FvH4_3g00270

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb3
OG0012091
Physical Location & Seq
Reverse (-)
155171 .. 157643
2473 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_3g00270.t1

Sequence Viewer

Length: 1152 bp
ATGTCAGTGTTGTTGACGACCAAGGAGACAGGGGCGGTCTTGCCCTTGGCCTCCCCTTCTGATATAGATCATGATGAAATCCAGCAGAGTAGTACTAGCACTGCTGGCCATGTCGACGGAAGGGAAAACCATCAGCCGCAGCAACAGTATCACCGTGATGTAGATGAAGATGATGAGTATCAGCTGCAGGGCCAGTTCCAGCACGAGTGCAACATCTCAAGGACTAGTGTGTGGGAGATAGAAGAGGAAGGAGAAGAAGATGATCTTCATGAGGGTTCAAACTATTCAATTGGAGGATCACATACTGGTATCCCAATTCAGATCAAAGAGCTTTTCGGGGAGAAGCGTTACTTTCCCATGCCTTCCATCAAGGAAGAACAATATGATCATATTACTGGTCTGCCTCGTTCTTCTTCATCGTATAATAACTCTAACGGCGACATTGTTGACTGCGTTTATGTGGCCGTCGGAAAGAGCGAGTCAAGCATGGACGCCTTAAACTACGCCGTCAAGCAGGTGGTGCCGACACCTAACACCATCCTCTATCTCATACACATTTTCCCGGAGATCAAATACATCCCAAGTCCATTAGGAAAACTTCCAAAAAGTCAAGTGAGCCCAGAACAAGTGGAAAGCTTCATGGCCCAAGAATCAGGCAAGAGAAGACAGCTCCTTCAGAAGTATATTGATACATGCTCGGCTGCAAAGGTTTCGGTGGATACTCTGTTGATTGAAAGTGATATGATCGCAAAGGCTATTTTGGACCTTATTCCTATTCTCAACATAAGAAAACTGGTGCTCGGAACTAACAAATCTAATTCCAGGAAATTGATGTCTGGGAAAGGAGCAAGCGGGATAGCTGATCAAGTCCTTCAAGGCGCACCCCAAGGTTGTGAGATTAATATCATTTGTCAAGGAAATGACTCGCTTTCCTTCAAGGTGCACCCCAAGGTGATGATTAATGACTCGCTTTCCCCACGTGGCATTGCCAATGCCATTGATGATCACATTCCGCCAGAGACTCTTTCCCCTAAAGGAGGAGCCAACTGTGATAACCCTAACTCAGTCCTAGTCGACGCCTCTCAGAAAAATGAACCCTTTTCATTCCTGTGTTTTAAACCCAAGTTCTCACATTCTTCTAAGTTATTATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

384

Amino Acids

42.14

Weight (kDa)

5.13

Isoelectric Point (pI)

