pycom05g32880

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr5
OG0012091
Physical Location & Seq
Forward (+)
32111285 .. 32113060
1776 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom05g32880.3

Sequence Viewer

Length: 1002 bp
ATGTCGTTGACGTCCAAACCAGATCGCGAATGGGGTAGTACCAGTACTAGTGGCGCCGGAAGTACTAGTAGCGGGTACCGCGATGATCCGCAGTCGCAGCATGATGAAGATGACGACGACGACGACGATGATGACGAGTACAGAAATTACTACATGAAGTGCAACATATCAAGCAGTAGCATATCCGAGATTGAGGAAGAGGAAGGTGATGATATCGATGACGAGAAGAAGGGTAAGATTAAAATACCAAGTGAGATCAAAGAGCTTTTCGGATTCAAAGGGTACCTGCCGCCGATGCCCTCCATCAAGGAAGATGTCGATTATCATAGCAGCCACGATGAGAGCGTTTATGTGGGAGTAGGGAAGGGCGAGTCCAGCATGGACGCGCTGACGTGGGCATTAAAGCACGCGGTTGATCCATCGTCGTCAACCACCGTGTATCTCATACATGTTTTTCCGGAGGTCACCTACATTCCCAGTCCATTGGGCAAGCTTCCAAAAAACCAAGTGAGCTCACAACAGGTAGAAACTTACATGGTCGAAGAAAGAGGCAAGAGGAGAGTGCTCCTTCACAAGTTCATTGATAAATGCTCGGCTGCAAAGGTAGATACAATACTGATTGAAAGTGATATGATCGGAAGGGCTATTTTGGACCTCATCCCTATTCTCAACATAACAAAGCTTGTCATTGGAACTAACAAATCTAATCTAAGGAAAGTTATGGCTAAGAAAGGCAGCGGGATTGGTGCTCAGATACTTCAAAGTGCACCCGAAGGCTGTGAGGTAGACATCATATGCCAAGGAAACCAAGTGACAAAGACGATGATGGATCAGCCTCAGCCACCGACTGAGTCGTCGTTCTCCCCACCTCCCAAGGACGGTACGACGACGATTACCAGTACTACTAATGGAACCACCAACTCTATGCAATTGCAAGGAGACCAACATCAGAGGACTGAAAAGCCGGCTTCTTCATTCTTCTGTTTTAAACCCAAGTCTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

334

Amino Acids

36.71

Weight (kDa)

4.86

Isoelectric Point (pI)

