Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0008922

Physical Location & Seq

Genomic Coordinates Forward (+)

41496215 .. 41496999

Gene Structure 785 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1339000.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 744 bp

ATGGGGAGACAAACTACCACCACCACCAACGTTAACAATGTTGTTAACAACAGGAACGTTAACCACTCCTCCTCCAATGCCAATACCACTAATGGCACTGCCGATGATAACGAGTGCATGGTGCGAGAGCAAGACCGTTTCATGCCGATAGCCAATGTGATAAGAATCATGCGCAAGATCCTACCCCCACATGCCAAGATCTCCGACGACGCCAAGGAAACCATCCAAGAGTGCGTCTCCGAGTACATCAGCTTCATCACCGGGGAGGCCAACGAGCGCTGCCAGCGCGAGCAGCGCAAGACCATCACTGCTGAAGACGTGCTGTGGGCCATGAGCAAGCTCGGCTTTGATGACTACATCGAGCCACTCACCCTCTACCTGCACCGCTACCGCGAGATGGAGGGCGAGCGCGGGTCCTCCACGACCTCCTTAATGAGAAGCGAGTCCTTGGCCAAGGGGGCGGGTACTAGTAGTGGTACCAGCAGCAGGGCAATTGATCACCACCGGTACTATGGCACCTCTATGGCGGCGGTTGCTGCTGCTTTTCATCATCAGCATGGTCATGGCTTTTTCGGGTACATGAACCCGTCCGATGCGTTGGTCTCCAACAATAATGTGAATGCTGCTTCTGCTGCCGCAGCATCTGGATCGTCCACCCAGCTCCAGGCTGCCACATGCAAATGGTGCAAATGGTGCAAACGGTGGAGCATGAAATGCACTGGAATGGAATCACCAGAGTGCTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0001101 GO:0003674 GO:0003700 GO:0005488 GO:0005515 GO:0006355 GO:0007154 GO:0007165 GO:0008134 GO:0008150 GO:0009719 GO:0009725 GO:0009737 GO:0009738 GO:0009755 GO:0009889 GO:0009891 GO:0009893 GO:0009987 GO:0010033 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0023052 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032870 GO:0033613 GO:0033993 GO:0042221 GO:0045893 GO:0045935 GO:0048518 GO:0048522 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051716 GO:0060255 GO:0065007 GO:0070887 GO:0071215 GO:0071229 GO:0071310 GO:0071396 GO:0071495 GO:0080090 GO:0097305 GO:0097306 GO:0140110 GO:1901700 GO:1901701 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

ko04612 ko05152 ko05166 map04612 map05152 map05166

Pfam Domains

Protein Families

CBFD_NFYB_HMF

Protein Analysis

248

Amino Acids

27.35

Weight (kDa)

7.1

Isoelectric Point (pI)

41.76

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Histone	PF00125	36 - 111	8.6e-07	Core histone H2A/H2B/H3/H4 domain
CBFD_NFYB_HMF	PF00808	47 - 111	5.3e-26	Histone-like transcription factor (CBF/NF-Y) and archaeal histone

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0008922)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G47670 AT5G47670 AT5G47670
fragaria_vesca	FvH4_3g00320 FvH4_3g00320 FvH4_3g11540
malus_domestica	MD05G1361600.v1.1 MD10G1339000.v1.1
prunus_persica	Prupe.4G003800_v2.0.a1 Prupe.4G003800_v2.0.a1
pyrus_communis	pycom05g32810 pycom10g28870
rosa_chinensis	RchiOBHm_Chr5g0000501
rosa_laevigata	RLG00000030872
rosa_multiflora	Rmu_sc0003949.1_g000009
rosa_roxburghii	Rroxscaffold_1G00075680
rosa_rugosa	Rorug04G0384300
rosa_samantha	Rh5AG004100 Rh5BG005500 Rh5CG004500 Rh5DG004400
rosa_wichuraiana	Rw5G000410

