RLG00000030863

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_laevigata
Chr7
OG0012091
Physical Location & Seq
Reverse (-)
280452 .. 282237
1786 bp
Loading structure...
UTR
Exon/CDS
Intron
RLM00000030863

Sequence Viewer

Length: 1074 bp
ATGTCAGTGTGGTTGACGACGAAGGAGACCGGGGCGGCCTTGCCCTTGCCCTTGCACTCAGAAGTAGATCATGATGAAATTTATCGAACGAGGAGCACTACTGGCCATGAAGGAAGTGAATACCGCCAGCCGCAGCAACAGTACCACCGTGATGAAGATGAGTACCAGCTGCAAGGCCAGTTTCAGCACGAGTGCAATATCTCAAGGAATAGCGTATGGGAGATAGAAGAGGAAGAAGAAGAAGATGATCATGACGGTTTGAATTATTCAATTGGAGGATCAAATACTCGTATCCCAATTGAGATCAAAGAGCTTTTCGGGGCGAAGCGCTACTTTCCCATGCCTTCCATTAAGGAAGAACAATATGATCATATTGATGGTCTGCCTCATTCTTCTTCATCGTCTGACATTGTTGACTGCGTTTATGTGGCCGTCGGAAAGAGCGAGTCAAGCATGGACGCCTTAAACTACGCCGTCAAGCATCTGGTGCTGTCATCCAACACTATCCTCTATCTCATACACATTTTCCCAGAGATCAAGTACATCCCAAGTCCATTAGGAAAACTTCCAAAAAGTCGAGTGATCCCAGAACAAGTGGAAAGTTTCATGGCTCAAGAATCAGACAAGAGAAGACAGCTCCTTCAGAAGTATATTGATAAATGCTCGGCTGCAAAGGTTAAGATGGATACTCTGCTGATTGAAAGTGATATGATCGCCAAGGCTATTGTGGACCTTATCCCTATTCTCAACATAAGAAAACTGGTGCTTGGAACGAACAAATCTAATTTGAGGAAATTGATGTCCGGGAAAGGAGCAAGGGGAATAGCTGATCAAGTCCTTCAAAGTGCACCCCAAGGTTGTGAGATTAATATCATTTGTGAAGGAAATCAAGTGATGATTAATGAGTCGCTTTCCCCACATGGCATTGCCAATGATCACATTGCACCAAATACAGGAGGAGGCAATGATGATAACCCTAACTCTATCCTAGACCGCGATCAGAGGAATGAAGCCTGCGATCAGAGGAATGAAGCCTGTTCATTCCTGTGTTTTAAACCTATGTTTTCCCAATAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

358

Amino Acids

40.19

Weight (kDa)

5.1

Isoelectric Point (pI)