46.43

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47740 AT5G47740
fragaria_vesca FvH4_3g00270 FvH4_3g00270 FvH4_3g00270
malus_domestica MD05G1362400.v1.1
prunus_persica Prupe.4G003000_v2.0.a1
pyrus_communis pycom05g32880
rosa_chinensis RchiOBHm_Chr5g0000401
rosa_laevigata RLG00000030863
rosa_multiflora Rmu_sc0017532.1_g000001 Rmu_ssc0000181.1_g000001
rosa_roxburghii Rroxscaffold_1G00075760
rosa_rugosa Rorug04G0383300
rosa_samantha Rh5AG003100 Rh5BG004300 Rh5CG003300 Rh5DG003300
rosa_wichuraiana Rw5G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AasI GACNNNNNNGTC 1 cut(s) 853
AatII GACGTC 1 cut(s) 14
Acc36I ACCTGC 1 cut(s) 294
Acc65I GGTACC 2 cut(s) 75, 282
AccB1I GGYRCC 3 cut(s) 53, 75, 282
AccI GTMKAC 1 cut(s) 786
AccII CGCG 4 cut(s) 27, 81, 386, 410
AccIII TCCGGA 1 cut(s) 457
AciI CCGC 6 cut(s) 72, 79, 89, 290, 410, 738
AclWI GGATC 3 cut(s) 80, 410, 837
AcyI GRCGYC 2 cut(s) 11, 54
AfaI GTAC 8 cut(s) 40, 46, 64, 77, 140, 284, 883, 901
AfiI CCNNNNNNNGG 1 cut(s) 878
AflIII ACRYGT 1 cut(s) 448
AgsI TTSAA 3 cut(s) 277, 623, 761
AhlI ACTAGT 2 cut(s) 47, 65
AjiI CACGTC 1 cut(s) 393
AluBI AGCT 4 cut(s) 265, 493, 513, 682
AluI AGCT 4 cut(s) 265, 493, 513, 682
Alw21I GWGCWC 4 cut(s) 515, 567, 751, 769
Alw26I GTCTC 1 cut(s) 933
Alw44I GTGCAC 1 cut(s) 765
AlwI GGATC 3 cut(s) 80, 410, 837
Aor13HI TCCGGA 1 cut(s) 457
ApaLI GTGCAC 1 cut(s) 765
ApeKI GCWGC 4 cut(s) 97, 330, 596, 735
Asp718I GGTACC 2 cut(s) 75, 282
AspLEI GCGC 2 cut(s) 56, 388
AspS9I GGNCC 1 cut(s) 652
AsuHPI GGTGA 2 cut(s) 218, 457
AvaII GGWCC 1 cut(s) 652
BaeGI GKGCMC 1 cut(s) 769
BanI GGYRCC 3 cut(s) 53, 75, 282
BanII GRGCYC 1 cut(s) 515
Bbv12I GWGCWC 4 cut(s) 515, 567, 751, 769
BbvCI CCTCAGC 1 cut(s) 837
BbvI GCAGC 4 cut(s) 109, 342, 583, 747
BccI CCATC 3 cut(s) 311, 427, 820
BcoDI GTCTC 1 cut(s) 933
BcuI ACTAGT 2 cut(s) 47, 65
BfaI CTAG 2 cut(s) 48, 66
BfoI RGCGCY 1 cut(s) 57
BfuAI ACCTGC 1 cut(s) 294
BisI GCNGC 5 cut(s) 98, 290, 331, 597, 736
BlsI GCNGC 5 cut(s) 99, 291, 332, 598, 737
BmcAI AGTACT 3 cut(s) 46, 64, 901
Bme18I GGWCC 1 cut(s) 652
BmgBI CACGTC 1 cut(s) 393
BmgT120I GGNCC 1 cut(s) 652
BmiI GGNNCC 4 cut(s) 55, 77, 284, 913
BmrI ACTGGG 1 cut(s) 471
BmsI GCATC 1 cut(s) 285
BmuI ACTGGG 1 cut(s) 471
Bpu10I CCTNAGC 1 cut(s) 837
Bsa29I ATCGAT 1 cut(s) 216
BsaHI GRCGYC 2 cut(s) 11, 54
BsaI GGTCTC 1 cut(s) 933
BsaJI CCNNGG 2 cut(s) 799, 873
BsaWI WCCGGW 1 cut(s) 457
Bsc4I CCNNNNNNNGG 1 cut(s) 878
Bse118I RCCGGY 1 cut(s) 964
Bse1I ACTGG 3 cut(s) 42, 477, 897
BseAI TCCGGA 1 cut(s) 457
BseCI ATCGAT 1 cut(s) 216
BseDI CCNNGG 2 cut(s) 799, 873
