Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0008922

Physical Location & Seq

Genomic Coordinates Forward (+)

29357364 .. 29360886

Gene Structure 3523 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g28870.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 855 bp

ATGGAACGATCAGGAGGTTACCATGGCTATCAAAAGACCACGACTACCCCAAACACAACCTCTGCTTCTGGGCTGAAACTATCAGATATCAACGTTCGGCCGGCTGAGATGAACCAATACAGCATGGGGATGGGGAGACAAACTACCACCACCACCAACGTTAACAATGTTGTTAACAACTCCTCCAATGCCAATACCACGAATGGCACTGCCGATGATAACGAGTGCATGGTGCGAGAGCAAGACCGTTTCATGCCGATAGCCAATGTGATAAGAATCATGCGCAAGATCCTACCCCCACATGCCAAGATCTCCGACGACGCCAAGGAAACCATCCAAGAGTGCGTCTCCGAGTACATCAGCTTCATCACCGGGGAGGCCAACGAGCGCTGCCAGCGCGAGCAGCGCAAGACCATCACTGCTGAAGACGTGCTGTGGGCCATGAGCAAGCTCGGCTTTGATGACTACATCGAGCCACTCACCCTCTACCTGCACCGCTACCGCGAGATGGAGGGCGAGCGTGGGTCCTCCACGACCTCCTTAATGAGAAGCGAGTCCTTGGCCAAGGGGGCGGGTACTAGTAGTGGTACCAGCAGCAGGGCAATTGATCACCACCAGTACTATGGCACCTCTATGGCGGCGGCTGCTGCTGCTTTTCATCATCAGCATGGTCATGGATTTTTCGGGTACATGAACCCCTCCGATGCGTGGGTCTCCAACAATAATGTGAATGCTGCTTCTGCTGCCGCAGCATCTGGATTGTCCACACAGCTCCAGGGTGGTGGTTCTGCCGCAATGCTAAATGGTGATCACCATCAGCTGCCACATGCAAATGGTGCAAACGGTGGAGCGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0033613 GO:0033993 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

285

Amino Acids

30.7

Weight (kDa)

6.17

Isoelectric Point (pI)