55.74

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47740 AT5G47740
fragaria_vesca FvH4_3g00270 FvH4_3g00270 FvH4_3g00270
malus_domestica MD05G1362400.v1.1
prunus_persica Prupe.4G003000_v2.0.a1
pyrus_communis pycom05g32880
rosa_chinensis RchiOBHm_Chr5g0000401
rosa_laevigata RLG00000030863
rosa_multiflora Rmu_sc0017532.1_g000001 Rmu_ssc0000181.1_g000001
rosa_roxburghii Rroxscaffold_1G00075760
rosa_rugosa Rorug04G0383300
rosa_samantha Rh5AG003100 Rh5BG004300 Rh5CG003300 Rh5DG003300
rosa_wichuraiana Rw5G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 505
Acc36I ACCTGC 1 cut(s) 505
AccB1I GGYRCC 1 cut(s) 520
AccI GTMKAC 2 cut(s) 114, 1074
AciI CCGC 4 cut(s) 35, 137, 852, 1013
AclWI GGATC 1 cut(s) 304
AcoI YGGCCR 2 cut(s) 106, 462
AcuI CTGAAG 1 cut(s) 659
AcvI CACGTG 1 cut(s) 980
AcyI GRCGYC 2 cut(s) 492, 1077
AfaI GTAC 1 cut(s) 94
AfiI CCNNNNNNNGG 1 cut(s) 1037
AgsI TTSAA 5 cut(s) 279, 288, 734, 875, 937
AhlI ACTAGT 1 cut(s) 224
AjnI CCWGG 1 cut(s) 821
AluBI AGCT 5 cut(s) 184, 331, 636, 670, 860
AluI AGCT 5 cut(s) 184, 331, 636, 670, 860
Alw21I GWGCWC 2 cut(s) 801, 945
Alw26I GTCTC 2 cut(s) 20, 1013
Alw44I GTGCAC 1 cut(s) 941
AlwI GGATC 1 cut(s) 304
AoxI GGCC 5 cut(s) 48, 106, 190, 462, 642
ApaLI GTGCAC 1 cut(s) 941
ApeKI GCWGC 3 cut(s) 139, 184, 701
AseI ATTAAT 2 cut(s) 900, 960
AspLEI GCGC 1 cut(s) 881
AspS9I GGNCC 3 cut(s) 190, 643, 763
AsuC2I CCSGG 1 cut(s) 563
AsuHPI GGTGA 2 cut(s) 143, 964
AvaII GGWCC 1 cut(s) 763
BaeGI GKGCMC 1 cut(s) 945
BalI TGGCCA 1 cut(s) 108
BanI GGYRCC 1 cut(s) 520
BanII GRGCYC 1 cut(s) 620
BauI CACGAG 1 cut(s) 203
BbrPI CACGTG 1 cut(s) 980
BbsI GAAGAC 1 cut(s) 670
Bbv12I GWGCWC 2 cut(s) 801, 945
BbvI GCAGC 3 cut(s) 151, 171, 688
BccI CCATC 3 cut(s) 138, 374, 545
BceAI ACGGC 3 cut(s) 449, 451, 491
BcgI CGANNNNNNTGC 2 cut(s) 693, 727
BciT130I CCWGG 1 cut(s) 823
BciVI GTATCC 2 cut(s) 320, 712
BclI TGATCA 3 cut(s) 385, 862, 1003
BcnI CCSGG 1 cut(s) 563
BcoDI GTCTC 2 cut(s) 20, 1013
BcuI ACTAGT 1 cut(s) 224
BfaI CTAG 3 cut(s) 96, 225, 1070
BfmI CTRYAG 1 cut(s) 185
BfuAI ACCTGC 1 cut(s) 505
BfuI GTATCC 2 cut(s) 320, 712
BisI GCNGC 4 cut(s) 137, 140, 185, 702
BlsI GCNGC 4 cut(s) 138, 141, 186, 703
BmcAI AGTACT 1 cut(s) 94
Bme1390I CCNGG 2 cut(s) 563, 823
Bme18I GGWCC 1 cut(s) 763
BmgT120I GGNCC 3 cut(s) 190, 643, 763
BmiI GGNNCC 2 cut(s) 522, 1042
BmrFI CCNGG 2 cut(s) 563, 823
BpiI GAAGAC 1 cut(s) 670
BpuEI CTTGAG 1 cut(s) 202
BpuMI CCSGG 1 cut(s) 563
BsaAI YACGTR 1 cut(s) 980
BsaBI GATNNNNATC 3 cut(s) 66, 177, 902
BsaHI GRCGYC 2 cut(s) 492, 1077
BsaJI CCNNGG 4 cut(s) 21, 45, 886, 948
Bsc4I CCNNNNNNNGG 1 cut(s) 1037
Bse1I ACTGG 4 cut(s) 193, 310, 400, 798