BseGI GGATG 1 cut(s) 657
BseLI CCNNNNNNNGG 1 cut(s) 878
BseMII CTCAG 3 cut(s) 764, 840, 851
BseNI ACTGG 3 cut(s) 42, 477, 897
BseRI GAGGAG 1 cut(s) 571
BseSI GKGCMC 1 cut(s) 769
BseXI GCAGC 4 cut(s) 109, 342, 583, 747
Bsh1236I CGCG 4 cut(s) 27, 81, 386, 410
BshNI GGYRCC 3 cut(s) 53, 75, 282
BshVI ATCGAT 1 cut(s) 216
BsiHKAI GWGCWC 4 cut(s) 515, 567, 751, 769
BsiSI CCGG 3 cut(s) 57, 458, 965
BslI CCNNNNNNNGG 1 cut(s) 878
BsmAI GTCTC 1 cut(s) 933
Bso31I GGTCTC 1 cut(s) 933
Bsp1286I GDGCHC 4 cut(s) 515, 567, 751, 769
Bsp13I TCCGGA 1 cut(s) 457
Bsp143I GATC 6 cut(s) 22, 85, 255, 415, 633, 829
Bsp68I TCGCGA 1 cut(s) 27
BspACI CCGC 6 cut(s) 72, 79, 89, 290, 410, 738
BspCNI CTCAG 3 cut(s) 763, 841, 850
BspDI ATCGAT 1 cut(s) 216
BspEI TCCGGA 1 cut(s) 457
BspFNI CGCG 4 cut(s) 27, 81, 386, 410
BspLI GGNNCC 4 cut(s) 55, 77, 284, 913
BspMI ACCTGC 1 cut(s) 294
BspPI GGATC 3 cut(s) 80, 410, 837
BspT107I GGYRCC 3 cut(s) 53, 75, 282
BspTNI GGTCTC 1 cut(s) 933
BsrFI RCCGGY 1 cut(s) 964
BsrI ACTGG 3 cut(s) 42, 477, 897
BssAI RCCGGY 1 cut(s) 964
BssECI CCNNGG 2 cut(s) 799, 873
BssMI GATC 6 cut(s) 22, 85, 255, 415, 633, 829
BssNI GRCGYC 2 cut(s) 11, 54
BssT1I CCWWGG 2 cut(s) 799, 873
Bst4CI ACNGT 2 cut(s) 436, 881
Bst6I CTCTTC 1 cut(s) 192
BstACI GRCGYC 2 cut(s) 11, 54
BstC8I GCNNGC 3 cut(s) 408, 491, 966
BstDEI CTNAG 5 cut(s) 710, 726, 750, 837, 849
BstEII GGTNACC 1 cut(s) 463
BstF5I GGATG 1 cut(s) 657
BstFNI CGCG 4 cut(s) 27, 81, 386, 410
BstH2I RGCGCY 1 cut(s) 57
BstHHI GCGC 2 cut(s) 56, 388
BstKTI GATC 6 cut(s) 25, 88, 258, 418, 636, 832
BstMAI GTCTC 1 cut(s) 933
BstMBI GATC 6 cut(s) 22, 85, 255, 415, 633, 829
BstMWI GCNNNNNNNGC 4 cut(s) 78, 97, 295, 375
BstNSI RCATGY 1 cut(s) 452
BstPI GGTNACC 1 cut(s) 463
BstSLI GKGCMC 1 cut(s) 769
BstUI CGCG 4 cut(s) 27, 81, 386, 410
BstV1I GCAGC 4 cut(s) 109, 342, 583, 747
BstXI CCANNNNNNTGG 1 cut(s) 484
Bsu15I ATCGAT 1 cut(s) 216
BsuTUI ATCGAT 1 cut(s) 216
BtgZI GCGATG 1 cut(s) 96
BtrI CACGTC 1 cut(s) 393
BtsCI GGATG 1 cut(s) 657
BtuMI TCGCGA 1 cut(s) 27
BveI ACCTGC 1 cut(s) 294
Cac8I GCNNGC 3 cut(s) 408, 491, 966
CfoI GCGC 2 cut(s) 56, 388
Cfr10I RCCGGY 1 cut(s) 964
Cfr13I GGNCC 1 cut(s) 652
ClaI ATCGAT 1 cut(s) 216
CseI GACGC 1 cut(s) 392
Csp6I GTAC 8 cut(s) 39, 45, 63, 76, 139, 283, 882, 900
CviAII CATG 5 cut(s) 101, 154, 379, 449, 535
CviQI GTAC 8 cut(s) 39, 45, 63, 76, 139, 283, 882, 900
DdeI CTNAG 5 cut(s) 710, 726, 750, 837, 849
DinI GGCGCC 1 cut(s) 55
DpnI GATC 6 cut(s) 24, 87, 257, 417, 635, 831
DpnII GATC 6 cut(s) 22, 85, 255, 415, 633, 829
DraI TTTAAA 1 cut(s) 988