28.31

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	73 - 148	1.1e-06	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	84 - 148	6.8e-26	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47670 AT5G47670 AT5G47670
fragaria_vesca	FvH4_3g00320 FvH4_3g00320 FvH4_3g11540
malus_domestica	MD05G1361600.v1.1 MD10G1339000.v1.1
prunus_persica	Prupe.4G003800_v2.0.a1 Prupe.4G003800_v2.0.a1
pyrus_communis	pycom05g32810 pycom10g28870
rosa_chinensis	RchiOBHm_Chr5g0000501
rosa_laevigata	RLG00000030872
rosa_multiflora	Rmu_sc0003949.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075680
rosa_rugosa	Rorug04G0384300
rosa_samantha	Rh5AG004100 Rh5BG005500 Rh5CG004500 Rh5DG004400
rosa_wichuraiana	Rw5G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	284
Acc36I	ACCTGC	1 cut(s)	498
Acc65I	GGTACC	1 cut(s)	587
AccB1I	GGYRCC	2 cut(s)	587, 626
AccII	CGCG	2 cut(s)	399, 504
AciI	CCGC	7 cut(s)	496, 502, 572, 638, 641, 747, 792
AclI	AACGTT	2 cut(s)	93, 159
AclWI	GGATC	1 cut(s)	283
AcoI	YGGCCR	2 cut(s)	98, 561
AcuI	CTGAAG	1 cut(s)	444
AcyI	GRCGYC	1 cut(s)	321
AfaI	GTAC	5 cut(s)	356, 577, 589, 620, 689
AfeI	AGCGCT	1 cut(s)	389
AfiI	CCNNNNNNNGG	3 cut(s)	508, 597, 708
AhlI	ACTAGT	1 cut(s)	578
AjiI	CACGTC	1 cut(s)	430
AjnI	CCWGG	1 cut(s)	774
AluBI	AGCT	4 cut(s)	363, 451, 772, 820
AluI	AGCT	4 cut(s)	363, 451, 772, 820
Alw26I	GTCTC	3 cut(s)	130, 352, 718
AlwI	GGATC	1 cut(s)	283
AlwNI	CAGNNNCTG	1 cut(s)	755
Aor51HI	AGCGCT	1 cut(s)	389
AoxI	GGCC	4 cut(s)	98, 378, 438, 561
Asp718I	GGTACC	1 cut(s)	587
AspLEI	GCGC	4 cut(s)	285, 390, 399, 408
AspS9I	GGNCC	2 cut(s)	438, 525
AsuC2I	CCSGG	1 cut(s)	373
AsuHPI	GGTGA	5 cut(s)	361, 472, 602, 803, 818
AvaII	GGWCC	1 cut(s)	525
BalI	TGGCCA	1 cut(s)	563
BanI	GGYRCC	2 cut(s)	587, 626
BarI	GAAGNNNNNNTAC	2 cut(s)	347, 379
BbsI	GAAGAC	1 cut(s)	432
BccI	CCATC	5 cut(s)	124, 341, 422, 502, 822
BciT130I	CCWGG	1 cut(s)	776
BclI	TGATCA	2 cut(s)	607, 808
BcnI	CCSGG	1 cut(s)	373
BcoDI	GTCTC	3 cut(s)	130, 352, 718
BcuI	ACTAGT	1 cut(s)	578
BfaI	CTAG	1 cut(s)	579
BfoI	RGCGCY	1 cut(s)	391
BfuAI	ACCTGC	1 cut(s)	498
BglI	GCCNNNNNGGC	1 cut(s)	569
BglII	AGATCT	1 cut(s)	309
BmcAI	AGTACT	1 cut(s)	620
Bme1390I	CCNGG	2 cut(s)	373, 776
Bme18I	GGWCC	1 cut(s)	525
BmgBI	CACGTC	1 cut(s)	430
BmgT120I	GGNCC	2 cut(s)	438, 525
BmiI	GGNNCC	3 cut(s)	526, 589, 628
BmrFI	CCNGG	2 cut(s)	373, 776
BmsI	GCATC	2 cut(s)	694, 761
BpiI	GAAGAC	1 cut(s)	432
BplI	GAGNNNNNCTC	2 cut(s)	332, 364
BpmI	CTGGAG	1 cut(s)	758
BpuMI	CCSGG	1 cut(s)	373
BsaBI	GATNNNNATC	2 cut(s)	275, 813
BsaHI	GRCGYC	1 cut(s)	321
