Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000001

Orthogroup ID

OG0008922

Physical Location & Seq

Genomic Coordinates Forward (+)

96326330 .. 96327964

Gene Structure 1635 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_1G00075680.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 708 bp

ATGGAACAGGGAGGTTTCCATGGCTACCAAAAGATCCAAAACACGAGCTCCGGGCTGAAACTGTCAGAGATCAACATGAGGCTGGCTGAGATCAACCACACCAAGAATAGCGCTGCTATCACCAACAATGGTGCTGCTGCTGATGAGAATGAATGCACTGTGCGAGAGCAAGACCGTTTCATGCCCATTGCCAATGTGATCAGAATCATGCGCAAGATCCTGCCCCCGCATGCCAAGATCTCAGACGACGCCAAGGAAACAATCCAAGAGTGTGTCTCAGAGTACATCAGCTTCATCACAGGGGAGGCCAATGAGCGTTGCCAGCGTGAGCAGCGCAAGACCATTACTGCCGAAGACGTGCTGTGGGCAATGAGCAAGCTGGGGTTCGATGACTACATTGAGCCCCTCACTCTCTACCTCCACCGCTTCCGCGAGATGGAGGGAGATCGTGGCTCCATGAGGGCCGAGACTTTGATGAAAACTAGTAGTAGGGCAATGACTGCGGCAGAGTATCATGCAGCTGCAGCAGGCTCTTTCGCTGGTTTTGCTCCTTTTCATCACCATGGCTTTTTCGGATACTTGAAGGATGCGTCCATATCCAATGGGGCAGCTGGTACATCTTTGTCCCAGCAGGCTAATGCTGTTGCTGCAATGGCAAATGGTGATCACCAGGCACCACATTCCCAGTATGATGATAACAATAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0033613 GO:0033993 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

235

Amino Acids

26.01

Weight (kDa)

5.92

Isoelectric Point (pI)

