AT5G47740

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0012091
Physical Location & Seq
Forward (+)
19338511 .. 19339775
1265 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47740.2

Sequence Viewer

Length: 735 bp
ATGCAACGGAGGAGCAATGAGATAGAGGAGGAGGAGGAACAAGAAGATGGAAGGAGAAGACTGGAGAGCGTGAGAGAGAGCCAGTTGGAAGGGAGAAGCAGCGGAACAGTGTCCATGAACGGAGAGGACAACGTCTATGTTGGGGTTGGGAAAGGAGACTCAAGTATGGAGGCATTGCGTTGGGCTATTGACAACCTAATGACTTCTTCTTCTACTCTTCTTTTCCTCATCCATGTCTTCCCTGAGACTCGCTTCATTCCTTACCCCTTGGGGAGGATAACGAGGGAGAGAGCAAGTCAAGAACAAGTAGAAAGCTTTATGTCTCAGGAAAGGGAAAAGAGAAGAACTCTGTTGCTCAAGTTCCTTCATGCCTGCTCTGCTTCTAAGGTGAAGGTGGAGACAATACTGGTTGAGAGTGACTCGGTCGCTAAGGCTGTACAAGACCTCATTACCATTCTTAACATTAGGAAGCTTGTTCTTGGGATCGACAAGTCTAATGCTAGGAAAGCATCCACAATGAAAGGAAACAGTGTCCCTGAACTGATAATGAGGAGCTCCGCAGCAGACGTGTGTGAGGTTAAAGTCATATGCCAAGGGAAAGAGATAAATATGGAGCAGACGATGATGGAGAGCAGCCCAGCTAAGTCCCCAATAGTGCAGCGGCAAAAGAAAGATCAACCTGTTGACCCTTTTGCTTGCATTTGCTTTATCAGTAAGCCCAAAACTAACAGATAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

244

Amino Acids

27.53

Weight (kDa)

8.24

Isoelectric Point (pI)

