Rh5DG003300

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5D
OG0012091
Physical Location & Seq
Reverse (-)
245014 .. 246779
1766 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5DG003300.1

Sequence Viewer

Length: 1071 bp
ATGTCAGTGTGGTTGACGACGAAGGAGACCGGGGCGGCCTTGCCCTTGCCCTTGCACTCAGAAATAGATCATGATGAAATTTATCGGACGAGGAGCACTACTGGCCATGAAGGAAGTGAATACCGCCAGCCGCAGCAACAGTACCACCGTGATGAAGATGAGTACCAGCTGCAAGGCCAGTTTCAGCACGAGTGCAATATCTCAAGGAATAGTGTATGGGAGATAGAAGAGGAAGAAGAAGAAGATGATGATCATGAGGGTTTGAATTATTCAATTGGAGGATCAAATACTCGTATCCCAATTGAGATCAAAGAGCTTTTCGGGGCGAAGCGCTACTTTCCCATGCCTTCCATCAAGGAAGAACAATATGATCATATTAATGGTCTGCCTCATTCTTCTTCATCGTCTGACATTGTTGACTGCGTTTATGTGGCCGTCGGAAAGAGCGAGTCAAGCATGGACGCCTTAAACTACGCCGTCAAGCAGCTGCTGCTGTCATCCAACACTATCCTCTATCTCATACACATTTTCCCAGAGATCAAGTACATCCCAAGTCCATTAGGAAAACTTCCAAAAAGTCAAGTGAGCCCAGAACAAGTGGAAAGTTTCATGGCCCAAGAATCAGACAAGAGAAGACAGCTCCTTCAGAAGTATATTGATAAATGCTCGGCTGCAAAGGTTAAGATGGATACTCTGCTGATTGAAAGTGATATGATCGCCAAGGCAATTGTGGACCTTATCCCTATTCTCAACATCAGAAAACTGGTGCTTGGAACGAACAAATCTAATTTGAGGAAATTGATGTCCGGGAAGGGAGCAAGGGGAATAGCTGATCAAGTCCTTCAAAGTGCACCCCAAGGTTGTGAGATTAATATCATTTGTGAAGGAAATCAAGTGATGATTAATGACTCGCTTTCCCCACGTGGCATTGCCAATGATCGCATTGCACCAAATACACTTTCCCCTAGAGGAGGAGGAGGCAATGATGATAACCCTAACTCTATCCTAGACCGCGATCAGAGGAATGAAGCCTGTTCATTCCTGTGTTTTAAACCCATGTTCTCCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

356

Amino Acids

40.0

Weight (kDa)

5.11

Isoelectric Point (pI)