31.48

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	46 - 124	2.7e-07	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	60 - 124	4.9e-26	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47670 AT5G47670 AT5G47670
fragaria_vesca	FvH4_3g00320 FvH4_3g00320 FvH4_3g11540
malus_domestica	MD05G1361600.v1.1 MD10G1339000.v1.1
prunus_persica	Prupe.4G003800_v2.0.a1 Prupe.4G003800_v2.0.a1
pyrus_communis	pycom05g32810 pycom10g28870
rosa_chinensis	RchiOBHm_Chr5g0000501
rosa_laevigata	RLG00000030872
rosa_multiflora	Rmu_sc0003949.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075680
rosa_rugosa	Rorug04G0384300
rosa_samantha	Rh5AG004100 Rh5BG005500 Rh5CG004500 Rh5DG004400
rosa_wichuraiana	Rw5G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	212
AccB1I	GGYRCC	1 cut(s)	673
AccII	CGCG	1 cut(s)	432
AciI	CCGC	4 cut(s)	227, 424, 430, 503
AclWI	GGATC	2 cut(s)	28, 211
AcyI	GRCGYC	1 cut(s)	249
AfaI	GTAC	2 cut(s)	284, 616
AfeI	AGCGCT	1 cut(s)	112
AfiI	CCNNNNNNNGG	1 cut(s)	436
AgsI	TTSAA	1 cut(s)	583
AhlI	ACTAGT	1 cut(s)	482
AjiI	CACGTC	1 cut(s)	358
AjnI	CCWGG	1 cut(s)	669
AluBI	AGCT	5 cut(s)	48, 291, 379, 521, 611
AluI	AGCT	5 cut(s)	48, 291, 379, 521, 611
Alw21I	GWGCWC	1 cut(s)	50
Alw26I	GTCTC	2 cut(s)	280, 461
AlwI	GGATC	2 cut(s)	28, 211
Aor51HI	AGCGCT	1 cut(s)	112
AoxI	GGCC	2 cut(s)	306, 462
ApeKI	GCWGC	9 cut(s)	113, 134, 137, 331, 518, 521, 524, 608, 647
AspLEI	GCGC	3 cut(s)	113, 213, 336
AspS9I	GGNCC	1 cut(s)	462
AsuC2I	CCSGG	1 cut(s)	52
AsuHPI	GGTGA	4 cut(s)	112, 551, 659, 674
BanI	GGYRCC	1 cut(s)	673
BanII	GRGCYC	2 cut(s)	50, 405
BarI	GAAGNNNNNNTAC	2 cut(s)	275, 307
BauI	CACGAG	1 cut(s)	43
BbsI	GAAGAC	1 cut(s)	360
Bbv12I	GWGCWC	1 cut(s)	50
BbvI	GCAGC	9 cut(s)	100, 121, 124, 343, 508, 530, 536, 620, 634
BccI	CCATC	1 cut(s)	430
BciT130I	CCWGG	1 cut(s)	671
BciVI	GTATCC	1 cut(s)	569
BclI	TGATCA	2 cut(s)	198, 664
BcnI	CCSGG	1 cut(s)	52
BcoDI	GTCTC	2 cut(s)	280, 461
BcuI	ACTAGT	1 cut(s)	482
BfaI	CTAG	1 cut(s)	483
BfmI	CTRYAG	1 cut(s)	522
BfoI	RGCGCY	1 cut(s)	114
BfuI	GTATCC	1 cut(s)	569
BglII	AGATCT	1 cut(s)	237
Bme1390I	CCNGG	2 cut(s)	52, 671
BmgBI	CACGTC	1 cut(s)	358
BmgT120I	GGNCC	1 cut(s)	462
BmiI	GGNNCC	2 cut(s)	454, 675
BmrFI	CCNGG	2 cut(s)	52, 671
BmrI	ACTGGG	1 cut(s)	679
BmsI	GCATC	1 cut(s)	577
BmuI	ACTGGG	1 cut(s)	679
BpiI	GAAGAC	1 cut(s)	360