66.89

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 44 - 192 7.3e-06 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47740 AT5G47740
fragaria_vesca FvH4_3g00270 FvH4_3g00270 FvH4_3g00270
malus_domestica MD05G1362400.v1.1
prunus_persica Prupe.4G003000_v2.0.a1
pyrus_communis pycom05g32880
rosa_chinensis RchiOBHm_Chr5g0000401
rosa_laevigata RLG00000030863
rosa_multiflora Rmu_sc0017532.1_g000001 Rmu_ssc0000181.1_g000001
rosa_roxburghii Rroxscaffold_1G00075760
rosa_rugosa Rorug04G0383300
rosa_samantha Rh5AG003100 Rh5BG004300 Rh5CG003300 Rh5DG003300
rosa_wichuraiana Rw5G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 3 cut(s) 102, 558, 661
AclWI GGATC 1 cut(s) 491
AfaI GTAC 1 cut(s) 438
AfiI CCNNNNNNNGG 1 cut(s) 273
AflIII ACRYGT 1 cut(s) 567
AjiI CACGTC 1 cut(s) 568
AluBI AGCT 4 cut(s) 315, 472, 555, 641
AluI AGCT 4 cut(s) 315, 472, 555, 641
Alw21I GWGCWC 1 cut(s) 557
Alw26I GTCTC 4 cut(s) 150, 239, 327, 392
AlwI GGATC 1 cut(s) 491
ApeKI GCWGC 4 cut(s) 99, 560, 633, 658
AsuHPI GGTGA 1 cut(s) 400
BanII GRGCYC 1 cut(s) 557
BbsI GAAGAC 2 cut(s) 64, 229
Bbv12I GWGCWC 1 cut(s) 557
BbvI GCAGC 4 cut(s) 111, 572, 645, 670
BccI CCATC 2 cut(s) 41, 619
BcoDI GTCTC 4 cut(s) 150, 239, 327, 392
BfaI CTAG 1 cut(s) 501
BisI GCNGC 5 cut(s) 100, 561, 634, 659, 662
BlsI GCNGC 5 cut(s) 101, 562, 635, 660, 663
BmgBI CACGTC 1 cut(s) 568
BmsI GCATC 1 cut(s) 518
BpiI GAAGAC 2 cut(s) 64, 229
BplI GAGNNNNNCTC 4 cut(s) 331, 363, 404, 436
BpmI CTGGAG 1 cut(s) 83
Bpu10I CCTNAGC 1 cut(s) 429
BpuEI CTTGAG 2 cut(s) 145, 341
BsaJI CCNNGG 2 cut(s) 267, 592
Bsc4I CCNNNNNNNGG 1 cut(s) 273
Bse1I ACTGG 3 cut(s) 66, 82, 411
Bse3DI GCAATG 2 cut(s) 22, 173
BseDI CCNNGG 2 cut(s) 267, 592
BseGI GGATG 2 cut(s) 228, 509
BseLI CCNNNNNNNGG 1 cut(s) 273
BseMI GCAATG 2 cut(s) 22, 173
BseMII CTCAG 2 cut(s) 234, 338
BseNI ACTGG 3 cut(s) 66, 82, 411
BseRI GAGGAG 5 cut(s) 25, 41, 44, 47, 565
BseXI GCAGC 4 cut(s) 111, 572, 645, 670
BseYI CCCAGC 1 cut(s) 637
BsgI GTGCAG 1 cut(s) 677
Bsh1285I CGRYCG 1 cut(s) 426
BsiEI CGRYCG 1 cut(s) 426
BsiHKAI GWGCWC 1 cut(s) 557
BslFI GGGAC 2 cut(s) 518, 631
BslI CCNNNNNNNGG 1 cut(s) 273
BsmAI GTCTC 4 cut(s) 150, 239, 327, 392
BsmFI GGGAC 2 cut(s) 518, 631
Bsp1286I GDGCHC 1 cut(s) 557
Bsp1407I TGTACA 1 cut(s) 436
Bsp143I GATC 2 cut(s) 483, 673
BspACI CCGC 3 cut(s) 102, 558, 661
BspCNI CTCAG 2 cut(s) 235, 337
BspPI GGATC 1 cut(s) 491
BsrDI GCAATG 2 cut(s) 22, 173
BsrGI TGTACA 1 cut(s) 436
BsrI ACTGG 3 cut(s) 66, 82, 411
BssECI CCNNGG 2 cut(s) 267, 592
BssMI GATC 2 cut(s) 483, 673
BssT1I CCWWGG 2 cut(s) 267, 592
Bst4CI ACNGT 2 cut(s) 109, 530
Bst6I CTCTTC 1 cut(s) 222
BstAUI TGTACA 1 cut(s) 436
BstC8I GCNNGC 2 cut(s) 373, 697
BstDEI CTNAG 5 cut(s) 243, 324, 384, 429, 642
BstENI CCTNNNNNAGG 1 cut(s) 271
BstF5I GGATG 2 cut(s) 228, 509
BstKTI GATC 2 cut(s) 486, 676
BstMAI GTCTC 4 cut(s) 150, 239, 327, 392
BstMBI GATC 2 cut(s) 483, 673
BstMCI CGRYCG 1 cut(s) 426
BstMWI GCNNNNNNNGC 2 cut(s) 377, 506
BstV1I GCAGC 4 cut(s) 111, 572, 645, 670
BstV2I GAAGAC 2 cut(s) 64, 229
BtrI CACGTC 1 cut(s) 568
BtsCI GGATG 2 cut(s) 228, 509
BtsIMutI CAGTG 2 cut(s) 114, 535
Cac8I GCNNGC 2 cut(s) 373, 697
Csp6I GTAC 1 cut(s) 437
CviAII CATG 3 cut(s) 115, 233, 368
CviJI RGCY 9 cut(s) 81, 185, 315, 434, 472, 555, 636, 641, 718
CviKI_1 RGCY 9 cut(s) 81, 185, 315, 434, 472, 555, 636, 641, 718
CviQI GTAC 1 cut(s) 437