63.98

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47740 AT5G47740
fragaria_vesca FvH4_3g00270 FvH4_3g00270 FvH4_3g00270
malus_domestica MD05G1362400.v1.1
prunus_persica Prupe.4G003000_v2.0.a1
pyrus_communis pycom05g32880
rosa_chinensis RchiOBHm_Chr5g0000401
rosa_laevigata RLG00000030863
rosa_multiflora Rmu_sc0017532.1_g000001 Rmu_ssc0000181.1_g000001
rosa_roxburghii Rroxscaffold_1G00075760
rosa_rugosa Rorug04G0383300
rosa_samantha Rh5AG003100 Rh5BG004300 Rh5CG003300 Rh5DG003300
rosa_wichuraiana Rw5G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1014
AciI CCGC 4 cut(s) 35, 124, 131, 1012
AclWI GGATC 1 cut(s) 289
AcoI YGGCCR 2 cut(s) 103, 432
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 629
AcvI CACGTG 1 cut(s) 923
AcyI GRCGYC 1 cut(s) 462
AfaI GTAC 3 cut(s) 143, 164, 545
AfeI AGCGCT 1 cut(s) 332
AfiI CCNNNNNNNGG 1 cut(s) 971
AgsI TTSAA 4 cut(s) 265, 273, 704, 845
AjuI GAANNNNNNNTTGG 2 cut(s) 943, 975
AluBI AGCT 5 cut(s) 169, 316, 487, 640, 830
AluI AGCT 5 cut(s) 169, 316, 487, 640, 830
Alw21I GWGCWC 2 cut(s) 98, 853
Alw26I GTCTC 1 cut(s) 20
Alw44I GTGCAC 1 cut(s) 849
AlwI GGATC 1 cut(s) 289
AlwNI CAGNNNCTG 1 cut(s) 490
Aor51HI AGCGCT 1 cut(s) 332
AoxI GGCC 5 cut(s) 36, 103, 175, 432, 612
ApaLI GTGCAC 1 cut(s) 849
ApeKI GCWGC 6 cut(s) 133, 169, 484, 487, 490, 671
ApoI RAATTY 1 cut(s) 78
AseI ATTAAT 3 cut(s) 378, 870, 903
AspLEI GCGC 1 cut(s) 333
AspS9I GGNCC 2 cut(s) 613, 733
AsuC2I CCSGG 2 cut(s) 31, 808
AvaII GGWCC 1 cut(s) 733
BaeGI GKGCMC 1 cut(s) 853
BalI TGGCCA 1 cut(s) 105
BanII GRGCYC 1 cut(s) 590
BauI CACGAG 1 cut(s) 188
BbrPI CACGTG 1 cut(s) 923
BbsI GAAGAC 1 cut(s) 640
Bbv12I GWGCWC 2 cut(s) 98, 853
BbvI GCAGC 6 cut(s) 145, 156, 474, 477, 496, 658
BccI CCATC 2 cut(s) 359, 679
BceAI ACGGC 2 cut(s) 419, 461
BciVI GTATCC 2 cut(s) 305, 682
BclI TGATCA 3 cut(s) 250, 370, 832
BcnI CCSGG 2 cut(s) 31, 808
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 2 cut(s) 966, 1007
BfoI RGCGCY 1 cut(s) 334
BfuI GTATCC 2 cut(s) 305, 682
BisI GCNGC 8 cut(s) 36, 131, 134, 170, 485, 488, 491, 672
BlsI GCNGC 8 cut(s) 37, 132, 135, 171, 486, 489, 492, 673
Bme1390I CCNGG 2 cut(s) 31, 808
Bme18I GGWCC 1 cut(s) 733
BmgT120I GGNCC 2 cut(s) 613, 733
BmrFI CCNGG 2 cut(s) 31, 808
BpiI GAAGAC 1 cut(s) 640
BpuEI CTTGAG 1 cut(s) 187
BpuMI CCSGG 2 cut(s) 31, 808
BsaAI YACGTR 1 cut(s) 923
