Rh5CG003300

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr5C
OG0012091
Physical Location & Seq
Reverse (-)
234958 .. 241760
6803 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh5CG003300.1

Sequence Viewer

Length: 1059 bp
ATGTCAGTGTGGTTGACGACGAAGGAGACCGGGGCGGCCTTGCCCTTGCACTCAGAAATAGATCATGATGAAATTCATCGGACGAGGAGCACTACTGGCCATGAAGAAAGTGAATACCGTCAGCCGCAGCAACAGTACCACCGTGATGAAGATGAGTACCAGCTGCAAGGCCAGTTTCAGCACGAGTGCAATATCTCAAGGAATAGTGTATGGGAGATAGAAGAGGAAGAAGAAGAAGATGATGATGAGGGTTTGAATTATTCAATTGGAGGATCAAATACTAGTATCCCAATTGAGATCAAAGAGCTTTTCGGGGCGAAGCGCTACTTTCCCATGCCTTCCATCAAGGAAGAACAATATGATATTAATGGTCTGCCTCATTCTTCTTCATCGTCTGACATTGTTGACTGCGTTTATGTTGCCGTCGGAAAGAGCGAGTCAAGCATGGACGCCTTAAACTACGCCGTCAAGCAGCTGCTGCTGTCATCCAACACTATCCTCTATCTCATACACATTTTCCCAGAGATCAAGTACATCCCAAGTCCATTAGGAAAACTTCCAAAAAATCAAGTGAGCCCAGAACAAGTGGAAAGTTTCATGGCCCAAGAATCAGACAAGAGAAGACAGCTCCTTCAGAAGTATATTGATAAATGCTCGGCTGCAAAGGTTAAGATGGATACTCTGCTGATTGAAAGTGATATGATCGCCAAGGCTATTGTGGACCTTATCCCAATTCTCAACATCAGAAAACTGGTGCTTGGAACGAAAAAATCTAATTTGAGGAAATTGATGTCCGGGAAGGGAGCAAGGGGAATAGCTGATCAAGTCCTTCAAAGTGCACCCCAAGGTTGTGAGATTAATATCATTTGTGAAGGAAATCAAGTGATGATTAATGACTCGCTTTCCCCACGTGGCATTGCCAATGATCGCATTGCACCAAATACACTTTCCCCTAAAGGAGGAGGAGGCAATGATGATAACCCTAACTCTATCCTAGACCGCGATCAGAGGAATGAAGCCTGTTCATTCCTGTGTTTTAAACCCATGTTCTCCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

352

Amino Acids

39.51

Weight (kDa)

5.01

Isoelectric Point (pI)