DdeI CTNAG 5 cut(s) 243, 324, 384, 429, 642
DpnI GATC 2 cut(s) 485, 675
DpnII GATC 2 cut(s) 483, 673
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Ecl136II GAGCTC 1 cut(s) 555
Eco130I CCWWGG 2 cut(s) 267, 592
Eco24I GRGCYC 1 cut(s) 557
Eco53kI GAGCTC 1 cut(s) 555
EcoICRI GAGCTC 1 cut(s) 555
EcoNI CCTNNNNNAGG 1 cut(s) 271
EcoT14I CCWWGG 2 cut(s) 267, 592
EcoT38I GRGCYC 1 cut(s) 557
ErhI CCWWGG 2 cut(s) 267, 592
FaeI CATG 3 cut(s) 118, 236, 371
FaiI YATR 9 cut(s) 116, 138, 167, 234, 320, 369, 587, 589, 611
FaqI GGGAC 2 cut(s) 518, 631
FatI CATG 3 cut(s) 114, 232, 367
FauNDI CATATG 1 cut(s) 587
Fnu4HI GCNGC 5 cut(s) 100, 561, 634, 659, 662
FokI GGATG 2 cut(s) 215, 496
FriOI GRGCYC 1 cut(s) 557
Fsp4HI GCNGC 5 cut(s) 100, 561, 634, 659, 662
FspBI CTAG 1 cut(s) 501
GluI GCNGC 5 cut(s) 100, 561, 634, 659, 662
GsaI CCCAGC 1 cut(s) 641
GsuI CTGGAG 1 cut(s) 83
Hin1II CATG 3 cut(s) 118, 236, 371
HincII GTYRAC 1 cut(s) 685
HindII GTYRAC 1 cut(s) 685
HindIII AAGCTT 2 cut(s) 313, 470
HinfI GANTC 3 cut(s) 158, 247, 419
HphI GGTGA 1 cut(s) 400
Hpy166II GTNNAC 1 cut(s) 685
Hpy188III TCNNGA 2 cut(s) 299, 326
Hpy8I GTNNAC 1 cut(s) 685
HpyAV CCTTC 4 cut(s) 45, 83, 374, 385
HpyCH4III ACNGT 2 cut(s) 109, 530
HpyCH4IV ACGT 2 cut(s) 132, 567
HpyCH4V TGCA 3 cut(s) 4, 658, 699
HpyF10VI GCNNNNNNNGC 2 cut(s) 377, 506
HpyF3I CTNAG 5 cut(s) 243, 324, 384, 429, 642
HpySE526I ACGT 2 cut(s) 132, 567
Hsp92II CATG 3 cut(s) 118, 236, 371
Kzo9I GATC 2 cut(s) 483, 673
LmnI GCTCC 4 cut(s) 12, 552, 560, 613
LpnPI CCDG 9 cut(s) 47, 95, 255, 311, 385, 392, 549, 651, 693
Lsp1109I GCAGC 4 cut(s) 111, 572, 645, 670
LweI GCATC 1 cut(s) 518
MaeI CTAG 1 cut(s) 501
MaeII ACGT 2 cut(s) 132, 567
MaeIII GTNAC 1 cut(s) 416
MalI GATC 2 cut(s) 485, 675
MboI GATC 2 cut(s) 483, 673
MboII GAAGA 7 cut(s) 56, 69, 198, 201, 209, 229, 354
MhlI GDGCHC 1 cut(s) 557
MlyI GAGTC 3 cut(s) 152, 241, 413
MmeI TCCRAC 1 cut(s) 66
MseI TTAA 2 cut(s) 459, 579
MspA1I CMGCKG 2 cut(s) 102, 661
MwoI GCNNNNNNNGC 2 cut(s) 377, 506
NdeI CATATG 1 cut(s) 587
NdeII GATC 2 cut(s) 483, 673
NlaIII CATG 3 cut(s) 118, 236, 371
NmuCI GTSAC 1 cut(s) 416
PflFI GACNNNGTC 2 cut(s) 131, 422
PkrI GCNGC 5 cut(s) 101, 562, 635, 660, 663
PleI GAGTC 3 cut(s) 152, 241, 413
PpsI GAGTC 3 cut(s) 152, 241, 413
Psp124BI GAGCTC 1 cut(s) 557
PspFI CCCAGC 1 cut(s) 637
PsyI GACNNNGTC 2 cut(s) 131, 422
RsaI GTAC 1 cut(s) 438
RsaNI GTAC 1 cut(s) 437
SacI GAGCTC 1 cut(s) 557
SaqAI TTAA 2 cut(s) 459, 579
SatI GCNGC 5 cut(s) 100, 561, 634, 659, 662
Sau3AI GATC 2 cut(s) 483, 673
SchI GAGTC 3 cut(s) 152, 241, 413
SduI GDGCHC 1 cut(s) 557
SfaNI GCATC 1 cut(s) 518
SmlI CTYRAG 2 cut(s) 160, 356
SmoI CTYRAG 2 cut(s) 160, 356
SsiI CCGC 3 cut(s) 102, 558, 661
SspMI CTAG 1 cut(s) 501
SstI GAGCTC 1 cut(s) 557
StyI CCWWGG 2 cut(s) 267, 592
TaaI ACNGT 2 cut(s) 109, 530
TaiI ACGT 2 cut(s) 135, 570
TaqI TCGA 1 cut(s) 486
TaqII GACCGA 1 cut(s) 412
TatI WGTACW 1 cut(s) 436
TauI GCSGC 1 cut(s) 664
Tru1I TTAA 2 cut(s) 459, 579
Tru9I TTAA 2 cut(s) 459, 579
TscAI CASTG 2 cut(s) 114, 535
TseFI GTSAC 1 cut(s) 416
TseI GCWGC 4 cut(s) 99, 560, 633, 658
Tsp45I GTSAC 1 cut(s) 416
TspDTI ATGAA 4 cut(s) 131, 244, 356, 533
TspGWI ACGGA 2 cut(s) 22, 135
TspRI CASTG 2 cut(s) 114, 535
Tth111I GACNNNGTC 2 cut(s) 131, 422
XagI CCTNNNNNAGG 1 cut(s) 271
XspI CTAG 1 cut(s) 501
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.