Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp04

Orthogroup ID

OG0008922

Physical Location & Seq

Genomic Coordinates Reverse (-)

258372 .. 261155

Gene Structure 2784 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.4G003800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 810 bp

ATGGAACGAGGAGGAGGAGGTTTCCATGGCTACCAAAAGACTAGCTCTGGGTTGAAACTATCAGAGATCAACATGAGGGTGGCAGGGATGAATCAATTCAGCATGCAGCAGGGGGGAAAGAGTACTAGCTCCTCTACCACCAATATCAATATCAATAATGTTGTTAGCAACAACAACGTCGTTAACCACCCCACCAGTAGTAATGGTACTACTACTACTACTGATGATAACGAATGCGTGGTGAGAGAGCAAGACCGCTTCATGCCAATAGCCAATGTGATCAGAATCATGCGCAAGATCCTTCCCCCGCATGCCAAGATCTCAGACGATGCCAAGGAAACCATCCAGGAGTGTGTCTCCGAGTACATCAGCTTCATCACTGGGGAGGCCAACGAGCGTTGCCAGCGCGAGCAGCGCAAGACCATCACTGCTGAAGACGTCCTCTGGGCCATGAGCAAGCTCGGCTTCGACGACTACATTGAGCCCCTCACCCTCTATCTCCACCGCTACCGCGAGATGGAGGGGGAGCGTGGCTCTGGCTCCTCCACCACCTCCGTCATGAGAAGCGATACCTCAGTGAAGGGTGCTGCTAGCAGCAGTAGCAGGGCAATAGATCACCACCAGTACTATGCTGCTGCTGCTGCGGCGGCTGCTTTTCATCATCACCATGGCCATGCCTTTTTTGGATACTTAAAGCCATCCGATGCCTCCACCTCCACCAATAATAATATCAATGCTGCTGCTGCTGTCGCCGTGGCCGCTCTGCCATATTGTGATCAGCACCAGCCACATGCAAATGATCGAGCTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0033613 GO:0033993 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

270

Amino Acids

29.4

Weight (kDa)

6.49

Isoelectric Point (pI)