64.31

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 139 - 280 7.9e-06 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47740 AT5G47740
fragaria_vesca FvH4_3g00270 FvH4_3g00270 FvH4_3g00270
malus_domestica MD05G1362400.v1.1
prunus_persica Prupe.4G003000_v2.0.a1
pyrus_communis pycom05g32880
rosa_chinensis RchiOBHm_Chr5g0000401
rosa_laevigata RLG00000030863
rosa_multiflora Rmu_sc0017532.1_g000001 Rmu_ssc0000181.1_g000001
rosa_roxburghii Rroxscaffold_1G00075760
rosa_rugosa Rorug04G0383300
rosa_samantha Rh5AG003100 Rh5BG004300 Rh5CG003300 Rh5DG003300
rosa_wichuraiana Rw5G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 1002
AciI CCGC 3 cut(s) 35, 125, 1000
AclWI GGATC 1 cut(s) 280
AcoI YGGCCR 1 cut(s) 97
AcsI RAATTY 1 cut(s) 72
AcuI CTGAAG 1 cut(s) 617
AcvI CACGTG 1 cut(s) 911
AcyI GRCGYC 1 cut(s) 450
AfaI GTAC 3 cut(s) 137, 158, 533
AfeI AGCGCT 1 cut(s) 323
AfiI CCNNNNNNNGG 1 cut(s) 959
AgsI TTSAA 4 cut(s) 256, 264, 692, 833
AhlI ACTAGT 1 cut(s) 281
AjuI GAANNNNNNNTTGG 2 cut(s) 931, 963
AluBI AGCT 5 cut(s) 163, 307, 475, 628, 818
AluI AGCT 5 cut(s) 163, 307, 475, 628, 818
Alw21I GWGCWC 2 cut(s) 92, 841
Alw26I GTCTC 1 cut(s) 20
Alw44I GTGCAC 1 cut(s) 837
AlwI GGATC 1 cut(s) 280
AlwNI CAGNNNCTG 1 cut(s) 478
Aor51HI AGCGCT 1 cut(s) 323
AoxI GGCC 4 cut(s) 36, 97, 169, 600
ApaLI GTGCAC 1 cut(s) 837
ApeKI GCWGC 6 cut(s) 127, 163, 472, 475, 478, 659
ApoI RAATTY 1 cut(s) 72
AseI ATTAAT 3 cut(s) 366, 858, 891
AspLEI GCGC 1 cut(s) 324
AspS9I GGNCC 2 cut(s) 601, 721
AsuC2I CCSGG 2 cut(s) 31, 796
AvaII GGWCC 1 cut(s) 721
BaeGI GKGCMC 1 cut(s) 841
BalI TGGCCA 1 cut(s) 99
BanII GRGCYC 1 cut(s) 578
BauI CACGAG 1 cut(s) 182
BbrPI CACGTG 1 cut(s) 911
BbsI GAAGAC 1 cut(s) 628
Bbv12I GWGCWC 2 cut(s) 92, 841
BbvI GCAGC 6 cut(s) 139, 150, 462, 465, 484, 646
BccI CCATC 2 cut(s) 350, 667
BceAI ACGGC 2 cut(s) 407, 449
BciVI GTATCC 2 cut(s) 296, 670
BclI TGATCA 1 cut(s) 820
BcnI CCSGG 2 cut(s) 31, 796
BcoDI GTCTC 1 cut(s) 20
BcuI ACTAGT 1 cut(s) 281
BfaI CTAG 2 cut(s) 282, 995
BfoI RGCGCY 1 cut(s) 325
BfuI GTATCC 2 cut(s) 296, 670
BisI GCNGC 8 cut(s) 36, 125, 128, 164, 473, 476, 479, 660
BlsI GCNGC 8 cut(s) 37, 126, 129, 165, 474, 477, 480, 661
Bme1390I CCNGG 2 cut(s) 31, 796
Bme18I GGWCC 1 cut(s) 721
BmgT120I GGNCC 2 cut(s) 601, 721
BmrFI CCNGG 2 cut(s) 31, 796
BpiI GAAGAC 1 cut(s) 628
BpuEI CTTGAG 1 cut(s) 181
BpuMI CCSGG 2 cut(s) 31, 796
BsaAI YACGTR 1 cut(s) 911
BsaBI GATNNNNATC 1 cut(s) 860
BsaHI GRCGYC 1 cut(s) 450