Bse3DI GCAATG 1 cut(s) 984
Bse8I GATNNNNATC 3 cut(s) 66, 177, 902
BseBI CCWGG 1 cut(s) 823
BseDI CCNNGG 4 cut(s) 21, 45, 886, 948
BseGI GGATG 2 cut(s) 537, 576
BseJI GATNNNNATC 3 cut(s) 66, 177, 902
BseLI CCNNNNNNNGG 1 cut(s) 1037
BseMI GCAATG 1 cut(s) 984
BseMII CTCAG 2 cut(s) 1077, 1097
BseNI ACTGG 4 cut(s) 193, 310, 400, 798
BseRI GAGGAG 1 cut(s) 1053
BseSI GKGCMC 1 cut(s) 945
BseXI GCAGC 3 cut(s) 151, 171, 688
BshFI GGCC 5 cut(s) 50, 108, 192, 464, 644
BshNI GGYRCC 1 cut(s) 520
BsiHKAI GWGCWC 2 cut(s) 801, 945
BsiSI CCGG 1 cut(s) 563
BslI CCNNNNNNNGG 1 cut(s) 1037
BsmAI GTCTC 2 cut(s) 20, 1013
BsnI GGCC 5 cut(s) 50, 108, 192, 464, 644
Bsp1286I GDGCHC 3 cut(s) 620, 801, 945
Bsp143I GATC 9 cut(s) 67, 262, 296, 321, 385, 567, 744, 862, 1003
BspACI CCGC 4 cut(s) 35, 137, 852, 1013
BspANI GGCC 5 cut(s) 50, 108, 192, 464, 644
BspCNI CTCAG 2 cut(s) 1076, 1096
BspHI TCATGA 2 cut(s) 70, 268
BspLI GGNNCC 2 cut(s) 522, 1042
BspMAI CTGCAG 1 cut(s) 189
BspMI ACCTGC 1 cut(s) 505
BspPI GGATC 1 cut(s) 304
BspT107I GGYRCC 1 cut(s) 520
BsrDI GCAATG 1 cut(s) 984
BsrI ACTGG 4 cut(s) 193, 310, 400, 798
BssECI CCNNGG 4 cut(s) 21, 45, 886, 948
BssMI GATC 9 cut(s) 67, 262, 296, 321, 385, 567, 744, 862, 1003
BssNI GRCGYC 2 cut(s) 492, 1077
BssSI CACGAG 1 cut(s) 203
BssT1I CCWWGG 4 cut(s) 21, 45, 886, 948
Bst2BI CACGAG 1 cut(s) 203
Bst2UI CCWGG 1 cut(s) 823
Bst4CI ACNGT 3 cut(s) 147, 155, 1049
Bst6I CTCTTC 1 cut(s) 237
BstACI GRCGYC 2 cut(s) 492, 1077
BstAPI GCANNNNNTGC 1 cut(s) 520
BstBAI YACGTR 1 cut(s) 980
BstC8I GCNNGC 2 cut(s) 106, 850
BstDEI CTNAG 3 cut(s) 1063, 1083, 1140
BstENI CCTNNNNNAGG 1 cut(s) 1035
BstF5I GGATG 2 cut(s) 537, 576
BstHHI GCGC 1 cut(s) 881
BstKTI GATC 9 cut(s) 70, 265, 299, 324, 388, 570, 747, 865, 1006
BstMAI GTCTC 2 cut(s) 20, 1013
BstMBI GATC 9 cut(s) 67, 262, 296, 321, 385, 567, 744, 862, 1003
BstMWI GCNNNNNNNGC 3 cut(s) 105, 483, 520
BstNI CCWGG 1 cut(s) 823
BstNSI RCATGY 1 cut(s) 696
BstSCI CCNGG 2 cut(s) 561, 821
BstSFI CTRYAG 1 cut(s) 185
BstSLI GKGCMC 1 cut(s) 945
BstV1I GCAGC 3 cut(s) 151, 171, 688
BstV2I GAAGAC 1 cut(s) 670
BsuI GTATCC 2 cut(s) 320, 712
BsuRI GGCC 5 cut(s) 50, 108, 192, 464, 644
BtsCI GGATG 2 cut(s) 537, 576
BtsI GCAGTG 1 cut(s) 99
BtsIMutI CAGTG 2 cut(s) 12, 99
BveI ACCTGC 1 cut(s) 505
Cac8I GCNNGC 2 cut(s) 106, 850
CciI TCATGA 2 cut(s) 70, 268
CfoI GCGC 1 cut(s) 881
Cfr13I GGNCC 3 cut(s) 190, 643, 763
CseI GACGC 2 cut(s) 500, 1085
Csp6I GTAC 1 cut(s) 93
CviAII CATG 7 cut(s) 71, 110, 269, 358, 487, 640, 693
CviQI GTAC 1 cut(s) 93
DdeI CTNAG 3 cut(s) 1063, 1083, 1140
DpnI GATC 9 cut(s) 69, 264, 298, 323, 387, 569, 746, 864, 1005
DpnII GATC 9 cut(s) 67, 262, 296, 321, 385, 567, 744, 862, 1003