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc16I	TGCGCA	1 cut(s)	173
Acc36I	ACCTGC	1 cut(s)	387
Acc65I	GGTACC	1 cut(s)	476
AccB1I	GGYRCC	2 cut(s)	476, 515
AccII	CGCG	3 cut(s)	288, 393, 411
AciI	CCGC	7 cut(s)	385, 391, 411, 461, 527, 530, 636
AclI	AACGTT	2 cut(s)	30, 57
AclWI	GGATC	2 cut(s)	172, 655
AcoI	YGGCCR	1 cut(s)	450
AcuI	CTGAAG	1 cut(s)	333
AcyI	GRCGYC	1 cut(s)	210
AfaI	GTAC	5 cut(s)	245, 466, 478, 509, 578
AfeI	AGCGCT	1 cut(s)	278
AfiI	CCNNNNNNNGG	3 cut(s)	397, 486, 664
AgeI	ACCGGT	1 cut(s)	504
AhlI	ACTAGT	1 cut(s)	467
AjiI	CACGTC	1 cut(s)	319
AjnI	CCWGG	1 cut(s)	663
AleI	CACNNNNGTG	1 cut(s)	736
AluBI	AGCT	3 cut(s)	252, 340, 661
AluI	AGCT	3 cut(s)	252, 340, 661
Alw26I	GTCTC	2 cut(s)	241, 607
AlwI	GGATC	2 cut(s)	172, 655
AlwNI	CAGNNNCTG	1 cut(s)	644
Aor51HI	AGCGCT	1 cut(s)	278
AoxI	GGCC	3 cut(s)	267, 327, 450
ApeKI	GCWGC	9 cut(s)	279, 292, 483, 536, 539, 623, 632, 638, 668
AsiGI	ACCGGT	1 cut(s)	504
Asp718I	GGTACC	1 cut(s)	476
AspLEI	GCGC	5 cut(s)	174, 279, 288, 297, 411
AspS9I	GGNCC	2 cut(s)	327, 414
AsuC2I	CCSGG	1 cut(s)	262
AsuHPI	GGTGA	4 cut(s)	250, 361, 491, 723
AvaII	GGWCC	1 cut(s)	414
BalI	TGGCCA	1 cut(s)	452
BanI	GGYRCC	2 cut(s)	476, 515
BarI	GAAGNNNNNNTAC	2 cut(s)	236, 268
BbsI	GAAGAC	1 cut(s)	321
BbvI	GCAGC	9 cut(s)	266, 304, 495, 523, 526, 610, 619, 650, 655
BccI	CCATC	3 cut(s)	230, 311, 391
BcgI	CGANNNNNNTGC	2 cut(s)	630, 664
BciT130I	CCWGG	1 cut(s)	665
BclI	TGATCA	1 cut(s)	496
BcnI	CCSGG	1 cut(s)	262
BcoDI	GTCTC	2 cut(s)	241, 607
BcuI	ACTAGT	1 cut(s)	467
BfaI	CTAG	1 cut(s)	468
BfoI	RGCGCY	1 cut(s)	280
BfuAI	ACCTGC	1 cut(s)	387
BglI	GCCNNNNNGGC	1 cut(s)	458
BglII	AGATCT	1 cut(s)	198
Bme1390I	CCNGG	2 cut(s)	262, 665
Bme18I	GGWCC	1 cut(s)	414
BmgBI	CACGTC	1 cut(s)	319
BmgT120I	GGNCC	2 cut(s)	327, 414
BmiI	GGNNCC	3 cut(s)	415, 478, 517
BmrFI	CCNGG	2 cut(s)	262, 665
BmsI	GCATC	2 cut(s)	583, 650
BpiI	GAAGAC	1 cut(s)	321
BplI	GAGNNNNNCTC	2 cut(s)	221, 253
BpmI	CTGGAG	1 cut(s)	647
BpuMI	CCSGG	1 cut(s)	262
BsaBI	GATNNNNATC	1 cut(s)	164
BsaHI	GRCGYC	1 cut(s)	210
BsaI	GGTCTC	1 cut(s)	607
BsaJI	CCNNGG	4 cut(s)	213, 261, 447, 453
BsaWI	WCCGGW	1 cut(s)	504
BsaXI	ACNNNNNCTCC	4 cut(s)	53, 56, 83, 86
Bsc4I	CCNNNNNNNGG	3 cut(s)	397, 486, 664
Bse118I	RCCGGY	1 cut(s)	504
Bse1I	ACTGG	1 cut(s)	724
Bse8I	GATNNNNATC	1 cut(s)	164