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 30, 708, 844
Bsc4I CCNNNNNNNGG 1 cut(s) 959
Bse1I ACTGG 3 cut(s) 100, 172, 756
Bse3DI GCAATG 3 cut(s) 915, 930, 976
Bse8I GATNNNNATC 1 cut(s) 860
BseDI CCNNGG 3 cut(s) 30, 708, 844
BseGI GGATG 2 cut(s) 485, 534
BseJI GATNNNNATC 1 cut(s) 860
BseLI CCNNNNNNNGG 1 cut(s) 959
BseMI GCAATG 3 cut(s) 915, 930, 976
BseMII CTCAG 1 cut(s) 66
BseNI ACTGG 3 cut(s) 100, 172, 756
BseRI GAGGAG 3 cut(s) 100, 975, 978
BseSI GKGCMC 1 cut(s) 841
BseXI GCAGC 6 cut(s) 139, 150, 462, 465, 484, 646
Bsh1236I CGCG 1 cut(s) 1002
BshFI GGCC 4 cut(s) 38, 99, 171, 602
BsiHKAI GWGCWC 2 cut(s) 92, 841
BsiSI CCGG 2 cut(s) 30, 795
BslI CCNNNNNNNGG 1 cut(s) 959
BsmAI GTCTC 1 cut(s) 20
BsnI GGCC 4 cut(s) 38, 99, 171, 602
Bso31I GGTCTC 1 cut(s) 20
Bsp1286I GDGCHC 3 cut(s) 92, 578, 841
Bsp143I GATC 8 cut(s) 61, 272, 297, 525, 702, 820, 925, 1003
BspACI CCGC 3 cut(s) 35, 125, 1000
BspANI GGCC 4 cut(s) 38, 99, 171, 602
BspCNI CTCAG 1 cut(s) 65
BspFNI CGCG 1 cut(s) 1002
BspHI TCATGA 1 cut(s) 64
BspPI GGATC 1 cut(s) 280
BspTNI GGTCTC 1 cut(s) 20
BsrDI GCAATG 3 cut(s) 915, 930, 976
BsrI ACTGG 3 cut(s) 100, 172, 756
BssECI CCNNGG 3 cut(s) 30, 708, 844
BssMI GATC 8 cut(s) 61, 272, 297, 525, 702, 820, 925, 1003
BssNI GRCGYC 1 cut(s) 450
BssSI CACGAG 1 cut(s) 182
BssT1I CCWWGG 2 cut(s) 708, 844
Bst2BI CACGAG 1 cut(s) 182
Bst4CI ACNGT 3 cut(s) 119, 135, 143
Bst6I CTCTTC 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 450
BstAPI GCANNNNNTGC 1 cut(s) 478
BstBAI YACGTR 1 cut(s) 911
BstDEI CTNAG 1 cut(s) 52
BstENI CCTNNNNNAGG 1 cut(s) 957
BstF5I GGATG 2 cut(s) 485, 534
BstFNI CGCG 1 cut(s) 1002
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 8 cut(s) 64, 275, 300, 528, 705, 823, 928, 1006
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 8 cut(s) 61, 272, 297, 525, 702, 820, 925, 1003
BstMWI GCNNNNNNNGC 3 cut(s) 96, 441, 478
BstSCI CCNGG 2 cut(s) 29, 794
BstSLI GKGCMC 1 cut(s) 841
BstUI CGCG 1 cut(s) 1002
BstV1I GCAGC 6 cut(s) 139, 150, 462, 465, 484, 646
BstV2I GAAGAC 1 cut(s) 628
BsuI GTATCC 2 cut(s) 296, 670
BsuRI GGCC 4 cut(s) 38, 99, 171, 602
BtsCI GGATG 2 cut(s) 485, 534
BtsIMutI CAGTG 1 cut(s) 12
CaiI CAGNNNCTG 1 cut(s) 478
CciI TCATGA 1 cut(s) 64
CfoI GCGC 1 cut(s) 324
Cfr13I GGNCC 2 cut(s) 601, 721
CseI GACGC 1 cut(s) 458
Csp6I GTAC 3 cut(s) 136, 157, 532
CviAII CATG 6 cut(s) 65, 101, 334, 445, 598, 1045
CviQI GTAC 3 cut(s) 136, 157, 532
DdeI CTNAG 1 cut(s) 52
DpnI GATC 8 cut(s) 63, 274, 299, 527, 704, 822, 927, 1005