BplI	GAGNNNNNCTC	2 cut(s)	260, 292
BpuMI	CCSGG	1 cut(s)	52
BsaBI	GATNNNNATC	1 cut(s)	203
BsaHI	GRCGYC	1 cut(s)	249
BsaJI	CCNNGG	3 cut(s)	19, 252, 562
BsaXI	ACNNNNNCTCC	2 cut(s)	32, 62
Bsc4I	CCNNNNNNNGG	1 cut(s)	436
Bse1I	ACTGG	1 cut(s)	685
Bse3DI	GCAATG	4 cut(s)	186, 375, 501, 657
Bse8I	GATNNNNATC	1 cut(s)	203
BseBI	CCWGG	1 cut(s)	671
BseDI	CCNNGG	3 cut(s)	19, 252, 562
BseGI	GGATG	1 cut(s)	592
BseJI	GATNNNNATC	1 cut(s)	203
BseLI	CCNNNNNNNGG	1 cut(s)	436
BseMI	GCAATG	4 cut(s)	186, 375, 501, 657
BseMII	CTCAG	3 cut(s)	78, 255, 291
BseNI	ACTGG	1 cut(s)	685
BseXI	GCAGC	9 cut(s)	100, 121, 124, 343, 508, 530, 536, 620, 634
BseYI	CCCAGC	2 cut(s)	379, 627
Bsh1236I	CGCG	1 cut(s)	432
BshFI	GGCC	2 cut(s)	308, 464
BshNI	GGYRCC	1 cut(s)	673
BsiHKAI	GWGCWC	1 cut(s)	50
BsiSI	CCGG	1 cut(s)	51
BslFI	GGGAC	1 cut(s)	610
BslI	CCNNNNNNNGG	1 cut(s)	436
BsmAI	GTCTC	2 cut(s)	280, 461
BsmFI	GGGAC	1 cut(s)	610
BsmI	GAATGC	1 cut(s)	158
BsnI	GGCC	2 cut(s)	308, 464
Bsp1286I	GDGCHC	2 cut(s)	50, 405
Bsp143I	GATC	8 cut(s)	33, 69, 90, 198, 216, 237, 445, 664
Bsp19I	CCATGG	2 cut(s)	19, 562
BspACI	CCGC	4 cut(s)	227, 424, 430, 503
BspANI	GGCC	2 cut(s)	308, 464
BspCNI	CTCAG	3 cut(s)	79, 254, 290
BspFNI	CGCG	1 cut(s)	432
BspLI	GGNNCC	2 cut(s)	454, 675
BspMAI	CTGCAG	1 cut(s)	526
BspPI	GGATC	2 cut(s)	28, 211
BspT107I	GGYRCC	1 cut(s)	673
BsrDI	GCAATG	4 cut(s)	186, 375, 501, 657
BsrI	ACTGG	1 cut(s)	685
BssECI	CCNNGG	3 cut(s)	19, 252, 562
BssMI	GATC	8 cut(s)	33, 69, 90, 198, 216, 237, 445, 664
BssNI	GRCGYC	1 cut(s)	249
BssSI	CACGAG	1 cut(s)	43
BssT1I	CCWWGG	3 cut(s)	19, 252, 562
Bst2BI	CACGAG	1 cut(s)	43
Bst2UI	CCWGG	1 cut(s)	671
Bst4CI	ACNGT	3 cut(s)	63, 160, 176
BstACI	GRCGYC	1 cut(s)	249
BstAPI	GCANNNNNTGC	1 cut(s)	500
BstC8I	GCNNGC	6 cut(s)	84, 231, 323, 377, 529, 633
BstDEI	CTNAG	3 cut(s)	87, 241, 277
BstDSI	CCRYGG	2 cut(s)	19, 562
BstF5I	GGATG	1 cut(s)	592
BstFNI	CGCG	1 cut(s)	432
BstH2I	RGCGCY	1 cut(s)	114
BstHHI	GCGC	3 cut(s)	113, 213, 336
BstKTI	GATC	8 cut(s)	36, 72, 93, 201, 219, 240, 448, 667
BstMAI	GTCTC	2 cut(s)	280, 461
BstMBI	GATC	8 cut(s)	33, 69, 90, 198, 216, 237, 445, 664
BstMWI	GCNNNNNNNGC	7 cut(s)	322, 331, 500, 524, 545, 647, 653
BstNI	CCWGG	1 cut(s)	671
BstNSI	RCATGY	1 cut(s)	233
BstSCI	CCNGG	2 cut(s)	50, 669
BstSFI	CTRYAG	1 cut(s)	522
BstUI	CGCG	1 cut(s)	432