DraI TTTAAA 1 cut(s) 1117
EaeI YGGCCR 2 cut(s) 106, 462
Eam1104I CTCTTC 1 cut(s) 237
EarI CTCTTC 1 cut(s) 237
EciI GGCGGA 1 cut(s) 1002
Eco130I CCWWGG 4 cut(s) 21, 45, 886, 948
Eco24I GRGCYC 1 cut(s) 620
Eco47I GGWCC 1 cut(s) 763
Eco57I CTGAAG 1 cut(s) 659
Eco72I CACGTG 1 cut(s) 980
EcoNI CCTNNNNNAGG 1 cut(s) 1035
EcoRII CCWGG 1 cut(s) 821
EcoT14I CCWWGG 4 cut(s) 21, 45, 886, 948
EcoT38I GRGCYC 1 cut(s) 620
ErhI CCWWGG 4 cut(s) 21, 45, 886, 948
FaeI CATG 7 cut(s) 74, 113, 272, 361, 490, 643, 696
FalI AAGNNNNNCTT 4 cut(s) 249, 281, 335, 367
FatI CATG 7 cut(s) 70, 109, 268, 357, 486, 639, 692
FauI CCCGC 1 cut(s) 845
FbaI TGATCA 3 cut(s) 385, 862, 1003
FblI GTMKAC 2 cut(s) 114, 1074
Fnu4HI GCNGC 4 cut(s) 137, 140, 185, 702
FokI GGATG 2 cut(s) 524, 563
FriOI GRGCYC 1 cut(s) 620
Fsp4HI GCNGC 4 cut(s) 137, 140, 185, 702
FspBI CTAG 3 cut(s) 96, 225, 1070
GlaI GCGC 1 cut(s) 880
GluI GCNGC 4 cut(s) 137, 140, 185, 702
HaeIII GGCC 5 cut(s) 50, 108, 192, 464, 644
HapII CCGG 1 cut(s) 563
HgaI GACGC 2 cut(s) 500, 1085
HhaI GCGC 1 cut(s) 881
Hin1I GRCGYC 2 cut(s) 492, 1077
Hin1II CATG 7 cut(s) 74, 113, 272, 361, 490, 643, 696
Hin6I GCGC 1 cut(s) 879
HinP1I GCGC 1 cut(s) 879
HincII GTYRAC 4 cut(s) 15, 115, 448, 1075
HindII GTYRAC 4 cut(s) 15, 115, 448, 1075
HindIII AAGCTT 1 cut(s) 634
HinfI GANTC 5 cut(s) 479, 650, 923, 965, 1021
HpaII CCGG 1 cut(s) 563
HphI GGTGA 2 cut(s) 143, 964
Hpy166II GTNNAC 5 cut(s) 15, 115, 448, 943, 1075
Hpy188I TCNGA 6 cut(s) 61, 321, 470, 678, 803, 1086
Hpy188III TCNNGA 2 cut(s) 71, 269
Hpy8I GTNNAC 5 cut(s) 15, 115, 448, 943, 1075
Hpy99I CGWCG 3 cut(s) 119, 470, 1079
HpyAV CCTTC 7 cut(s) 66, 114, 242, 372, 683, 881, 943
HpyCH4III ACNGT 3 cut(s) 147, 155, 1049
HpyCH4IV ACGT 1 cut(s) 979
HpyCH4V TGCA 4 cut(s) 187, 210, 704, 943
HpyF10VI GCNNNNNNNGC 3 cut(s) 105, 483, 520
HpyF3I CTNAG 3 cut(s) 1063, 1083, 1140
HpySE526I ACGT 1 cut(s) 979
Hsp92I GRCGYC 2 cut(s) 492, 1077
Hsp92II CATG 7 cut(s) 74, 113, 272, 361, 490, 643, 696
HspAI GCGC 1 cut(s) 879
Ksp22I TGATCA 3 cut(s) 385, 862, 1003
Kzo9I GATC 9 cut(s) 67, 262, 296, 321, 385, 567, 744, 862, 1003
LmnI GCTCC 3 cut(s) 675, 845, 1040
Lsp1109I GCAGC 3 cut(s) 151, 171, 688
MaeI CTAG 3 cut(s) 96, 225, 1070
MaeII ACGT 1 cut(s) 979
MaeIII GTNAC 1 cut(s) 347
MalI GATC 9 cut(s) 69, 264, 298, 323, 387, 569, 746, 864, 1005
MboI GATC 9 cut(s) 67, 262, 296, 321, 385, 567, 744, 862, 1003
MfeI CAATTG 1 cut(s) 288
MhlI GDGCHC 3 cut(s) 620, 801, 945
MlsI TGGCCA 1 cut(s) 108
MluCI AATT 4 cut(s) 288, 315, 817, 827
MluNI TGGCCA 1 cut(s) 108
MlyI GAGTC 4 cut(s) 488, 917, 959, 1015
MmeI TCCRAC 1 cut(s) 448