DpnII GATC 8 cut(s) 61, 272, 297, 525, 702, 820, 925, 1003
DraI TTTAAA 1 cut(s) 1039
EaeI YGGCCR 1 cut(s) 97
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco130I CCWWGG 2 cut(s) 708, 844
Eco24I GRGCYC 1 cut(s) 578
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 721
Eco47III AGCGCT 1 cut(s) 323
Eco57I CTGAAG 1 cut(s) 617
Eco72I CACGTG 1 cut(s) 911
EcoNI CCTNNNNNAGG 1 cut(s) 957
EcoT14I CCWWGG 2 cut(s) 708, 844
EcoT38I GRGCYC 1 cut(s) 578
ErhI CCWWGG 2 cut(s) 708, 844
FaeI CATG 6 cut(s) 68, 104, 337, 448, 601, 1048
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FatI CATG 6 cut(s) 64, 100, 333, 444, 597, 1044
FbaI TGATCA 1 cut(s) 820
Fnu4HI GCNGC 8 cut(s) 36, 125, 128, 164, 473, 476, 479, 660
FokI GGATG 2 cut(s) 472, 521
FriOI GRGCYC 1 cut(s) 578
Fsp4HI GCNGC 8 cut(s) 36, 125, 128, 164, 473, 476, 479, 660
FspBI CTAG 2 cut(s) 282, 995
GlaI GCGC 1 cut(s) 323
GluI GCNGC 8 cut(s) 36, 125, 128, 164, 473, 476, 479, 660
HaeII RGCGCY 1 cut(s) 325
HaeIII GGCC 4 cut(s) 38, 99, 171, 602
HapII CCGG 2 cut(s) 30, 795
HgaI GACGC 1 cut(s) 458
HhaI GCGC 1 cut(s) 324
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 6 cut(s) 68, 104, 337, 448, 601, 1048
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HincII GTYRAC 2 cut(s) 15, 406
HindII GTYRAC 2 cut(s) 15, 406
HinfI GANTC 3 cut(s) 437, 608, 896
HpaII CCGG 2 cut(s) 30, 795
Hpy166II GTNNAC 4 cut(s) 15, 406, 721, 839
Hpy188I TCNGA 8 cut(s) 55, 81, 397, 428, 613, 636, 746, 1008
Hpy188III TCNNGA 1 cut(s) 65
Hpy8I GTNNAC 4 cut(s) 15, 406, 721, 839
Hpy99I CGWCG 2 cut(s) 22, 428
HpyAV CCTTC 6 cut(s) 16, 348, 641, 793, 839, 866
HpyCH4III ACNGT 3 cut(s) 119, 135, 143
HpyCH4IV ACGT 1 cut(s) 910
HpyCH4V TGCA 6 cut(s) 49, 166, 189, 662, 839, 935
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 441, 478
HpyF3I CTNAG 1 cut(s) 52
HpySE526I ACGT 1 cut(s) 910
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 6 cut(s) 68, 104, 337, 448, 601, 1048
HspAI GCGC 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 820
Kzo9I GATC 8 cut(s) 61, 272, 297, 525, 702, 820, 925, 1003
LmnI GCTCC 3 cut(s) 87, 633, 803
Lsp1109I GCAGC 6 cut(s) 139, 150, 462, 465, 484, 646
MaeI CTAG 2 cut(s) 282, 995
MaeII ACGT 1 cut(s) 910
MalI GATC 8 cut(s) 63, 274, 299, 527, 704, 822, 927, 1005
MboI GATC 8 cut(s) 61, 272, 297, 525, 702, 820, 925, 1003
MfeI CAATTG 2 cut(s) 264, 291
MhlI GDGCHC 3 cut(s) 92, 578, 841
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 7 cut(s) 72, 256, 264, 291, 732, 775, 785
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 2 cut(s) 446, 890