BsaI	GGTCTC	1 cut(s)	718
BsaJI	CCNNGG	6 cut(s)	22, 324, 372, 558, 564, 775
BsaXI	ACNNNNNCTCC	2 cut(s)	167, 197
Bsc4I	CCNNNNNNNGG	3 cut(s)	508, 597, 708
Bse118I	RCCGGY	1 cut(s)	100
Bse1I	ACTGG	1 cut(s)	616
Bse3DI	GCAATG	1 cut(s)	801
Bse8I	GATNNNNATC	2 cut(s)	275, 813
BseBI	CCWGG	1 cut(s)	776
BseDI	CCNNGG	6 cut(s)	22, 324, 372, 558, 564, 775
BseGI	GGATG	2 cut(s)	135, 333
BseJI	GATNNNNATC	2 cut(s)	275, 813
BseLI	CCNNNNNNNGG	3 cut(s)	508, 597, 708
BseMI	GCAATG	1 cut(s)	801
BseMII	CTCAG	1 cut(s)	96
BseNI	ACTGG	1 cut(s)	616
BseRI	GAGGAG	1 cut(s)	172
BseX3I	CGGCCG	1 cut(s)	98
BsgI	GTGCAG	1 cut(s)	476
Bsh1236I	CGCG	2 cut(s)	399, 504
Bsh1285I	CGRYCG	1 cut(s)	101
BshFI	GGCC	4 cut(s)	100, 380, 440, 563
BshNI	GGYRCC	2 cut(s)	587, 626
BsiEI	CGRYCG	1 cut(s)	101
BsiSI	CCGG	2 cut(s)	101, 372
BslI	CCNNNNNNNGG	3 cut(s)	508, 597, 708
BsmAI	GTCTC	3 cut(s)	130, 352, 718
BsmBI	CGTCTC	1 cut(s)	352
BsmI	GAATGC	1 cut(s)	736
BsnI	GGCC	4 cut(s)	100, 380, 440, 563
Bso31I	GGTCTC	1 cut(s)	718
Bsp143I	GATC	5 cut(s)	8, 288, 309, 607, 808
Bsp19I	CCATGG	1 cut(s)	22
BspACI	CCGC	7 cut(s)	496, 502, 572, 638, 641, 747, 792
BspANI	GGCC	4 cut(s)	100, 380, 440, 563
BspCNI	CTCAG	1 cut(s)	97
BspFNI	CGCG	2 cut(s)	399, 504
BspLI	GGNNCC	3 cut(s)	526, 589, 628
BspMI	ACCTGC	1 cut(s)	498
BspPI	GGATC	1 cut(s)	283
BspT107I	GGYRCC	2 cut(s)	587, 626
BspTNI	GGTCTC	1 cut(s)	718
BsrDI	GCAATG	1 cut(s)	801
BsrFI	RCCGGY	1 cut(s)	100
BsrI	ACTGG	1 cut(s)	616
BssAI	RCCGGY	1 cut(s)	100
BssECI	CCNNGG	6 cut(s)	22, 324, 372, 558, 564, 775
BssMI	GATC	5 cut(s)	8, 288, 309, 607, 808
BssNI	GRCGYC	1 cut(s)	321
BssT1I	CCWWGG	4 cut(s)	22, 324, 558, 564
Bst2UI	CCWGG	1 cut(s)	776
Bst4CI	ACNGT	2 cut(s)	248, 845
BstACI	GRCGYC	1 cut(s)	321
BstAPI	GCANNNNNTGC	1 cut(s)	836
BstC8I	GCNNGC	5 cut(s)	102, 395, 401, 449, 518
BstDEI	CTNAG	1 cut(s)	105
BstDSI	CCRYGG	1 cut(s)	22
BstEII	GGTNACC	1 cut(s)	17
BstF5I	GGATG	2 cut(s)	135, 333
BstFNI	CGCG	2 cut(s)	399, 504
BstH2I	RGCGCY	1 cut(s)	391
BstHHI	GCGC	4 cut(s)	285, 390, 399, 408
BstKTI	GATC	5 cut(s)	11, 291, 312, 610, 811
BstMAI	GTCTC	3 cut(s)	130, 352, 718
BstMBI	GATC	5 cut(s)	8, 288, 309, 607, 808
BstMCI	CGRYCG	1 cut(s)	101
BstNI	CCWGG	1 cut(s)	776
BstNSI	RCATGY	2 cut(s)	305, 830
BstPI	GGTNACC	1 cut(s)	17
BstSCI	CCNGG	2 cut(s)	371, 774
BstUI	CGCG	2 cut(s)	399, 504
BstV2I	GAAGAC	1 cut(s)	432
BstX2I	RGATCY	2 cut(s)	288, 309
BstXI	CCANNNNNNTGG	2 cut(s)	623, 782
BstYI	RGATCY	2 cut(s)	288, 309
BstZI	CGGCCG	1 cut(s)	98
BsuRI	GGCC	4 cut(s)	100, 380, 440, 563
BtgI	CCRYGG	1 cut(s)	22
BtrI	CACGTC	1 cut(s)	430
BtsCI	GGATG	2 cut(s)	135, 333