BseBI	CCWGG	1 cut(s)	665
BseDI	CCNNGG	4 cut(s)	213, 261, 447, 453
BseGI	GGATG	1 cut(s)	222
BseJI	GATNNNNATC	1 cut(s)	164
BseLI	CCNNNNNNNGG	3 cut(s)	397, 486, 664
BseNI	ACTGG	1 cut(s)	724
BseRI	GAGGAG	2 cut(s)	58, 61
BseXI	GCAGC	9 cut(s)	266, 304, 495, 523, 526, 610, 619, 650, 655
BseYI	CCCAGC	1 cut(s)	657
BsgI	GTGCAG	1 cut(s)	365
Bsh1236I	CGCG	3 cut(s)	288, 393, 411
BshFI	GGCC	3 cut(s)	269, 329, 452
BshNI	GGYRCC	2 cut(s)	476, 515
BshTI	ACCGGT	1 cut(s)	504
BsiSI	CCGG	2 cut(s)	261, 505
BslI	CCNNNNNNNGG	3 cut(s)	397, 486, 664
BsmAI	GTCTC	2 cut(s)	241, 607
BsmBI	CGTCTC	1 cut(s)	241
BsmI	GAATGC	1 cut(s)	625
BsnI	GGCC	3 cut(s)	269, 329, 452
Bso31I	GGTCTC	1 cut(s)	607
Bsp143I	GATC	4 cut(s)	177, 198, 496, 647
BspACI	CCGC	7 cut(s)	385, 391, 411, 461, 527, 530, 636
BspANI	GGCC	3 cut(s)	269, 329, 452
BspFNI	CGCG	3 cut(s)	288, 393, 411
BspLI	GGNNCC	3 cut(s)	415, 478, 517
BspMI	ACCTGC	1 cut(s)	387
BspPI	GGATC	2 cut(s)	172, 655
BspT107I	GGYRCC	2 cut(s)	476, 515
BspTNI	GGTCTC	1 cut(s)	607
BsrFI	RCCGGY	1 cut(s)	504
BsrI	ACTGG	1 cut(s)	724
BssAI	RCCGGY	1 cut(s)	504
BssECI	CCNNGG	4 cut(s)	213, 261, 447, 453
BssMI	GATC	4 cut(s)	177, 198, 496, 647
BssNI	GRCGYC	1 cut(s)	210
BssT1I	CCWWGG	3 cut(s)	213, 447, 453
Bst2UI	CCWGG	1 cut(s)	665
Bst4CI	ACNGT	2 cut(s)	137, 702
BstACI	GRCGYC	1 cut(s)	210
BstAPI	GCANNNNNTGC	3 cut(s)	684, 693, 714
BstC8I	GCNNGC	4 cut(s)	284, 290, 338, 407
BstF5I	GGATG	1 cut(s)	222
BstFNI	CGCG	3 cut(s)	288, 393, 411
BstH2I	RGCGCY	1 cut(s)	280
BstHHI	GCGC	5 cut(s)	174, 279, 288, 297, 411
BstKTI	GATC	4 cut(s)	180, 201, 499, 650
BstMAI	GTCTC	2 cut(s)	241, 607
BstMBI	GATC	4 cut(s)	177, 198, 496, 647
BstNI	CCWGG	1 cut(s)	665
BstNSI	RCATGY	2 cut(s)	194, 678
BstSCI	CCNGG	2 cut(s)	260, 663
BstUI	CGCG	3 cut(s)	288, 393, 411
BstV1I	GCAGC	9 cut(s)	266, 304, 495, 523, 526, 610, 619, 650, 655
BstV2I	GAAGAC	1 cut(s)	321
BstX2I	RGATCY	2 cut(s)	177, 198
BstYI	RGATCY	2 cut(s)	177, 198
BsuRI	GGCC	3 cut(s)	269, 329, 452
BtrI	CACGTC	1 cut(s)	319
BtsCI	GGATG	1 cut(s)	222
BtsI	GCAGTG	2 cut(s)	96, 306
BtsIMutI	CAGTG	3 cut(s)	96, 306, 717
BveI	ACCTGC	1 cut(s)	387
Cac8I	GCNNGC	4 cut(s)	284, 290, 338, 407
CaiI	CAGNNNCTG	1 cut(s)	644
CfoI	GCGC	5 cut(s)	174, 279, 288, 297, 411
Cfr10I	RCCGGY	1 cut(s)	504
Cfr13I	GGNCC	2 cut(s)	327, 414
CseI	GACGC	2 cut(s)	218, 223