MmeI TCCRAC 2 cut(s) 406, 513
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 6 cut(s) 366, 455, 669, 858, 891, 1038
MslI CAYNNNNRTG 2 cut(s) 144, 1030
Msp20I TGGCCA 1 cut(s) 99
MspA1I CMGCKG 2 cut(s) 163, 475
MspI CCGG 2 cut(s) 30, 795
MspR9I CCNGG 2 cut(s) 31, 796
MunI CAATTG 2 cut(s) 264, 291
MvnI CGCG 1 cut(s) 1002
MwoI GCNNNNNNNGC 3 cut(s) 96, 441, 478
NciI CCSGG 2 cut(s) 31, 796
NdeII GATC 8 cut(s) 61, 272, 297, 525, 702, 820, 925, 1003
NlaIII CATG 6 cut(s) 68, 104, 337, 448, 601, 1048
NmeAIII GCCGAG 1 cut(s) 635
PagI TCATGA 1 cut(s) 64
PcsI WCGNNNNNNNCGW 1 cut(s) 432
PfeI GAWTC 1 cut(s) 608
PfoI TCCNGGA 1 cut(s) 794
PkrI GCNGC 8 cut(s) 37, 126, 129, 165, 474, 477, 480, 661
PleI GAGTC 2 cut(s) 445, 890
PmaCI CACGTG 1 cut(s) 911
PmlI CACGTG 1 cut(s) 911
PpsI GAGTC 2 cut(s) 445, 890
Ppu21I YACGTR 1 cut(s) 911
PshBI ATTAAT 3 cut(s) 366, 858, 891
PspCI CACGTG 1 cut(s) 911
PspPI GGNCC 2 cut(s) 601, 721
PstNI CAGNNNCTG 1 cut(s) 478
PvuII CAGCTG 2 cut(s) 163, 475
RsaI GTAC 3 cut(s) 137, 158, 533
RsaNI GTAC 3 cut(s) 136, 157, 532
RseI CAYNNNNRTG 2 cut(s) 144, 1030
SaqAI TTAA 6 cut(s) 366, 455, 669, 858, 891, 1038
SatI GCNGC 8 cut(s) 36, 125, 128, 164, 473, 476, 479, 660
Sau3AI GATC 8 cut(s) 61, 272, 297, 525, 702, 820, 925, 1003
Sau96I GGNCC 2 cut(s) 601, 721
SchI GAGTC 2 cut(s) 446, 890
ScrFI CCNGG 2 cut(s) 31, 796
SduI GDGCHC 3 cut(s) 92, 578, 841
SetI ASST 9 cut(s) 165, 309, 477, 630, 669, 726, 820, 850, 913
SinI GGWCC 1 cut(s) 721
SmiMI CAYNNNNRTG 2 cut(s) 144, 1030
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
SpeI ACTAGT 1 cut(s) 281
Sse9I AATT 7 cut(s) 72, 256, 264, 291, 732, 775, 785
SsiI CCGC 3 cut(s) 35, 125, 1000
SspMI CTAG 2 cut(s) 282, 995
StyD4I CCNGG 2 cut(s) 29, 794
StyI CCWWGG 2 cut(s) 708, 844
TaaI ACNGT 3 cut(s) 119, 135, 143
TaiI ACGT 1 cut(s) 913
TasI AATT 7 cut(s) 72, 256, 264, 291, 732, 775, 785
TatI WGTACW 1 cut(s) 531
TauI GCSGC 2 cut(s) 38, 127
TfiI GAWTC 1 cut(s) 608
Tru1I TTAA 6 cut(s) 366, 455, 669, 858, 891, 1038
Tru9I TTAA 6 cut(s) 366, 455, 669, 858, 891, 1038
TscAI CASTG 1 cut(s) 12
TseI GCWGC 6 cut(s) 127, 163, 472, 475, 478, 659
TspDTI ATGAA 8 cut(s) 65, 84, 117, 162, 378, 586, 1014, 1029
TspRI CASTG 1 cut(s) 12
VneI GTGCAC 1 cut(s) 837
VpaK11BI GGWCC 1 cut(s) 721
VspI ATTAAT 3 cut(s) 366, 858, 891
XagI CCTNNNNNAGG 1 cut(s) 957
XapI RAATTY 1 cut(s) 72
XcmI CCANNNNNNNNNTGG 1 cut(s) 715
XspI CTAG 2 cut(s) 282, 995
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.