BtsI	GCAGTG	2 cut(s)	207, 417
BtsIMutI	CAGTG	2 cut(s)	207, 417
BveI	ACCTGC	1 cut(s)	498
Cac8I	GCNNGC	5 cut(s)	102, 395, 401, 449, 518
CaiI	CAGNNNCTG	1 cut(s)	755
CfoI	GCGC	4 cut(s)	285, 390, 399, 408
Cfr10I	RCCGGY	1 cut(s)	100
Cfr13I	GGNCC	2 cut(s)	438, 525
CseI	GACGC	2 cut(s)	329, 334
Csp6I	GTAC	5 cut(s)	355, 576, 588, 619, 688
CviQI	GTAC	5 cut(s)	355, 576, 588, 619, 688
DdeI	CTNAG	1 cut(s)	105
DpnI	GATC	5 cut(s)	10, 290, 311, 609, 810
DpnII	GATC	5 cut(s)	8, 288, 309, 607, 808
EaeI	YGGCCR	2 cut(s)	98, 561
EagI	CGGCCG	1 cut(s)	98
EclXI	CGGCCG	1 cut(s)	98
Eco130I	CCWWGG	4 cut(s)	22, 324, 558, 564
Eco31I	GGTCTC	1 cut(s)	718
Eco32I	GATATC	1 cut(s)	88
Eco47I	GGWCC	1 cut(s)	525
Eco47III	AGCGCT	1 cut(s)	389
Eco52I	CGGCCG	1 cut(s)	98
Eco57I	CTGAAG	1 cut(s)	444
Eco91I	GGTNACC	1 cut(s)	17
EcoO109I	RGGNCCY	1 cut(s)	525
EcoO65I	GGTNACC	1 cut(s)	17
EcoRII	CCWGG	1 cut(s)	774
EcoRV	GATATC	1 cut(s)	88
EcoT14I	CCWWGG	4 cut(s)	22, 324, 558, 564
ErhI	CCWWGG	4 cut(s)	22, 324, 558, 564
Esp3I	CGTCTC	1 cut(s)	352
FalI	AAGNNNNNCTT	2 cut(s)	440, 472
FauI	CCCGC	1 cut(s)	565
FbaI	TGATCA	2 cut(s)	607, 808
FokI	GGATG	2 cut(s)	142, 320
FspBI	CTAG	1 cut(s)	579
FspI	TGCGCA	1 cut(s)	284
GlaI	GCGC	4 cut(s)	284, 389, 398, 407
GsuI	CTGGAG	1 cut(s)	758
HaeII	RGCGCY	1 cut(s)	391
HaeIII	GGCC	4 cut(s)	100, 380, 440, 563
HapII	CCGG	2 cut(s)	101, 372
HgaI	GACGC	2 cut(s)	329, 334
HhaI	GCGC	4 cut(s)	285, 390, 399, 408
Hin1I	GRCGYC	1 cut(s)	321
Hin6I	GCGC	4 cut(s)	283, 388, 397, 406
HinP1I	GCGC	4 cut(s)	283, 388, 397, 406
HincII	GTYRAC	2 cut(s)	163, 175
HindII	GTYRAC	2 cut(s)	163, 175
HinfI	GANTC	2 cut(s)	276, 554
HpaI	GTTAAC	2 cut(s)	163, 175
HpaII	CCGG	2 cut(s)	101, 372
HphI	GGTGA	5 cut(s)	361, 472, 602, 803, 818
Hpy166II	GTNNAC	3 cut(s)	163, 175, 765
Hpy188I	TCNGA	4 cut(s)	85, 316, 352, 703
Hpy188III	TCNNGA	2 cut(s)	12, 756
Hpy8I	GTNNAC	3 cut(s)	163, 175, 765
Hpy99I	CGWCG	2 cut(s)	320, 323
HpyCH4III	ACNGT	2 cut(s)	248, 845
HpyCH4IV	ACGT	3 cut(s)	93, 159, 429
HpyCH4V	TGCA	4 cut(s)	228, 493, 830, 839
HpyF3I	CTNAG	1 cut(s)	105
HpySE526I	ACGT	3 cut(s)	93, 159, 429
Hsp92I	GRCGYC	1 cut(s)	321
HspAI	GCGC	4 cut(s)	283, 388, 397, 406
KpnI	GGTACC	1 cut(s)	591
KroI	GCCGGC	1 cut(s)	100
KroNI	GCCGGC	1 cut(s)	102
Ksp22I	TGATCA	2 cut(s)	607, 808
KspAI	GTTAAC	2 cut(s)	163, 175
Kzo9I	GATC	5 cut(s)	8, 288, 309, 607, 808
LmnI	GCTCC	2 cut(s)	777, 848
LweI	GCATC	2 cut(s)	694, 761
MaeI	CTAG	1 cut(s)	579
MaeII	ACGT	3 cut(s)	93, 159, 429
MaeIII	GTNAC	1 cut(s)	17
MalI	GATC	5 cut(s)	10, 290, 311, 609, 810
MboI	GATC	5 cut(s)	8, 288, 309, 607, 808