BsaBI GATNNNNATC 2 cut(s) 249, 872
BsaHI GRCGYC 1 cut(s) 462
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 30, 720, 856
Bsc4I CCNNNNNNNGG 1 cut(s) 971
Bse1I ACTGG 3 cut(s) 106, 178, 768
Bse3DI GCAATG 3 cut(s) 927, 942, 988
Bse8I GATNNNNATC 2 cut(s) 249, 872
BseDI CCNNGG 3 cut(s) 30, 720, 856
BseGI GGATG 2 cut(s) 497, 546
BseJI GATNNNNATC 2 cut(s) 249, 872
BseLI CCNNNNNNNGG 1 cut(s) 971
BseMI GCAATG 3 cut(s) 927, 942, 988
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 3 cut(s) 106, 178, 768
BseRI GAGGAG 4 cut(s) 106, 984, 987, 990
BseSI GKGCMC 1 cut(s) 853
BseXI GCAGC 6 cut(s) 145, 156, 474, 477, 496, 658
Bsh1236I CGCG 1 cut(s) 1014
BshFI GGCC 5 cut(s) 38, 105, 177, 434, 614
BsiHKAI GWGCWC 2 cut(s) 98, 853
BsiSI CCGG 2 cut(s) 30, 807
BslI CCNNNNNNNGG 1 cut(s) 971
BsmAI GTCTC 1 cut(s) 20
BsnI GGCC 5 cut(s) 38, 105, 177, 434, 614
Bso31I GGTCTC 1 cut(s) 20
Bsp1286I GDGCHC 3 cut(s) 98, 590, 853
BspACI CCGC 4 cut(s) 35, 124, 131, 1012
BspANI GGCC 5 cut(s) 38, 105, 177, 434, 614
BspCNI CTCAG 1 cut(s) 71
BspFNI CGCG 1 cut(s) 1014
BspHI TCATGA 2 cut(s) 70, 253
BspPI GGATC 1 cut(s) 289
BspTNI GGTCTC 1 cut(s) 20
BsrDI GCAATG 3 cut(s) 927, 942, 988
BsrI ACTGG 3 cut(s) 106, 178, 768
BssECI CCNNGG 3 cut(s) 30, 720, 856
BssNI GRCGYC 1 cut(s) 462
BssSI CACGAG 1 cut(s) 188
BssT1I CCWWGG 2 cut(s) 720, 856
Bst2BI CACGAG 1 cut(s) 188
Bst4CI ACNGT 2 cut(s) 141, 149
Bst6I CTCTTC 1 cut(s) 222
BstACI GRCGYC 1 cut(s) 462
BstAPI GCANNNNNTGC 1 cut(s) 490
BstBAI YACGTR 1 cut(s) 923
BstC8I GCNNGC 1 cut(s) 128
BstDEI CTNAG 1 cut(s) 58
BstENI CCTNNNNNAGG 1 cut(s) 969
BstF5I GGATG 2 cut(s) 497, 546
BstFNI CGCG 1 cut(s) 1014
BstH2I RGCGCY 1 cut(s) 334
BstHHI GCGC 1 cut(s) 333
BstMAI GTCTC 1 cut(s) 20
BstMWI GCNNNNNNNGC 3 cut(s) 102, 453, 490
BstSCI CCNGG 2 cut(s) 29, 806
BstSLI GKGCMC 1 cut(s) 853
BstUI CGCG 1 cut(s) 1014
BstV1I GCAGC 6 cut(s) 145, 156, 474, 477, 496, 658
BstV2I GAAGAC 1 cut(s) 640
BsuI GTATCC 2 cut(s) 305, 682
BsuRI GGCC 5 cut(s) 38, 105, 177, 434, 614
BtsCI GGATG 2 cut(s) 497, 546
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 1 cut(s) 128
CaiI CAGNNNCTG 1 cut(s) 490
CciI TCATGA 2 cut(s) 70, 253
CfoI GCGC 1 cut(s) 333
Cfr13I GGNCC 2 cut(s) 613, 733
CseI GACGC 1 cut(s) 470
Csp6I GTAC 3 cut(s) 142, 163, 544
CviAII CATG 7 cut(s) 71, 107, 254, 343, 457, 610, 1057
CviQI GTAC 3 cut(s) 142, 163, 544