34.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0008922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47670 AT5G47670 AT5G47670
fragaria_vesca	FvH4_3g00320 FvH4_3g00320 FvH4_3g11540
malus_domestica	MD05G1361600.v1.1 MD10G1339000.v1.1
prunus_persica	Prupe.4G003800_v2.0.a1 Prupe.4G003800_v2.0.a1
pyrus_communis	pycom05g32810 pycom10g28870
rosa_chinensis	RchiOBHm_Chr5g0000501
rosa_laevigata	RLG00000030872
rosa_multiflora	Rmu_sc0003949.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075680
rosa_rugosa	Rorug04G0384300
rosa_samantha	Rh5AG004100 Rh5BG005500 Rh5CG004500 Rh5DG004400
rosa_wichuraiana	Rw5G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	441
Acc16I	TGCGCA	1 cut(s)	293
AccBSI	CCGCTC	1 cut(s)	761
AccII	CGCG	2 cut(s)	408, 513
AciI	CCGC	7 cut(s)	256, 308, 505, 511, 644, 647, 759
AclWI	GGATC	1 cut(s)	292
AcoI	YGGCCR	2 cut(s)	670, 756
AcuI	CTGAAG	1 cut(s)	453
AcyI	GRCGYC	1 cut(s)	438
AfaI	GTAC	4 cut(s)	124, 208, 365, 626
AfiI	CCNNNNNNNGG	1 cut(s)	517
AgsI	TTSAA	1 cut(s)	55
AjnI	CCWGG	1 cut(s)	345
AluBI	AGCT	5 cut(s)	45, 129, 372, 460, 806
AluI	AGCT	5 cut(s)	45, 129, 372, 460, 806
Alw26I	GTCTC	1 cut(s)	361
AlwI	GGATC	1 cut(s)	292
AoxI	GGCC	4 cut(s)	387, 447, 670, 756
Asp700I	GAANNNNTTC	1 cut(s)	95
AspLEI	GCGC	3 cut(s)	294, 408, 417
AspS9I	GGNCC	1 cut(s)	447
AsuHPI	GGTGA	4 cut(s)	253, 481, 608, 656
AsuNHI	GCTAGC	1 cut(s)	590
BaeI	ACNNNNGTAYC	2 cut(s)	561, 594
BalI	TGGCCA	1 cut(s)	672
BanII	GRGCYC	1 cut(s)	486
BarI	GAAGNNNNNNTAC	2 cut(s)	356, 388
BbsI	GAAGAC	1 cut(s)	441
BccI	CCATC	4 cut(s)	350, 431, 511, 706
BceAI	ACGGC	1 cut(s)	737
BciT130I	CCWGG	1 cut(s)	347
BciVI	GTATCC	1 cut(s)	680
BclI	TGATCA	2 cut(s)	279, 775
BcoDI	GTCTC	1 cut(s)	361
BfaI	CTAG	3 cut(s)	42, 126, 591
BfuI	GTATCC	1 cut(s)	680
BglII	AGATCT	1 cut(s)	318
BmcAI	AGTACT	2 cut(s)	124, 626
Bme1390I	CCNGG	1 cut(s)	347
BmgT120I	GGNCC	1 cut(s)	447
BmiI	GGNNCC	1 cut(s)	541
BmrFI	CCNGG	1 cut(s)	347
BmrI	ACTGGG	1 cut(s)	390
BmsI	GCATC	2 cut(s)	319, 694
BmtI	GCTAGC	1 cut(s)	594
BmuI	ACTGGG	1 cut(s)	390
BpiI	GAAGAC	1 cut(s)	441
BplI	GAGNNNNNCTC	4 cut(s)	341, 373, 518, 550
BsaBI	GATNNNNATC	1 cut(s)	284
BsaHI	GRCGYC	1 cut(s)	438
BsaJI	CCNNGG	4 cut(s)	25, 333, 667, 753
Bsc4I	CCNNNNNNNGG	1 cut(s)	517
Bse1I	ACTGG	3 cut(s)	195, 385, 622
Bse8I	GATNNNNATC	1 cut(s)	284
BseBI	CCWGG	1 cut(s)	347
BseDI	CCNNGG	4 cut(s)	25, 333, 667, 753
BseGI	GGATG	3 cut(s)	93, 342, 698
BseJI	GATNNNNATC	1 cut(s)	284
BseLI	CCNNNNNNNGG	1 cut(s)	517
BseMII	CTCAG	2 cut(s)	336, 588
BseNI	ACTGG	3 cut(s)	195, 385, 622
BseRI	GAGGAG	5 cut(s)	24, 27, 30, 121, 532
Bsh1236I	CGCG	2 cut(s)	408, 513
BshFI	GGCC	4 cut(s)	389, 449, 672, 758
BslI	CCNNNNNNNGG	1 cut(s)	517
BsmAI	GTCTC	1 cut(s)	361
BsmI	GAATGC	1 cut(s)	239
BsnI	GGCC	4 cut(s)	389, 449, 672, 758
