiOBHm_Chr5g0000501
rosa_laevigata	RLG00000030872
rosa_multiflora	Rmu_sc0003949.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075680
rosa_rugosa	Rorug04G0384300
rosa_samantha	Rh5AG004100 Rh5BG005500 Rh5CG004500 Rh5DG004400
rosa_wichuraiana	Rw5G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	299
Acc36I	ACCTGC	1 cut(s)	513
Acc65I	GGTACC	1 cut(s)	602
AccB1I	GGYRCC	1 cut(s)	602
AccB7I	CCANNNNNTGG	1 cut(s)	866
AciI	CCGC	6 cut(s)	39, 511, 587, 653, 662, 807
AclI	AACGTT	2 cut(s)	159, 186
AclWI	GGATC	3 cut(s)	298, 630, 781
AcoI	YGGCCR	2 cut(s)	147, 685
AcuI	CTGAAG	1 cut(s)	459
AcyI	GRCGYC	1 cut(s)	336
AfaI	GTAC	4 cut(s)	371, 592, 604, 635
AfeI	AGCGCT	1 cut(s)	404
AfiI	CCNNNNNNNGG	4 cut(s)	523, 612, 790, 866
AgsI	TTSAA	1 cut(s)	175
AhlI	ACTAGT	1 cut(s)	593
AjiI	CACGTC	1 cut(s)	445
AjnI	CCWGG	1 cut(s)	789
AluBI	AGCT	3 cut(s)	378, 466, 787
AluI	AGCT	3 cut(s)	378, 466, 787
Alw26I	GTCTC	3 cut(s)	130, 367, 733
AlwI	GGATC	3 cut(s)	298, 630, 781
Aor51HI	AGCGCT	1 cut(s)	404
AoxI	GGCC	5 cut(s)	147, 393, 453, 685, 691
Asp718I	GGTACC	1 cut(s)	602
AspLEI	GCGC	3 cut(s)	300, 405, 423
AspS9I	GGNCC	3 cut(s)	453, 540, 857
AsuC2I	CCSGG	1 cut(s)	388
AsuHPI	GGTGA	5 cut(s)	376, 487, 617, 818, 833
AvaII	GGWCC	2 cut(s)	540, 857
BalI	TGGCCA	1 cut(s)	687
BanI	GGYRCC	1 cut(s)	602
BarI	GAAGNNNNNNTAC	2 cut(s)	362, 394
BbsI	GAAGAC	1 cut(s)	447
BccI	CCATC	4 cut(s)	356, 437, 517, 837
BceAI	ACGGC	2 cut(s)	162, 697
BcgI	CGANNNNNNTGC	2 cut(s)	756, 790
BciT130I	CCWGG	1 cut(s)	791
BclI	TGATCA	1 cut(s)	823
BcnI	CCSGG	1 cut(s)	388
BcoDI	GTCTC	3 cut(s)	130, 367, 733
BcuI	ACTAGT	1 cut(s)	593
BfaI	CTAG	1 cut(s)	594
BfmI	CTRYAG	1 cut(s)	759
BfoI	RGCGCY	1 cut(s)	406
BfuAI	ACCTGC	1 cut(s)	513
BglII	AGATCT	1 cut(s)	324
BmcAI	AGTACT	1 cut(s)	635
Bme1390I	CCNGG	2 cut(s)	388, 791
Bme18I	GGWCC	2 cut(s)	540, 857
BmgBI	CACGTC	1 cut(s)	445
BmgT120I	GGNCC	3 cut(s)	453, 540, 857
BmiI	GGNNCC	2 cut(s)	541, 604
BmrFI	CCNGG	2 cut(s)	388, 791
BpiI	GAAGAC	1 cut(s)	447
BplI	GAGNNNNNCTC	2 cut(s)	347, 379
BpmI	CTGGAG	1 cut(s)	773
BpuMI	CCSGG	1 cut(s)	388
BsaBI	GATNNNNATC	2 cut(s)	290, 828
BsaHI	GRCGYC	1 cut(s)	336
BsaJI	CCNNGG	6 cut(s)	22, 339, 387, 573, 688, 790
Bsc4I	CCNNNNNNNGG	4 cut(s)	523, 612, 790, 866
Bse1I	ACTGG	1 cut(s)	631