DrdI GACNNNNNNGTC 1 cut(s) 853
DseDI GACNNNNNNGTC 1 cut(s) 853
Eam1104I CTCTTC 1 cut(s) 192
EarI CTCTTC 1 cut(s) 192
Ecl136II GAGCTC 1 cut(s) 513
Eco130I CCWWGG 2 cut(s) 799, 873
Eco24I GRGCYC 1 cut(s) 515
Eco31I GGTCTC 1 cut(s) 933
Eco32I GATATC 1 cut(s) 214
Eco47I GGWCC 1 cut(s) 652
Eco53kI GAGCTC 1 cut(s) 513
Eco91I GGTNACC 1 cut(s) 463
EcoICRI GAGCTC 1 cut(s) 513
EcoO65I GGTNACC 1 cut(s) 463
EcoRV GATATC 1 cut(s) 214
EcoT14I CCWWGG 2 cut(s) 799, 873
EcoT38I GRGCYC 1 cut(s) 515
EgeI GGCGCC 1 cut(s) 55
EheI GGCGCC 1 cut(s) 55
ErhI CCWWGG 2 cut(s) 799, 873
FaeI CATG 5 cut(s) 104, 157, 382, 452, 538
FatI CATG 5 cut(s) 100, 153, 378, 448, 534
FauI CCCGC 2 cut(s) 65, 731
FauNDI CATATG 1 cut(s) 794
FblI GTMKAC 1 cut(s) 786
Fnu4HI GCNGC 5 cut(s) 98, 290, 331, 597, 736
FokI GGATG 1 cut(s) 644
FriOI GRGCYC 1 cut(s) 515
Fsp4HI GCNGC 5 cut(s) 98, 290, 331, 597, 736
FspBI CTAG 2 cut(s) 48, 66
GlaI GCGC 2 cut(s) 55, 387
GluI GCNGC 5 cut(s) 98, 290, 331, 597, 736
HaeII RGCGCY 1 cut(s) 57
HapII CCGG 3 cut(s) 57, 458, 965
HgaI GACGC 1 cut(s) 392
HhaI GCGC 2 cut(s) 56, 388
Hin1I GRCGYC 2 cut(s) 11, 54
Hin1II CATG 5 cut(s) 104, 157, 382, 452, 538
Hin6I GCGC 2 cut(s) 54, 386
HinP1I GCGC 2 cut(s) 54, 386
HincII GTYRAC 2 cut(s) 9, 429
HindII GTYRAC 2 cut(s) 9, 429
HindIII AAGCTT 2 cut(s) 491, 680
HinfI GANTC 3 cut(s) 273, 371, 851
HpaII CCGG 3 cut(s) 57, 458, 965
HphI GGTGA 2 cut(s) 218, 457
Hpy166II GTNNAC 4 cut(s) 9, 429, 767, 787
Hpy188I TCNGA 5 cut(s) 187, 272, 638, 753, 951
Hpy188III TCNNGA 2 cut(s) 26, 458
Hpy8I GTNNAC 4 cut(s) 9, 429, 767, 787
Hpy99I CGWCG 8 cut(s) 119, 122, 125, 128, 427, 859, 889, 892
HpyAV CCTTC 6 cut(s) 197, 223, 358, 578, 633, 767
HpyCH4III ACNGT 2 cut(s) 436, 881
HpyCH4IV ACGT 2 cut(s) 11, 392
HpyCH4V TGCA 5 cut(s) 162, 599, 767, 928, 934
HpyF10VI GCNNNNNNNGC 4 cut(s) 78, 97, 295, 375
HpyF3I CTNAG 5 cut(s) 710, 726, 750, 837, 849
HpySE526I ACGT 2 cut(s) 11, 392
Hsp92I GRCGYC 2 cut(s) 11, 54
Hsp92II CATG 5 cut(s) 104, 157, 382, 452, 538
HspAI GCGC 2 cut(s) 54, 386
KasI GGCGCC 1 cut(s) 53
Kpn2I TCCGGA 1 cut(s) 457
KpnI GGTACC 2 cut(s) 79, 286
KroI GCCGGC 1 cut(s) 964
KroNI GCCGGC 1 cut(s) 966
Kzo9I GATC 6 cut(s) 22, 85, 255, 415, 633, 829
LmnI GCTCC 1 cut(s) 570
Lsp1109I GCAGC 4 cut(s) 109, 342, 583, 747
LweI GCATC 1 cut(s) 285
MaeI CTAG 2 cut(s) 48, 66
MaeII ACGT 2 cut(s) 11, 392
MaeIII GTNAC 2 cut(s) 463, 811
MalI GATC 6 cut(s) 24, 87, 257, 417, 635, 831
MboI GATC 6 cut(s) 22, 85, 255, 415, 633, 829
MboII GAAGA 7 cut(s) 119, 209, 238, 323, 554, 963, 970
MfeI CAATTG 1 cut(s) 929
MhlI GDGCHC 4 cut(s) 515, 567, 751, 769