Bsp1286I	GDGCHC	1 cut(s)	486
Bsp143I	GATC	7 cut(s)	66, 279, 297, 318, 613, 775, 799
Bsp19I	CCATGG	2 cut(s)	25, 667
BspACI	CCGC	7 cut(s)	256, 308, 505, 511, 644, 647, 759
BspANI	GGCC	4 cut(s)	389, 449, 672, 758
BspCNI	CTCAG	2 cut(s)	335, 587
BspFNI	CGCG	2 cut(s)	408, 513
BspHI	TCATGA	1 cut(s)	558
BspLI	GGNNCC	1 cut(s)	541
BspOI	GCTAGC	1 cut(s)	594
BspPI	GGATC	1 cut(s)	292
BsrBI	CCGCTC	1 cut(s)	761
BsrI	ACTGG	3 cut(s)	195, 385, 622
BssECI	CCNNGG	4 cut(s)	25, 333, 667, 753
BssMI	GATC	7 cut(s)	66, 279, 297, 318, 613, 775, 799
BssNI	GRCGYC	1 cut(s)	438
BssT1I	CCWWGG	3 cut(s)	25, 333, 667
Bst2UI	CCWGG	1 cut(s)	347
BstACI	GRCGYC	1 cut(s)	438
BstC8I	GCNNGC	6 cut(s)	104, 312, 404, 410, 458, 592
BstDEI	CTNAG	2 cut(s)	322, 574
BstDSI	CCRYGG	3 cut(s)	25, 667, 753
BstF5I	GGATG	3 cut(s)	93, 342, 698
BstFNI	CGCG	2 cut(s)	408, 513
BstHHI	GCGC	3 cut(s)	294, 408, 417
BstKTI	GATC	7 cut(s)	69, 282, 300, 321, 616, 778, 802
BstMAI	GTCTC	1 cut(s)	361
BstMBI	GATC	7 cut(s)	66, 279, 297, 318, 613, 775, 799
BstNI	CCWGG	1 cut(s)	347
BstNSI	RCATGY	3 cut(s)	106, 314, 794
BstSCI	CCNGG	1 cut(s)	345
BstUI	CGCG	2 cut(s)	408, 513
BstV2I	GAAGAC	1 cut(s)	441
BstX2I	RGATCY	2 cut(s)	297, 318
BstYI	RGATCY	2 cut(s)	297, 318
BsuI	GTATCC	1 cut(s)	680
BsuRI	GGCC	4 cut(s)	389, 449, 672, 758
BtgI	CCRYGG	3 cut(s)	25, 667, 753
BtsCI	GGATG	3 cut(s)	93, 342, 698
BtsI	GCAGTG	1 cut(s)	426
BtsIMutI	CAGTG	3 cut(s)	378, 426, 582
Cac8I	GCNNGC	6 cut(s)	104, 312, 404, 410, 458, 592
CciI	TCATGA	1 cut(s)	558
CfoI	GCGC	3 cut(s)	294, 408, 417
Cfr13I	GGNCC	1 cut(s)	447
Csp6I	GTAC	4 cut(s)	123, 207, 364, 625
CviQI	GTAC	4 cut(s)	123, 207, 364, 625
DdeI	CTNAG	2 cut(s)	322, 574
DpnI	GATC	7 cut(s)	68, 281, 299, 320, 615, 777, 801
DpnII	GATC	7 cut(s)	66, 279, 297, 318, 613, 775, 799
EaeI	YGGCCR	2 cut(s)	670, 756
Eco130I	CCWWGG	3 cut(s)	25, 333, 667
Eco24I	GRGCYC	1 cut(s)	486
Eco57I	CTGAAG	1 cut(s)	453
EcoRII	CCWGG	1 cut(s)	345
EcoT14I	CCWWGG	3 cut(s)	25, 333, 667
EcoT38I	GRGCYC	1 cut(s)	486
ErhI	CCWWGG	3 cut(s)	25, 333, 667
FalI	AAGNNNNNCTT	2 cut(s)	449, 481
FauI	CCCGC	1 cut(s)	315
FbaI	TGATCA	2 cut(s)	279, 775
FokI	GGATG	3 cut(s)	100, 329, 685
FriOI	GRGCYC	1 cut(s)	486
FspBI	CTAG	3 cut(s)	42, 126, 591
FspI	TGCGCA	1 cut(s)	293
GlaI	GCGC	3 cut(s)	293, 407, 416
HaeIII	GGCC	4 cut(s)	389, 449, 672, 758
HhaI	GCGC	3 cut(s)	294, 408, 417
Hin1I	GRCGYC	1 cut(s)	438
Hin6I	GCGC	3 cut(s)	292, 406, 415
HinP1I	GCGC	3 cut(s)	292, 406, 415
HincII	GTYRAC	1 cut(s)	184
HindII	GTYRAC	1 cut(s)	184
HinfI	GANTC	2 cut(s)	91, 285
HpaI	GTTAAC	1 cut(s)	184
HphI	GGTGA	4 cut(s)	253, 481, 608, 656
Hpy166II	GTNNAC	1 cut(s)	184
Hpy188I	TCNGA	5 cut(s)	64, 284, 325, 361, 703
Hpy188III	TCNNGA	1 cut(s)	559
Hpy8I	GTNNAC	1 cut(s)	184
Hpy99I	CGWCG	2 cut(s)	182, 473
HpyAV	CCTTC	2 cut(s)	311, 574