Bse3DI	GCAATG	2 cut(s)	624, 816
Bse8I	GATNNNNATC	2 cut(s)	290, 828
BseBI	CCWGG	1 cut(s)	791
BseDI	CCNNGG	6 cut(s)	22, 339, 387, 573, 688, 790
BseGI	GGATG	2 cut(s)	197, 348
BseJI	GATNNNNATC	2 cut(s)	290, 828
BseLI	CCNNNNNNNGG	4 cut(s)	523, 612, 790, 866
BseMI	GCAATG	2 cut(s)	624, 816
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	631
BseYI	CCCAGC	1 cut(s)	783
BsgI	GTGCAG	1 cut(s)	491
BshFI	GGCC	5 cut(s)	149, 395, 455, 687, 693
BshNI	GGYRCC	1 cut(s)	602
BsiSI	CCGG	1 cut(s)	387
BslI	CCNNNNNNNGG	4 cut(s)	523, 612, 790, 866
BsmAI	GTCTC	3 cut(s)	130, 367, 733
BsmBI	CGTCTC	2 cut(s)	367, 733
BsmI	GAATGC	1 cut(s)	751
BsnI	GGCC	5 cut(s)	149, 395, 455, 687, 693
Bsp143I	GATC	6 cut(s)	8, 303, 324, 622, 773, 823
Bsp19I	CCATGG	2 cut(s)	22, 688
BspACI	CCGC	6 cut(s)	39, 511, 587, 653, 662, 807
BspANI	GGCC	5 cut(s)	149, 395, 455, 687, 693
BspCNI	CTCAG	1 cut(s)	97
BspLI	GGNNCC	2 cut(s)	541, 604
BspMAI	CTGCAG	1 cut(s)	763
BspMI	ACCTGC	1 cut(s)	513
BspPI	GGATC	3 cut(s)	298, 630, 781
BspT107I	GGYRCC	1 cut(s)	602
BsrDI	GCAATG	2 cut(s)	624, 816
BsrI	ACTGG	1 cut(s)	631
BssECI	CCNNGG	6 cut(s)	22, 339, 387, 573, 688, 790
BssMI	GATC	6 cut(s)	8, 303, 324, 622, 773, 823
BssNI	GRCGYC	1 cut(s)	336
BssT1I	CCWWGG	4 cut(s)	22, 339, 573, 688
Bst2UI	CCWGG	1 cut(s)	791
Bst4CI	ACNGT	2 cut(s)	263, 518
BstACI	GRCGYC	1 cut(s)	336
BstAPI	GCANNNNNTGC	1 cut(s)	848
BstC8I	GCNNGC	4 cut(s)	102, 410, 464, 533
BstDEI	CTNAG	1 cut(s)	105
BstDSI	CCRYGG	2 cut(s)	22, 688
BstF5I	GGATG	2 cut(s)	197, 348
BstH2I	RGCGCY	1 cut(s)	406
BstHHI	GCGC	3 cut(s)	300, 405, 423
BstKTI	GATC	6 cut(s)	11, 306, 327, 625, 776, 826
BstMAI	GTCTC	3 cut(s)	130, 367, 733
BstMBI	GATC	6 cut(s)	8, 303, 324, 622, 773, 823
BstNI	CCWGG	1 cut(s)	791
BstNSI	RCATGY	4 cut(s)	320, 709, 771, 842
BstSCI	CCNGG	2 cut(s)	386, 789
BstSFI	CTRYAG	1 cut(s)	759
BstV2I	GAAGAC	1 cut(s)	447
BstX2I	RGATCY	2 cut(s)	303, 324
BstXI	CCANNNNNNTGG	2 cut(s)	638, 797
BstYI	RGATCY	2 cut(s)	303, 324
BsuRI	GGCC	5 cut(s)	149, 395, 455, 687, 693
BtgI	CCRYGG	2 cut(s)	22, 688
BtrI	CACGTC	1 cut(s)	445
BtsCI	GGATG	2 cut(s)	197, 348
BtsI	GCAGTG	2 cut(s)	222, 432
BtsIMutI	CAGTG	2 cut(s)	222, 432
BveI	ACCTGC	1 cut(s)	513
Cac8I	GCNNGC	4 cut(s)	102, 410, 464, 533
CfoI	GCGC	3 cut(s)	300, 405, 423