Csp6I	GTAC	5 cut(s)	244, 465, 477, 508, 577
CspAI	ACCGGT	1 cut(s)	504
CviQI	GTAC	5 cut(s)	244, 465, 477, 508, 577
DpnI	GATC	4 cut(s)	179, 200, 498, 649
DpnII	GATC	4 cut(s)	177, 198, 496, 647
EaeI	YGGCCR	1 cut(s)	450
Eco130I	CCWWGG	3 cut(s)	213, 447, 453
Eco31I	GGTCTC	1 cut(s)	607
Eco47I	GGWCC	1 cut(s)	414
Eco47III	AGCGCT	1 cut(s)	278
Eco57I	CTGAAG	1 cut(s)	333
EcoO109I	RGGNCCY	1 cut(s)	414
EcoRII	CCWGG	1 cut(s)	663
EcoT14I	CCWWGG	3 cut(s)	213, 447, 453
ErhI	CCWWGG	3 cut(s)	213, 447, 453
Esp3I	CGTCTC	1 cut(s)	241
FalI	AAGNNNNNCTT	2 cut(s)	329, 361
FauI	CCCGC	2 cut(s)	404, 454
FbaI	TGATCA	1 cut(s)	496
FokI	GGATG	1 cut(s)	209
FspBI	CTAG	1 cut(s)	468
FspI	TGCGCA	1 cut(s)	173
GlaI	GCGC	5 cut(s)	173, 278, 287, 296, 410
GsaI	CCCAGC	1 cut(s)	661
GsuI	CTGGAG	1 cut(s)	647
HaeII	RGCGCY	1 cut(s)	280
HaeIII	GGCC	3 cut(s)	269, 329, 452
HapII	CCGG	2 cut(s)	261, 505
HgaI	GACGC	2 cut(s)	218, 223
HhaI	GCGC	5 cut(s)	174, 279, 288, 297, 411
Hin1I	GRCGYC	1 cut(s)	210
Hin6I	GCGC	5 cut(s)	172, 277, 286, 295, 409
HinP1I	GCGC	5 cut(s)	172, 277, 286, 295, 409
HincII	GTYRAC	3 cut(s)	34, 46, 61
HindII	GTYRAC	3 cut(s)	34, 46, 61
HinfI	GANTC	3 cut(s)	165, 443, 728
HpaI	GTTAAC	3 cut(s)	34, 46, 61
HpaII	CCGG	2 cut(s)	261, 505
HphI	GGTGA	4 cut(s)	250, 361, 491, 723
Hpy166II	GTNNAC	4 cut(s)	34, 46, 61, 654
Hpy188I	TCNGA	3 cut(s)	205, 241, 592
Hpy188III	TCNNGA	1 cut(s)	645
Hpy8I	GTNNAC	4 cut(s)	34, 46, 61, 654
Hpy99I	CGWCG	2 cut(s)	209, 212
HpyCH4III	ACNGT	2 cut(s)	137, 702
HpyCH4IV	ACGT	3 cut(s)	30, 57, 318
HpyCH4V	TGCA	6 cut(s)	117, 382, 678, 687, 696, 717
HpySE526I	ACGT	3 cut(s)	30, 57, 318
Hsp92I	GRCGYC	1 cut(s)	210
HspAI	GCGC	5 cut(s)	172, 277, 286, 295, 409
KpnI	GGTACC	1 cut(s)	480
Ksp22I	TGATCA	1 cut(s)	496
KspAI	GTTAAC	3 cut(s)	34, 46, 61
Kzo9I	GATC	4 cut(s)	177, 198, 496, 647
LmnI	GCTCC	2 cut(s)	666, 705
Lsp1109I	GCAGC	9 cut(s)	266, 304, 495, 523, 526, 610, 619, 650, 655
LweI	GCATC	2 cut(s)	583, 650
MaeI	CTAG	1 cut(s)	468
MaeII	ACGT	3 cut(s)	30, 57, 318
MalI	GATC	4 cut(s)	179, 200, 498, 649
MboI	GATC	4 cut(s)	177, 198, 496, 647
MboII	GAAGA	1 cut(s)	326
MfeI	CAATTG	1 cut(s)	492
MflI	RGATCY	2 cut(s)	177, 198
MlsI	TGGCCA	1 cut(s)	452
MluCI	AATT	1 cut(s)	492
MluNI	TGGCCA	1 cut(s)	452
MlyI	GAGTC	1 cut(s)	452
MmeI	TCCRAC	2 cut(s)	228, 630
MnlI	CCTC	8 cut(s)	79, 82, 259, 383, 394, 427, 436, 529