DdeI CTNAG 1 cut(s) 58
DraI TTTAAA 1 cut(s) 1051
EaeI YGGCCR 2 cut(s) 103, 432
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco130I CCWWGG 2 cut(s) 720, 856
Eco24I GRGCYC 1 cut(s) 590
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 733
Eco47III AGCGCT 1 cut(s) 332
Eco57I CTGAAG 1 cut(s) 629
Eco72I CACGTG 1 cut(s) 923
EcoNI CCTNNNNNAGG 1 cut(s) 969
EcoT14I CCWWGG 2 cut(s) 720, 856
EcoT38I GRGCYC 1 cut(s) 590
ErhI CCWWGG 2 cut(s) 720, 856
FaeI CATG 7 cut(s) 74, 110, 257, 346, 460, 613, 1060
FalI AAGNNNNNCTT 2 cut(s) 320, 352
FatI CATG 7 cut(s) 70, 106, 253, 342, 456, 609, 1056
FbaI TGATCA 3 cut(s) 250, 370, 832
Fnu4HI GCNGC 8 cut(s) 36, 131, 134, 170, 485, 488, 491, 672
FokI GGATG 2 cut(s) 484, 533
FriOI GRGCYC 1 cut(s) 590
Fsp4HI GCNGC 8 cut(s) 36, 131, 134, 170, 485, 488, 491, 672
FspBI CTAG 2 cut(s) 966, 1007
GlaI GCGC 1 cut(s) 332
GluI GCNGC 8 cut(s) 36, 131, 134, 170, 485, 488, 491, 672
HaeII RGCGCY 1 cut(s) 334
HaeIII GGCC 5 cut(s) 38, 105, 177, 434, 614
HapII CCGG 2 cut(s) 30, 807
HgaI GACGC 1 cut(s) 470
HhaI GCGC 1 cut(s) 333
Hin1I GRCGYC 1 cut(s) 462
Hin1II CATG 7 cut(s) 74, 110, 257, 346, 460, 613, 1060
Hin6I GCGC 1 cut(s) 331
HinP1I GCGC 1 cut(s) 331
HincII GTYRAC 2 cut(s) 15, 418
HindII GTYRAC 2 cut(s) 15, 418
HinfI GANTC 3 cut(s) 449, 620, 908
HpaII CCGG 2 cut(s) 30, 807
Hpy166II GTNNAC 4 cut(s) 15, 418, 733, 851
Hpy188I TCNGA 8 cut(s) 61, 87, 409, 440, 625, 648, 758, 1020
Hpy188III TCNNGA 2 cut(s) 71, 254
Hpy8I GTNNAC 4 cut(s) 15, 418, 733, 851
Hpy99I CGWCG 2 cut(s) 22, 440
HpyAV CCTTC 7 cut(s) 16, 104, 357, 653, 805, 851, 878
HpyCH4III ACNGT 2 cut(s) 141, 149
HpyCH4IV ACGT 1 cut(s) 922
HpyCH4V TGCA 6 cut(s) 55, 172, 195, 674, 851, 947
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 453, 490
HpyF3I CTNAG 1 cut(s) 58
HpySE526I ACGT 1 cut(s) 922
Hsp92I GRCGYC 1 cut(s) 462
Hsp92II CATG 7 cut(s) 74, 110, 257, 346, 460, 613, 1060
HspAI GCGC 1 cut(s) 331
Ksp22I TGATCA 3 cut(s) 250, 370, 832
LmnI GCTCC 3 cut(s) 93, 645, 815
Lsp1109I GCAGC 6 cut(s) 145, 156, 474, 477, 496, 658
MaeI CTAG 2 cut(s) 966, 1007
MaeII ACGT 1 cut(s) 922
MfeI CAATTG 3 cut(s) 273, 300, 726
MhlI GDGCHC 3 cut(s) 98, 590, 853
MlsI TGGCCA 1 cut(s) 105
MluCI AATT 7 cut(s) 78, 265, 273, 300, 726, 787, 797
MluNI TGGCCA 1 cut(s) 105
MlyI GAGTC 2 cut(s) 458, 902
MmeI TCCRAC 2 cut(s) 418, 525