MboII	GAAGA	1 cut(s)	437
MfeI	CAATTG	1 cut(s)	603
MflI	RGATCY	2 cut(s)	288, 309
MlsI	TGGCCA	1 cut(s)	563
MluCI	AATT	1 cut(s)	603
MluNI	TGGCCA	1 cut(s)	563
MlyI	GAGTC	1 cut(s)	563
MmeI	TCCRAC	2 cut(s)	339, 741
Mox20I	TGGCCA	1 cut(s)	563
MroNI	GCCGGC	1 cut(s)	100
MscI	TGGCCA	1 cut(s)	563
MseI	TTAA	3 cut(s)	162, 174, 542
MslI	CAYNNNNRTG	5 cut(s)	128, 632, 666, 672, 831
Msp20I	TGGCCA	1 cut(s)	563
MspA1I	CMGCKG	1 cut(s)	820
MspI	CCGG	2 cut(s)	101, 372
MspR9I	CCNGG	2 cut(s)	373, 776
MunI	CAATTG	1 cut(s)	603
Mva1269I	GAATGC	1 cut(s)	736
MvaI	CCWGG	1 cut(s)	776
MvnI	CGCG	2 cut(s)	399, 504
NaeI	GCCGGC	1 cut(s)	102
NciI	CCSGG	1 cut(s)	373
NcoI	CCATGG	1 cut(s)	22
NdeII	GATC	5 cut(s)	8, 288, 309, 607, 808
NgoMIV	GCCGGC	1 cut(s)	100
NlaIV	GGNNCC	3 cut(s)	526, 589, 628
NmeAIII	GCCGAG	1 cut(s)	432
NsbI	TGCGCA	1 cut(s)	284
NspI	RCATGY	2 cut(s)	305, 830
PctI	GAATGC	1 cut(s)	736
PdiI	GCCGGC	1 cut(s)	102
PfeI	GAWTC	1 cut(s)	276
PleI	GAGTC	1 cut(s)	562
PpsI	GAGTC	1 cut(s)	562
PpuMI	RGGWCCY	1 cut(s)	525
Psp1406I	AACGTT	2 cut(s)	93, 159
Psp5II	RGGWCCY	1 cut(s)	525
Psp6I	CCWGG	1 cut(s)	774
PspEI	GGTNACC	1 cut(s)	17
PspGI	CCWGG	1 cut(s)	774
PspN4I	GGNNCC	3 cut(s)	526, 589, 628
PspPI	GGNCC	2 cut(s)	438, 525
PspPPI	RGGWCCY	1 cut(s)	525
PstNI	CAGNNNCTG	1 cut(s)	755
PsuI	RGATCY	2 cut(s)	288, 309
PvuII	CAGCTG	1 cut(s)	820
RsaI	GTAC	5 cut(s)	356, 577, 589, 620, 689
RsaNI	GTAC	5 cut(s)	355, 576, 588, 619, 688
RseI	CAYNNNNRTG	5 cut(s)	128, 632, 666, 672, 831
SaqAI	TTAA	3 cut(s)	162, 174, 542
Sau3AI	GATC	5 cut(s)	8, 288, 309, 607, 808
Sau96I	GGNCC	2 cut(s)	438, 525
ScaI	AGTACT	1 cut(s)	620
SchI	GAGTC	1 cut(s)	563
ScrFI	CCNGG	2 cut(s)	373, 776
SfaNI	GCATC	2 cut(s)	694, 761
SinI	GGWCC	1 cut(s)	525
SmiMI	CAYNNNNRTG	5 cut(s)	128, 632, 666, 672, 831
SpeI	ACTAGT	1 cut(s)	578
Sse9I	AATT	1 cut(s)	603
SsiI	CCGC	7 cut(s)	496, 502, 572, 638, 641, 747, 792
SspMI	CTAG	1 cut(s)	579
StyD4I	CCNGG	2 cut(s)	371, 774
StyI	CCWWGG	4 cut(s)	22, 324, 558, 564
TaaI	ACNGT	2 cut(s)	248, 845
TaiI	ACGT	3 cut(s)	96, 162, 432
TaqI	TCGA	1 cut(s)	471
TasI	AATT	1 cut(s)	603
TatI	WGTACW	2 cut(s)	354, 618
TauI	GCSGC	4 cut(s)	641, 644, 749, 794
TfiI	GAWTC	1 cut(s)	276
Tru1I	TTAA	3 cut(s)	162, 174, 542
Tru9I	TTAA	3 cut(s)	162, 174, 542
TscAI	CASTG	2 cut(s)	214, 424
TspDTI	ATGAA	5 cut(s)	125, 241, 355, 647, 707
TspRI	CASTG	2 cut(s)	214, 424
VpaK11BI	GGWCC	1 cut(s)	525
XceI	RCATGY	2 cut(s)	305, 830
XcmI	CCANNNNNNNNNTGG	1 cut(s)	620
XspI	CTAG	1 cut(s)	579
ZrmI	AGTACT	1 cut(s)	620

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.