Cfr13I	GGNCC	3 cut(s)	453, 540, 857
CseI	GACGC	2 cut(s)	344, 349
Csp6I	GTAC	4 cut(s)	370, 591, 603, 634
CviQI	GTAC	4 cut(s)	370, 591, 603, 634
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	6 cut(s)	10, 305, 326, 624, 775, 825
DpnII	GATC	6 cut(s)	8, 303, 324, 622, 773, 823
EaeI	YGGCCR	2 cut(s)	147, 685
Eco130I	CCWWGG	4 cut(s)	22, 339, 573, 688
Eco32I	GATATC	1 cut(s)	88
Eco47I	GGWCC	2 cut(s)	540, 857
Eco47III	AGCGCT	1 cut(s)	404
Eco57I	CTGAAG	1 cut(s)	459
EcoO109I	RGGNCCY	1 cut(s)	540
EcoRII	CCWGG	1 cut(s)	789
EcoRV	GATATC	1 cut(s)	88
EcoT14I	CCWWGG	4 cut(s)	22, 339, 573, 688
ErhI	CCWWGG	4 cut(s)	22, 339, 573, 688
Esp3I	CGTCTC	2 cut(s)	367, 733
FalI	AAGNNNNNCTT	2 cut(s)	455, 487
FauI	CCCGC	1 cut(s)	580
FbaI	TGATCA	1 cut(s)	823
FokI	GGATG	2 cut(s)	184, 335
FspBI	CTAG	1 cut(s)	594
FspI	TGCGCA	1 cut(s)	299
GlaI	GCGC	3 cut(s)	299, 404, 422
GsaI	CCCAGC	1 cut(s)	787
GsuI	CTGGAG	1 cut(s)	773
HaeII	RGCGCY	1 cut(s)	406
HaeIII	GGCC	5 cut(s)	149, 395, 455, 687, 693
HapII	CCGG	1 cut(s)	387
HgaI	GACGC	2 cut(s)	344, 349
HhaI	GCGC	3 cut(s)	300, 405, 423
Hin1I	GRCGYC	1 cut(s)	336
Hin6I	GCGC	3 cut(s)	298, 403, 421
HinP1I	GCGC	3 cut(s)	298, 403, 421
HincII	GTYRAC	2 cut(s)	163, 190
HindII	GTYRAC	2 cut(s)	163, 190
HinfI	GANTC	2 cut(s)	291, 569
HpaI	GTTAAC	2 cut(s)	163, 190
HpaII	CCGG	1 cut(s)	387
HphI	GGTGA	5 cut(s)	376, 487, 617, 818, 833
Hpy166II	GTNNAC	3 cut(s)	163, 190, 780
Hpy188I	TCNGA	3 cut(s)	85, 331, 367
Hpy188III	TCNNGA	1 cut(s)	12
Hpy8I	GTNNAC	3 cut(s)	163, 190, 780
Hpy99I	CGWCG	1 cut(s)	338
HpyAV	CCTTC	1 cut(s)	317
HpyCH4III	ACNGT	2 cut(s)	263, 518
HpyCH4IV	ACGT	4 cut(s)	93, 159, 186, 444
HpyCH4V	TGCA	6 cut(s)	243, 508, 709, 761, 842, 851
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	4 cut(s)	93, 159, 186, 444
Hsp92I	GRCGYC	1 cut(s)	336
HspAI	GCGC	3 cut(s)	298, 403, 421
KpnI	GGTACC	1 cut(s)	606
Ksp22I	TGATCA	1 cut(s)	823
KspAI	GTTAAC	2 cut(s)	163, 190
Kzo9I	GATC	6 cut(s)	8, 303, 324, 622, 773, 823
LmnI	GCTCC	1 cut(s)	792
MaeI	CTAG	1 cut(s)	594
MaeII	ACGT	4 cut(s)	93, 159, 186, 444
MaeIII	GTNAC	1 cut(s)	701
MalI	GATC	6 cut(s)	10, 305, 326, 624, 775, 825
MboI	GATC	6 cut(s)	8, 303, 324, 622, 773, 823
MboII	GAAGA	1 cut(s)	452
MflI	RGATCY	2 cut(s)	303, 324
MlsI	TGGCCA	1 cut(s)	687