BstV1I	GCAGC	9 cut(s)	100, 121, 124, 343, 508, 530, 536, 620, 634
BstV2I	GAAGAC	1 cut(s)	360
BstX2I	RGATCY	3 cut(s)	33, 216, 237
BstYI	RGATCY	3 cut(s)	33, 216, 237
BsuI	GTATCC	1 cut(s)	569
BsuRI	GGCC	2 cut(s)	308, 464
BtgI	CCRYGG	2 cut(s)	19, 562
BtrI	CACGTC	1 cut(s)	358
BtsCI	GGATG	1 cut(s)	592
BtsIMutI	CAGTG	1 cut(s)	156
Cac8I	GCNNGC	6 cut(s)	84, 231, 323, 377, 529, 633
CfoI	GCGC	3 cut(s)	113, 213, 336
Cfr13I	GGNCC	1 cut(s)	462
CseI	GACGC	2 cut(s)	257, 579
Csp6I	GTAC	2 cut(s)	283, 615
CviAII	CATG	8 cut(s)	20, 76, 181, 208, 230, 457, 515, 563
CviQI	GTAC	2 cut(s)	283, 615
DdeI	CTNAG	3 cut(s)	87, 241, 277
DpnI	GATC	8 cut(s)	35, 71, 92, 200, 218, 239, 447, 666
DpnII	GATC	8 cut(s)	33, 69, 90, 198, 216, 237, 445, 664
Ecl136II	GAGCTC	1 cut(s)	48
Eco130I	CCWWGG	3 cut(s)	19, 252, 562
Eco24I	GRGCYC	2 cut(s)	50, 405
Eco47III	AGCGCT	1 cut(s)	112
Eco53kI	GAGCTC	1 cut(s)	48
EcoICRI	GAGCTC	1 cut(s)	48
EcoRII	CCWGG	1 cut(s)	669
EcoT14I	CCWWGG	3 cut(s)	19, 252, 562
EcoT38I	GRGCYC	2 cut(s)	50, 405
ErhI	CCWWGG	3 cut(s)	19, 252, 562
FaeI	CATG	8 cut(s)	23, 79, 184, 211, 233, 460, 518, 566
FaqI	GGGAC	1 cut(s)	610
FatI	CATG	8 cut(s)	19, 75, 180, 207, 229, 456, 514, 562
FauI	CCCGC	1 cut(s)	234
FbaI	TGATCA	2 cut(s)	198, 664
FokI	GGATG	1 cut(s)	599
FriOI	GRGCYC	2 cut(s)	50, 405
FspBI	CTAG	1 cut(s)	483
FspI	TGCGCA	1 cut(s)	212
GlaI	GCGC	3 cut(s)	112, 212, 335
GsaI	CCCAGC	2 cut(s)	383, 631
HaeII	RGCGCY	1 cut(s)	114
HaeIII	GGCC	2 cut(s)	308, 464
HapII	CCGG	1 cut(s)	51
HgaI	GACGC	2 cut(s)	257, 579
HhaI	GCGC	3 cut(s)	113, 213, 336
Hin1I	GRCGYC	1 cut(s)	249
Hin1II	CATG	8 cut(s)	23, 79, 184, 211, 233, 460, 518, 566
Hin6I	GCGC	3 cut(s)	111, 211, 334
HinP1I	GCGC	3 cut(s)	111, 211, 334
HinfI	GANTC	1 cut(s)	204
HpaII	CCGG	1 cut(s)	51
HphI	GGTGA	4 cut(s)	112, 551, 659, 674
Hpy188I	TCNGA	5 cut(s)	67, 203, 244, 280, 575
Hpy99I	CGWCG	1 cut(s)	251
HpyAV	CCTTC	1 cut(s)	577
HpyCH4III	ACNGT	3 cut(s)	63, 160, 176
HpyCH4IV	ACGT	1 cut(s)	357
HpyCH4V	TGCA	4 cut(s)	156, 518, 524, 650
HpyF10VI	GCNNNNNNNGC	7 cut(s)	322, 331, 500, 524, 545, 647, 653
HpyF3I	CTNAG	3 cut(s)	87, 241, 277
HpySE526I	ACGT	1 cut(s)	357
Hsp92I	GRCGYC	1 cut(s)	249
Hsp92II	CATG	8 cut(s)	23, 79, 184, 211, 233, 460, 518, 566
HspAI	GCGC	3 cut(s)	111, 211, 334
Ksp22I	TGATCA	2 cut(s)	198, 664
Kzo9I	GATC	8 cut(s)	33, 69, 90, 198, 216, 237, 445, 664