63.88

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47740 AT5G47740
fragaria_vesca FvH4_3g00270 FvH4_3g00270 FvH4_3g00270
malus_domestica MD05G1362400.v1.1
prunus_persica Prupe.4G003000_v2.0.a1
pyrus_communis pycom05g32880
rosa_chinensis RchiOBHm_Chr5g0000401
rosa_laevigata RLG00000030863
rosa_multiflora Rmu_sc0017532.1_g000001 Rmu_ssc0000181.1_g000001
rosa_roxburghii Rroxscaffold_1G00075760
rosa_rugosa Rorug04G0383300
rosa_samantha Rh5AG003100 Rh5BG004300 Rh5CG003300 Rh5DG003300
rosa_wichuraiana Rw5G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccII CGCG 1 cut(s) 996
AciI CCGC 4 cut(s) 35, 124, 131, 994
AclWI GGATC 2 cut(s) 286, 577
AcoI YGGCCR 2 cut(s) 103, 429
AcsI RAATTY 1 cut(s) 78
AcuI CTGAAG 1 cut(s) 626
AcyI GRCGYC 1 cut(s) 459
AfaI GTAC 3 cut(s) 143, 164, 542
AfeI AGCGCT 1 cut(s) 329
AfiI CCNNNNNNNGG 1 cut(s) 953
AgsI TTSAA 4 cut(s) 262, 270, 701, 842
AluBI AGCT 4 cut(s) 169, 313, 637, 827
AluI AGCT 4 cut(s) 169, 313, 637, 827
Alw21I GWGCWC 2 cut(s) 98, 850
Alw26I GTCTC 1 cut(s) 20
Alw44I GTGCAC 1 cut(s) 846
AlwI GGATC 2 cut(s) 286, 577
Aor51HI AGCGCT 1 cut(s) 329
AoxI GGCC 4 cut(s) 36, 103, 175, 429
ApaLI GTGCAC 1 cut(s) 846
ApeKI GCWGC 3 cut(s) 133, 169, 668
ApoI RAATTY 1 cut(s) 78
AseI ATTAAT 2 cut(s) 867, 900
AspLEI GCGC 1 cut(s) 330
AspS9I GGNCC 1 cut(s) 730
AsuC2I CCSGG 2 cut(s) 31, 805
AvaII GGWCC 1 cut(s) 730
BaeGI GKGCMC 1 cut(s) 850
BalI TGGCCA 1 cut(s) 105
BauI CACGAG 1 cut(s) 188
BbsI GAAGAC 1 cut(s) 637
Bbv12I GWGCWC 2 cut(s) 98, 850
BbvI GCAGC 3 cut(s) 145, 156, 655
BccI CCATC 2 cut(s) 371, 676
BceAI ACGGC 2 cut(s) 416, 458
BciVI GTATCC 2 cut(s) 302, 679
BclI TGATCA 4 cut(s) 247, 367, 829, 934
BcnI CCSGG 2 cut(s) 31, 805
BcoDI GTCTC 1 cut(s) 20
BfaI CTAG 1 cut(s) 989
BfoI RGCGCY 1 cut(s) 331
BfuI GTATCC 2 cut(s) 302, 679
BisI GCNGC 5 cut(s) 36, 131, 134, 170, 669
BlsI GCNGC 5 cut(s) 37, 132, 135, 171, 670
Bme1390I CCNGG 2 cut(s) 31, 805
Bme18I GGWCC 1 cut(s) 730
BmgT120I GGNCC 1 cut(s) 730
BmrFI CCNGG 2 cut(s) 31, 805
BmsI GCATC 1 cut(s) 490
BpiI GAAGAC 1 cut(s) 637
BpuEI CTTGAG 2 cut(s) 187, 597
BpuMI CCSGG 2 cut(s) 31, 805
BsaBI GATNNNNATC 1 cut(s) 869
BsaHI GRCGYC 1 cut(s) 459
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 3 cut(s) 30, 717, 853
Bsc4I CCNNNNNNNGG 1 cut(s) 953
Bse1I ACTGG 3 cut(s) 106, 178, 765
Bse3DI GCAATG 3 cut(s) 924, 939, 970
Bse8I GATNNNNATC 1 cut(s) 869
BseDI CCNNGG 3 cut(s) 30, 717, 853
BseGI GGATG 2 cut(s) 494, 543
BseJI GATNNNNATC 1 cut(s) 869
BseLI CCNNNNNNNGG 1 cut(s) 953
BseMI GCAATG 3 cut(s) 924, 939, 970
BseMII CTCAG 1 cut(s) 72
BseNI ACTGG 3 cut(s) 106, 178, 765
BseRI GAGGAG 2 cut(s) 106, 972
BseSI GKGCMC 1 cut(s) 850
BseXI GCAGC 3 cut(s) 145, 156, 655
Bsh1236I CGCG 1 cut(s) 996
BshFI GGCC 4 cut(s) 38, 105, 177, 431
BsiHKAI GWGCWC 2 cut(s) 98, 850
BsiSI CCGG 2 cut(s) 30, 804