Mox20I TGGCCA 1 cut(s) 105
MscI TGGCCA 1 cut(s) 105
MseI TTAA 6 cut(s) 378, 467, 681, 870, 903, 1050
MslI CAYNNNNRTG 3 cut(s) 150, 378, 1042
Msp20I TGGCCA 1 cut(s) 105
MspA1I CMGCKG 2 cut(s) 169, 487
MspI CCGG 2 cut(s) 30, 807
MspR9I CCNGG 2 cut(s) 31, 808
MunI CAATTG 3 cut(s) 273, 300, 726
MvnI CGCG 1 cut(s) 1014
MwoI GCNNNNNNNGC 3 cut(s) 102, 453, 490
NciI CCSGG 2 cut(s) 31, 808
NlaIII CATG 7 cut(s) 74, 110, 257, 346, 460, 613, 1060
NmeAIII GCCGAG 1 cut(s) 647
PagI TCATGA 2 cut(s) 70, 253
PcsI WCGNNNNNNNCGW 1 cut(s) 444
PfeI GAWTC 1 cut(s) 620
PfoI TCCNGGA 1 cut(s) 806
PkrI GCNGC 8 cut(s) 37, 132, 135, 171, 486, 489, 492, 673
PleI GAGTC 2 cut(s) 457, 902
PmaCI CACGTG 1 cut(s) 923
PmlI CACGTG 1 cut(s) 923
PpsI GAGTC 2 cut(s) 457, 902
Ppu21I YACGTR 1 cut(s) 923
PshBI ATTAAT 3 cut(s) 378, 870, 903
PspCI CACGTG 1 cut(s) 923
PspPI GGNCC 2 cut(s) 613, 733
PstNI CAGNNNCTG 1 cut(s) 490
PvuII CAGCTG 2 cut(s) 169, 487
RsaI GTAC 3 cut(s) 143, 164, 545
RsaNI GTAC 3 cut(s) 142, 163, 544
RseI CAYNNNNRTG 3 cut(s) 150, 378, 1042
SaqAI TTAA 6 cut(s) 378, 467, 681, 870, 903, 1050
SatI GCNGC 8 cut(s) 36, 131, 134, 170, 485, 488, 491, 672
Sau96I GGNCC 2 cut(s) 613, 733
SchI GAGTC 2 cut(s) 458, 902
ScrFI CCNGG 2 cut(s) 31, 808
SduI GDGCHC 3 cut(s) 98, 590, 853
SetI ASST 9 cut(s) 171, 318, 489, 642, 681, 738, 832, 862, 925
SinI GGWCC 1 cut(s) 733
SmiMI CAYNNNNRTG 3 cut(s) 150, 378, 1042
SmlI CTYRAG 1 cut(s) 202
SmoI CTYRAG 1 cut(s) 202
Sse9I AATT 7 cut(s) 78, 265, 273, 300, 726, 787, 797
SsiI CCGC 4 cut(s) 35, 124, 131, 1012
SspMI CTAG 2 cut(s) 966, 1007
StyD4I CCNGG 2 cut(s) 29, 806
StyI CCWWGG 2 cut(s) 720, 856
TaaI ACNGT 2 cut(s) 141, 149
TaiI ACGT 1 cut(s) 925
TasI AATT 7 cut(s) 78, 265, 273, 300, 726, 787, 797
TatI WGTACW 1 cut(s) 543
TauI GCSGC 2 cut(s) 38, 133
TfiI GAWTC 1 cut(s) 620
Tru1I TTAA 6 cut(s) 378, 467, 681, 870, 903, 1050
Tru9I TTAA 6 cut(s) 378, 467, 681, 870, 903, 1050
TscAI CASTG 1 cut(s) 12
TseI GCWGC 6 cut(s) 133, 169, 484, 487, 490, 671
TspDTI ATGAA 7 cut(s) 90, 123, 168, 390, 598, 1026, 1041
TspRI CASTG 1 cut(s) 12
VneI GTGCAC 1 cut(s) 849
VpaK11BI GGWCC 1 cut(s) 733
VspI ATTAAT 3 cut(s) 378, 870, 903
XagI CCTNNNNNAGG 1 cut(s) 969
XapI RAATTY 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 1 cut(s) 727
XspI CTAG 2 cut(s) 966, 1007
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.