MnlI CCTC 8 cut(s) 61, 238, 265, 287, 414, 551, 1031, 1090
Mox20I TGGCCA 1 cut(s) 108
MscI TGGCCA 1 cut(s) 108
MseI TTAA 4 cut(s) 497, 900, 960, 1116
MslI CAYNNNNRTG 2 cut(s) 156, 1108
Msp20I TGGCCA 1 cut(s) 108
MspA1I CMGCKG 1 cut(s) 184
MspI CCGG 1 cut(s) 563
MspR9I CCNGG 2 cut(s) 563, 823
MunI CAATTG 1 cut(s) 288
MvaI CCWGG 1 cut(s) 823
MwoI GCNNNNNNNGC 3 cut(s) 105, 483, 520
NciI CCSGG 1 cut(s) 563
NdeII GATC 9 cut(s) 67, 262, 296, 321, 385, 567, 744, 862, 1003
NlaIII CATG 7 cut(s) 74, 113, 272, 361, 490, 643, 696
NlaIV GGNNCC 2 cut(s) 522, 1042
NmeAIII GCCGAG 1 cut(s) 677
NspI RCATGY 1 cut(s) 696
PagI TCATGA 2 cut(s) 70, 268
PaqCI CACCTGC 1 cut(s) 505
PcsI WCGNNNNNNNCGW 1 cut(s) 474
PfeI GAWTC 1 cut(s) 650
PfoI TCCNGGA 2 cut(s) 561, 821
PkrI GCNGC 4 cut(s) 138, 141, 186, 703
PleI GAGTC 4 cut(s) 487, 917, 959, 1015
PmaCI CACGTG 1 cut(s) 980
PmlI CACGTG 1 cut(s) 980
PpsI GAGTC 4 cut(s) 487, 917, 959, 1015
Ppu21I YACGTR 1 cut(s) 980
PshBI ATTAAT 2 cut(s) 900, 960
Psp6I CCWGG 1 cut(s) 821
PspCI CACGTG 1 cut(s) 980
PspGI CCWGG 1 cut(s) 821
PspN4I GGNNCC 2 cut(s) 522, 1042
PspPI GGNCC 3 cut(s) 190, 643, 763
PstI CTGCAG 1 cut(s) 189
PvuII CAGCTG 1 cut(s) 184
RsaI GTAC 1 cut(s) 94
RsaNI GTAC 1 cut(s) 93
RseI CAYNNNNRTG 2 cut(s) 156, 1108
SalI GTCGAC 2 cut(s) 113, 1073
SaqAI TTAA 4 cut(s) 497, 900, 960, 1116
SatI GCNGC 4 cut(s) 137, 140, 185, 702
Sau3AI GATC 9 cut(s) 67, 262, 296, 321, 385, 567, 744, 862, 1003
Sau96I GGNCC 3 cut(s) 190, 643, 763
ScaI AGTACT 1 cut(s) 94
SchI GAGTC 4 cut(s) 488, 917, 959, 1015
ScrFI CCNGG 2 cut(s) 563, 823
SduI GDGCHC 3 cut(s) 620, 801, 945
SfcI CTRYAG 1 cut(s) 185
SinI GGWCC 1 cut(s) 763
SmiMI CAYNNNNRTG 2 cut(s) 156, 1108
SmlI CTYRAG 1 cut(s) 217
SmoI CTYRAG 1 cut(s) 217
SpeI ACTAGT 1 cut(s) 224
Sse9I AATT 4 cut(s) 288, 315, 817, 827
SsiI CCGC 4 cut(s) 35, 137, 852, 1013
SspMI CTAG 3 cut(s) 96, 225, 1070
StyD4I CCNGG 2 cut(s) 561, 821
StyI CCWWGG 4 cut(s) 21, 45, 886, 948
TaaI ACNGT 3 cut(s) 147, 155, 1049
TaiI ACGT 1 cut(s) 982
TaqI TCGA 2 cut(s) 114, 1074
TasI AATT 4 cut(s) 288, 315, 817, 827
TatI WGTACW 1 cut(s) 92
TauI GCSGC 1 cut(s) 139
TfiI GAWTC 1 cut(s) 650
Tru1I TTAA 4 cut(s) 497, 900, 960, 1116
Tru9I TTAA 4 cut(s) 497, 900, 960, 1116
TscAI CASTG 2 cut(s) 12, 106
TseI GCWGC 3 cut(s) 139, 184, 701
TspDTI ATGAA 7 cut(s) 90, 180, 257, 405, 628, 1092, 1107
TspGWI ACGGA 1 cut(s) 132
TspRI CASTG 2 cut(s) 12, 106
VneI GTGCAC 1 cut(s) 941
VpaK11BI GGWCC 1 cut(s) 763
VspI ATTAAT 2 cut(s) 900, 960
XagI CCTNNNNNAGG 1 cut(s) 1035
XceI RCATGY 1 cut(s) 696
XmiI GTMKAC 2 cut(s) 114, 1074
XspI CTAG 3 cut(s) 96, 225, 1070
ZrmI AGTACT 1 cut(s) 94
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.