Mox20I	TGGCCA	1 cut(s)	452
MscI	TGGCCA	1 cut(s)	452
MseI	TTAA	4 cut(s)	33, 45, 60, 431
MslI	CAYNNNNRTG	6 cut(s)	521, 555, 561, 679, 722, 736
Msp20I	TGGCCA	1 cut(s)	452
MspI	CCGG	2 cut(s)	261, 505
MspR9I	CCNGG	2 cut(s)	262, 665
MunI	CAATTG	1 cut(s)	492
Mva1269I	GAATGC	1 cut(s)	625
MvaI	CCWGG	1 cut(s)	665
MvnI	CGCG	3 cut(s)	288, 393, 411
NciI	CCSGG	1 cut(s)	262
NdeII	GATC	4 cut(s)	177, 198, 496, 647
NlaIV	GGNNCC	3 cut(s)	415, 478, 517
NmeAIII	GCCGAG	1 cut(s)	321
NsbI	TGCGCA	1 cut(s)	173
NspI	RCATGY	2 cut(s)	194, 678
OliI	CACNNNNGTG	1 cut(s)	736
PctI	GAATGC	1 cut(s)	625
PfeI	GAWTC	2 cut(s)	165, 728
PinAI	ACCGGT	1 cut(s)	504
PleI	GAGTC	1 cut(s)	451
PpsI	GAGTC	1 cut(s)	451
PpuMI	RGGWCCY	1 cut(s)	414
Psp1406I	AACGTT	2 cut(s)	30, 57
Psp5II	RGGWCCY	1 cut(s)	414
Psp6I	CCWGG	1 cut(s)	663
PspFI	CCCAGC	1 cut(s)	657
PspGI	CCWGG	1 cut(s)	663
PspN4I	GGNNCC	3 cut(s)	415, 478, 517
PspPI	GGNCC	2 cut(s)	327, 414
PspPPI	RGGWCCY	1 cut(s)	414
PstNI	CAGNNNCTG	1 cut(s)	644
PsuI	RGATCY	2 cut(s)	177, 198
RsaI	GTAC	5 cut(s)	245, 466, 478, 509, 578
RsaNI	GTAC	5 cut(s)	244, 465, 477, 508, 577
RseI	CAYNNNNRTG	6 cut(s)	521, 555, 561, 679, 722, 736
SaqAI	TTAA	4 cut(s)	33, 45, 60, 431
Sau3AI	GATC	4 cut(s)	177, 198, 496, 647
Sau96I	GGNCC	2 cut(s)	327, 414
SchI	GAGTC	1 cut(s)	452
ScrFI	CCNGG	2 cut(s)	262, 665
SetI	ASST	9 cut(s)	33, 60, 254, 321, 342, 381, 428, 521, 663
SfaNI	GCATC	2 cut(s)	583, 650
SinI	GGWCC	1 cut(s)	414
SmiMI	CAYNNNNRTG	6 cut(s)	521, 555, 561, 679, 722, 736
SpeI	ACTAGT	1 cut(s)	467
Sse9I	AATT	1 cut(s)	492
SsiI	CCGC	7 cut(s)	385, 391, 411, 461, 527, 530, 636
SspMI	CTAG	1 cut(s)	468
StyD4I	CCNGG	2 cut(s)	260, 663
StyI	CCWWGG	3 cut(s)	213, 447, 453
TaaI	ACNGT	2 cut(s)	137, 702
TaiI	ACGT	3 cut(s)	33, 60, 321
TaqI	TCGA	1 cut(s)	360
TasI	AATT	1 cut(s)	492
TatI	WGTACW	1 cut(s)	243
TauI	GCSGC	2 cut(s)	530, 638
TfiI	GAWTC	2 cut(s)	165, 728
Tru1I	TTAA	4 cut(s)	33, 45, 60, 431
Tru9I	TTAA	4 cut(s)	33, 45, 60, 431
TscAI	CASTG	3 cut(s)	103, 313, 724
TseI	GCWGC	9 cut(s)	279, 292, 483, 536, 539, 623, 632, 638, 668
TspDTI	ATGAA	5 cut(s)	130, 244, 536, 596, 725
TspRI	CASTG	3 cut(s)	103, 313, 724
VpaK11BI	GGWCC	1 cut(s)	414
XceI	RCATGY	2 cut(s)	194, 678
XcmI	CCANNNNNNNNNTGG	1 cut(s)	509
XspI	CTAG	1 cut(s)	468

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.