LmnI	GCTCC	3 cut(s)	53, 458, 553
Lsp1109I	GCAGC	9 cut(s)	100, 121, 124, 343, 508, 530, 536, 620, 634
LweI	GCATC	1 cut(s)	577
MaeI	CTAG	1 cut(s)	483
MaeII	ACGT	1 cut(s)	357
MalI	GATC	8 cut(s)	35, 71, 92, 200, 218, 239, 447, 666
MboI	GATC	8 cut(s)	33, 69, 90, 198, 216, 237, 445, 664
MboII	GAAGA	1 cut(s)	365
MflI	RGATCY	3 cut(s)	33, 216, 237
MhlI	GDGCHC	2 cut(s)	50, 405
MnlI	CCTC	7 cut(s)	5, 72, 298, 416, 428, 433, 453
MslI	CAYNNNNRTG	1 cut(s)	561
MspA1I	CMGCKG	2 cut(s)	521, 611
MspI	CCGG	1 cut(s)	51
MspR9I	CCNGG	2 cut(s)	52, 671
Mva1269I	GAATGC	1 cut(s)	158
MvaI	CCWGG	1 cut(s)	671
MvnI	CGCG	1 cut(s)	432
MwoI	GCNNNNNNNGC	7 cut(s)	322, 331, 500, 524, 545, 647, 653
NciI	CCSGG	1 cut(s)	52
NcoI	CCATGG	2 cut(s)	19, 562
NdeII	GATC	8 cut(s)	33, 69, 90, 198, 216, 237, 445, 664
NlaIII	CATG	8 cut(s)	23, 79, 184, 211, 233, 460, 518, 566
NlaIV	GGNNCC	2 cut(s)	454, 675
NmeAIII	GCCGAG	1 cut(s)	490
NsbI	TGCGCA	1 cut(s)	212
NspI	RCATGY	1 cut(s)	233
PaeI	GCATGC	1 cut(s)	233
PctI	GAATGC	1 cut(s)	158
PfeI	GAWTC	1 cut(s)	204
Psp124BI	GAGCTC	1 cut(s)	50
Psp6I	CCWGG	1 cut(s)	669
PspFI	CCCAGC	2 cut(s)	379, 627
PspGI	CCWGG	1 cut(s)	669
PspN4I	GGNNCC	2 cut(s)	454, 675
PspPI	GGNCC	1 cut(s)	462
PstI	CTGCAG	1 cut(s)	526
PsuI	RGATCY	3 cut(s)	33, 216, 237
PvuII	CAGCTG	2 cut(s)	521, 611
RsaI	GTAC	2 cut(s)	284, 616
RsaNI	GTAC	2 cut(s)	283, 615
RseI	CAYNNNNRTG	1 cut(s)	561
SacI	GAGCTC	1 cut(s)	50
Sau3AI	GATC	8 cut(s)	33, 69, 90, 198, 216, 237, 445, 664
Sau96I	GGNCC	1 cut(s)	462
ScrFI	CCNGG	2 cut(s)	52, 671
SduI	GDGCHC	2 cut(s)	50, 405
SetI	ASST	8 cut(s)	16, 50, 293, 360, 381, 420, 523, 613
SfaNI	GCATC	1 cut(s)	577
SfcI	CTRYAG	1 cut(s)	522
SmiMI	CAYNNNNRTG	1 cut(s)	561
SpeI	ACTAGT	1 cut(s)	482
SphI	GCATGC	1 cut(s)	233
SsiI	CCGC	4 cut(s)	227, 424, 430, 503
SspMI	CTAG	1 cut(s)	483
SstI	GAGCTC	1 cut(s)	50
StyD4I	CCNGG	2 cut(s)	50, 669
StyI	CCWWGG	3 cut(s)	19, 252, 562
TaaI	ACNGT	3 cut(s)	63, 160, 176
TaiI	ACGT	1 cut(s)	360
TaqI	TCGA	1 cut(s)	387
TatI	WGTACW	1 cut(s)	282
TauI	GCSGC	1 cut(s)	506
TfiI	GAWTC	1 cut(s)	204
TscAI	CASTG	1 cut(s)	163
TseI	GCWGC	9 cut(s)	113, 134, 137, 331, 518, 521, 524, 608, 647
TspDTI	ATGAA	5 cut(s)	165, 169, 283, 491, 545
TspRI	CASTG	1 cut(s)	163
XceI	RCATGY	1 cut(s)	233
XspI	CTAG	1 cut(s)	483

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.