MluNI	TGGCCA	1 cut(s)	687
MlyI	GAGTC	1 cut(s)	578
MmeI	TCCRAC	1 cut(s)	756
MnlI	CCTC	9 cut(s)	8, 70, 90, 205, 385, 509, 520, 553, 562
Mox20I	TGGCCA	1 cut(s)	687
MscI	TGGCCA	1 cut(s)	687
MseI	TTAA	2 cut(s)	162, 189
MslI	CAYNNNNRTG	3 cut(s)	681, 687, 843
Msp20I	TGGCCA	1 cut(s)	687
MspI	CCGG	1 cut(s)	387
MspR9I	CCNGG	2 cut(s)	388, 791
Mva1269I	GAATGC	1 cut(s)	751
MvaI	CCWGG	1 cut(s)	791
NciI	CCSGG	1 cut(s)	388
NcoI	CCATGG	2 cut(s)	22, 688
NdeII	GATC	6 cut(s)	8, 303, 324, 622, 773, 823
NlaIV	GGNNCC	2 cut(s)	541, 604
NmeAIII	GCCGAG	1 cut(s)	447
NsbI	TGCGCA	1 cut(s)	299
NspI	RCATGY	4 cut(s)	320, 709, 771, 842
PctI	GAATGC	1 cut(s)	751
PfeI	GAWTC	1 cut(s)	291
PflMI	CCANNNNNTGG	1 cut(s)	866
PleI	GAGTC	1 cut(s)	577
PpsI	GAGTC	1 cut(s)	577
PpuMI	RGGWCCY	1 cut(s)	540
Psp1406I	AACGTT	2 cut(s)	159, 186
Psp5II	RGGWCCY	1 cut(s)	540
Psp6I	CCWGG	1 cut(s)	789
PspFI	CCCAGC	1 cut(s)	783
PspGI	CCWGG	1 cut(s)	789
PspN4I	GGNNCC	2 cut(s)	541, 604
PspPI	GGNCC	3 cut(s)	453, 540, 857
PspPPI	RGGWCCY	1 cut(s)	540
PstI	CTGCAG	1 cut(s)	763
PsuI	RGATCY	2 cut(s)	303, 324
RsaI	GTAC	4 cut(s)	371, 592, 604, 635
RsaNI	GTAC	4 cut(s)	370, 591, 603, 634
RseI	CAYNNNNRTG	3 cut(s)	681, 687, 843
SaqAI	TTAA	2 cut(s)	162, 189
Sau3AI	GATC	6 cut(s)	8, 303, 324, 622, 773, 823
Sau96I	GGNCC	3 cut(s)	453, 540, 857
ScaI	AGTACT	1 cut(s)	635
SchI	GAGTC	1 cut(s)	578
ScrFI	CCNGG	2 cut(s)	388, 791
SfcI	CTRYAG	1 cut(s)	759
SinI	GGWCC	2 cut(s)	540, 857
SmiMI	CAYNNNNRTG	3 cut(s)	681, 687, 843
SpeI	ACTAGT	1 cut(s)	593
SsiI	CCGC	6 cut(s)	39, 511, 587, 653, 662, 807
SspMI	CTAG	1 cut(s)	594
StyD4I	CCNGG	2 cut(s)	386, 789
StyI	CCWWGG	4 cut(s)	22, 339, 573, 688
TaaI	ACNGT	2 cut(s)	263, 518
TaiI	ACGT	4 cut(s)	96, 162, 189, 447
TatI	WGTACW	2 cut(s)	369, 633
TauI	GCSGC	3 cut(s)	656, 665, 809
TfiI	GAWTC	1 cut(s)	291
Tru1I	TTAA	2 cut(s)	162, 189
Tru9I	TTAA	2 cut(s)	162, 189
TscAI	CASTG	2 cut(s)	229, 439
TspDTI	ATGAA	4 cut(s)	17, 125, 370, 662
TspGWI	ACGGA	1 cut(s)	715
TspRI	CASTG	2 cut(s)	229, 439
Van91I	CCANNNNNTGG	1 cut(s)	866
VpaK11BI	GGWCC	2 cut(s)	540, 857
XceI	RCATGY	4 cut(s)	320, 709, 771, 842
XcmI	CCANNNNNNNNNTGG	3 cut(s)	635, 695, 791
XspI	CTAG	1 cut(s)	594
ZrmI	AGTACT	1 cut(s)	635

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.