MluCI AATT 2 cut(s) 145, 929
Mly113I GGCGCC 1 cut(s) 54
MlyI GAGTC 2 cut(s) 380, 860
MroI TCCGGA 1 cut(s) 457
MroNI GCCGGC 1 cut(s) 964
MseI TTAA 4 cut(s) 240, 401, 987, 1000
MspA1I CMGCKG 1 cut(s) 738
MspI CCGG 3 cut(s) 57, 458, 965
MunI CAATTG 1 cut(s) 929
MvnI CGCG 4 cut(s) 27, 81, 386, 410
MwoI GCNNNNNNNGC 4 cut(s) 78, 97, 295, 375
NaeI GCCGGC 1 cut(s) 966
NarI GGCGCC 1 cut(s) 54
NdeI CATATG 1 cut(s) 794
NdeII GATC 6 cut(s) 22, 85, 255, 415, 633, 829
NgoMIV GCCGGC 1 cut(s) 964
NlaIII CATG 5 cut(s) 104, 157, 382, 452, 538
NlaIV GGNNCC 4 cut(s) 55, 77, 284, 913
NmeAIII GCCGAG 1 cut(s) 572
NmuCI GTSAC 2 cut(s) 463, 811
NruI TCGCGA 1 cut(s) 27
NspI RCATGY 1 cut(s) 452
PciI ACATGT 1 cut(s) 448
PcsI WCGNNNNNNNCGW 4 cut(s) 120, 123, 132, 342
PdiI GCCGGC 1 cut(s) 966
PfeI GAWTC 1 cut(s) 273
PflFI GACNNNGTC 1 cut(s) 850
PkrI GCNGC 5 cut(s) 99, 291, 332, 598, 737
PleI GAGTC 2 cut(s) 379, 859
PluTI GGCGCC 1 cut(s) 57
PpsI GAGTC 2 cut(s) 379, 859
PscI ACATGT 1 cut(s) 448
Psp124BI GAGCTC 1 cut(s) 515
PspEI GGTNACC 1 cut(s) 463
PspN4I GGNNCC 4 cut(s) 55, 77, 284, 913
PspPI GGNCC 1 cut(s) 652
PsyI GACNNNGTC 1 cut(s) 850
RruI TCGCGA 1 cut(s) 27
RsaI GTAC 8 cut(s) 40, 46, 64, 77, 140, 284, 883, 901
RsaNI GTAC 8 cut(s) 39, 45, 63, 76, 139, 283, 882, 900
SacI GAGCTC 1 cut(s) 515
SaqAI TTAA 4 cut(s) 240, 401, 987, 1000
SatI GCNGC 5 cut(s) 98, 290, 331, 597, 736
Sau3AI GATC 6 cut(s) 22, 85, 255, 415, 633, 829
Sau96I GGNCC 1 cut(s) 652
ScaI AGTACT 3 cut(s) 46, 64, 901
SchI GAGTC 2 cut(s) 380, 860
SduI GDGCHC 4 cut(s) 515, 567, 751, 769
SfaNI GCATC 1 cut(s) 285
SfoI GGCGCC 1 cut(s) 55
SinI GGWCC 1 cut(s) 652
SpeI ACTAGT 2 cut(s) 47, 65
Sse9I AATT 2 cut(s) 145, 929
SsiI CCGC 6 cut(s) 72, 79, 89, 290, 410, 738
SspDI GGCGCC 1 cut(s) 53
SspMI CTAG 2 cut(s) 48, 66
SstI GAGCTC 1 cut(s) 515
StyI CCWWGG 2 cut(s) 799, 873
TaaI ACNGT 2 cut(s) 436, 881
TaiI ACGT 2 cut(s) 14, 395
TaqI TCGA 3 cut(s) 216, 318, 540
TasI AATT 2 cut(s) 145, 929
TatI WGTACW 4 cut(s) 44, 62, 138, 899
TauI GCSGC 1 cut(s) 292
TfiI GAWTC 1 cut(s) 273
Tru1I TTAA 4 cut(s) 240, 401, 987, 1000
Tru9I TTAA 4 cut(s) 240, 401, 987, 1000
TseFI GTSAC 2 cut(s) 463, 811
TseI GCWGC 4 cut(s) 97, 330, 596, 735
Tsp45I GTSAC 2 cut(s) 463, 811
TspDTI ATGAA 4 cut(s) 120, 170, 568, 963
Tth111I GACNNNGTC 1 cut(s) 850
VneI GTGCAC 1 cut(s) 765
VpaK11BI GGWCC 1 cut(s) 652
XceI RCATGY 1 cut(s) 452
XcmI CCANNNNNNNNNTGG 1 cut(s) 27
XmiI GTMKAC 1 cut(s) 786
XspI CTAG 2 cut(s) 48, 66
ZraI GACGTC 1 cut(s) 12
ZrmI AGTACT 3 cut(s) 46, 64, 901
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.