HpyCH4IV	ACGT	2 cut(s)	177, 438
HpyCH4V	TGCA	2 cut(s)	106, 794
HpyF3I	CTNAG	2 cut(s)	322, 574
HpySE526I	ACGT	2 cut(s)	177, 438
Hsp92I	GRCGYC	1 cut(s)	438
HspAI	GCGC	3 cut(s)	292, 406, 415
Ksp22I	TGATCA	2 cut(s)	279, 775
KspAI	GTTAAC	1 cut(s)	184
Kzo9I	GATC	7 cut(s)	66, 279, 297, 318, 613, 775, 799
LmnI	GCTCC	3 cut(s)	134, 526, 545
LweI	GCATC	2 cut(s)	319, 694
MaeI	CTAG	3 cut(s)	42, 126, 591
MaeII	ACGT	2 cut(s)	177, 438
MalI	GATC	7 cut(s)	68, 281, 299, 320, 615, 777, 801
MbiI	CCGCTC	1 cut(s)	761
MboI	GATC	7 cut(s)	66, 279, 297, 318, 613, 775, 799
MboII	GAAGA	1 cut(s)	446
MflI	RGATCY	2 cut(s)	297, 318
MhlI	GDGCHC	1 cut(s)	486
MlsI	TGGCCA	1 cut(s)	672
MluCI	AATT	1 cut(s)	95
MluNI	TGGCCA	1 cut(s)	672
Mox20I	TGGCCA	1 cut(s)	672
MroXI	GAANNNNTTC	1 cut(s)	95
MscI	TGGCCA	1 cut(s)	672
MseI	TTAA	3 cut(s)	183, 692, 808
MslI	CAYNNNNRTG	4 cut(s)	77, 666, 672, 795
Msp20I	TGGCCA	1 cut(s)	672
MspR9I	CCNGG	1 cut(s)	347
Mva1269I	GAATGC	1 cut(s)	239
MvaI	CCWGG	1 cut(s)	347
MvnI	CGCG	2 cut(s)	408, 513
NcoI	CCATGG	2 cut(s)	25, 667
NdeII	GATC	7 cut(s)	66, 279, 297, 318, 613, 775, 799
NheI	GCTAGC	1 cut(s)	590
NlaIV	GGNNCC	1 cut(s)	541
NmeAIII	GCCGAG	1 cut(s)	441
NsbI	TGCGCA	1 cut(s)	293
NspI	RCATGY	3 cut(s)	106, 314, 794
PaeI	GCATGC	2 cut(s)	106, 314
PagI	TCATGA	1 cut(s)	558
PcsI	WCGNNNNNNNCGW	1 cut(s)	468
PctI	GAATGC	1 cut(s)	239
PdmI	GAANNNNTTC	1 cut(s)	95
PfeI	GAWTC	2 cut(s)	91, 285
PfoI	TCCNGGA	1 cut(s)	345
Psp6I	CCWGG	1 cut(s)	345
PspGI	CCWGG	1 cut(s)	345
PspN4I	GGNNCC	1 cut(s)	541
PspPI	GGNCC	1 cut(s)	447
PsuI	RGATCY	2 cut(s)	297, 318
RsaI	GTAC	4 cut(s)	124, 208, 365, 626
RsaNI	GTAC	4 cut(s)	123, 207, 364, 625
RseI	CAYNNNNRTG	4 cut(s)	77, 666, 672, 795
SaqAI	TTAA	3 cut(s)	183, 692, 808
Sau3AI	GATC	7 cut(s)	66, 279, 297, 318, 613, 775, 799
Sau96I	GGNCC	1 cut(s)	447
ScaI	AGTACT	2 cut(s)	124, 626
ScrFI	CCNGG	1 cut(s)	347
SduI	GDGCHC	1 cut(s)	486
SfaNI	GCATC	2 cut(s)	319, 694
SmiMI	CAYNNNNRTG	4 cut(s)	77, 666, 672, 795
SphI	GCATGC	2 cut(s)	106, 314
Sse9I	AATT	1 cut(s)	95
SsiI	CCGC	7 cut(s)	256, 308, 505, 511, 644, 647, 759
SspMI	CTAG	3 cut(s)	42, 126, 591
StyD4I	CCNGG	1 cut(s)	345
StyI	CCWWGG	3 cut(s)	25, 333, 667
TaiI	ACGT	2 cut(s)	180, 441
TaqI	TCGA	2 cut(s)	468, 802
TasI	AATT	1 cut(s)	95
TatI	WGTACW	3 cut(s)	122, 363, 624
TauI	GCSGC	3 cut(s)	647, 650, 761
TfiI	GAWTC	2 cut(s)	91, 285
Tru1I	TTAA	3 cut(s)	183, 692, 808
Tru9I	TTAA	3 cut(s)	183, 692, 808
TscAI	CASTG	3 cut(s)	385, 433, 582
TspDTI	ATGAA	4 cut(s)	104, 250, 364, 647
TspGWI	ACGGA	1 cut(s)	544
TspRI	CASTG	3 cut(s)	385, 433, 582
XceI	RCATGY	3 cut(s)	106, 314, 794
XcmI	CCANNNNNNNNNTGG	1 cut(s)	680
XmnI	GAANNNNTTC	1 cut(s)	95
XspI	CTAG	3 cut(s)	42, 126, 591
ZraI	GACGTC	1 cut(s)	439
ZrmI	AGTACT	2 cut(s)	124, 626

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.