BslI CCNNNNNNNGG 1 cut(s) 953
BsmAI GTCTC 1 cut(s) 20
BsnI GGCC 4 cut(s) 38, 105, 177, 431
Bso31I GGTCTC 1 cut(s) 20
Bsp1286I GDGCHC 2 cut(s) 98, 850
BspACI CCGC 4 cut(s) 35, 124, 131, 994
BspANI GGCC 4 cut(s) 38, 105, 177, 431
BspCNI CTCAG 1 cut(s) 71
BspFNI CGCG 1 cut(s) 996
BspHI TCATGA 2 cut(s) 70, 250
BspPI GGATC 2 cut(s) 286, 577
BspTNI GGTCTC 1 cut(s) 20
BsrDI GCAATG 3 cut(s) 924, 939, 970
BsrI ACTGG 3 cut(s) 106, 178, 765
BssECI CCNNGG 3 cut(s) 30, 717, 853
BssNI GRCGYC 1 cut(s) 459
BssSI CACGAG 1 cut(s) 188
BssT1I CCWWGG 2 cut(s) 717, 853
Bst2BI CACGAG 1 cut(s) 188
Bst4CI ACNGT 3 cut(s) 141, 149, 257
Bst6I CTCTTC 1 cut(s) 222
BstACI GRCGYC 1 cut(s) 459
BstAPI GCANNNNNTGC 1 cut(s) 487
BstC8I GCNNGC 2 cut(s) 128, 1015
BstDEI CTNAG 1 cut(s) 58
BstF5I GGATG 2 cut(s) 494, 543
BstFNI CGCG 1 cut(s) 996
BstH2I RGCGCY 1 cut(s) 331
BstHHI GCGC 1 cut(s) 330
BstMAI GTCTC 1 cut(s) 20
BstMWI GCNNNNNNNGC 3 cut(s) 102, 450, 487
BstSCI CCNGG 2 cut(s) 29, 803
BstSLI GKGCMC 1 cut(s) 850
BstUI CGCG 1 cut(s) 996
BstV1I GCAGC 3 cut(s) 145, 156, 655
BstV2I GAAGAC 1 cut(s) 637
BsuI GTATCC 2 cut(s) 302, 679
BsuRI GGCC 4 cut(s) 38, 105, 177, 431
BtsCI GGATG 2 cut(s) 494, 543
BtsIMutI CAGTG 1 cut(s) 12
Cac8I GCNNGC 2 cut(s) 128, 1015
CciI TCATGA 2 cut(s) 70, 250
CfoI GCGC 1 cut(s) 330
Cfr13I GGNCC 1 cut(s) 730
CseI GACGC 1 cut(s) 467
Csp6I GTAC 3 cut(s) 142, 163, 541
CviAII CATG 7 cut(s) 71, 107, 251, 340, 454, 607, 920
CviQI GTAC 3 cut(s) 142, 163, 541
DdeI CTNAG 1 cut(s) 58
DraI TTTAAA 1 cut(s) 1054
EaeI YGGCCR 2 cut(s) 103, 429
Eam1104I CTCTTC 1 cut(s) 222
EarI CTCTTC 1 cut(s) 222
Eco130I CCWWGG 2 cut(s) 717, 853
Eco31I GGTCTC 1 cut(s) 20
Eco47I GGWCC 1 cut(s) 730
Eco47III AGCGCT 1 cut(s) 329
Eco57I CTGAAG 1 cut(s) 626
EcoT14I CCWWGG 2 cut(s) 717, 853
ErhI CCWWGG 2 cut(s) 717, 853
FaeI CATG 7 cut(s) 74, 110, 254, 343, 457, 610, 923
FalI AAGNNNNNCTT 2 cut(s) 317, 349
FatI CATG 7 cut(s) 70, 106, 250, 339, 453, 606, 919
FbaI TGATCA 4 cut(s) 247, 367, 829, 934
Fnu4HI GCNGC 5 cut(s) 36, 131, 134, 170, 669
FokI GGATG 2 cut(s) 481, 530
Fsp4HI GCNGC 5 cut(s) 36, 131, 134, 170, 669
FspBI CTAG 1 cut(s) 989
GlaI GCGC 1 cut(s) 329
GluI GCNGC 5 cut(s) 36, 131, 134, 170, 669
HaeII RGCGCY 1 cut(s) 331
HaeIII GGCC 4 cut(s) 38, 105, 177, 431
HapII CCGG 2 cut(s) 30, 804
HgaI GACGC 1 cut(s) 467
HhaI GCGC 1 cut(s) 330
Hin1I GRCGYC 1 cut(s) 459
Hin1II CATG 7 cut(s) 74, 110, 254, 343, 457, 610, 923
Hin6I GCGC 1 cut(s) 328
HinP1I GCGC 1 cut(s) 328
HincII GTYRAC 2 cut(s) 15, 415
HindII GTYRAC 2 cut(s) 15, 415
HinfI GANTC 3 cut(s) 446, 617, 905
HpaII CCGG 2 cut(s) 30, 804
Hpy166II GTNNAC 4 cut(s) 15, 415, 730, 848
Hpy188I TCNGA 7 cut(s) 61, 406, 437, 622, 645, 1002, 1023
Hpy188III TCNNGA 3 cut(s) 71, 251, 614
Hpy8I GTNNAC 4 cut(s) 15, 415, 730, 848
Hpy99I CGWCG 2 cut(s) 22, 437
HpyAV CCTTC 6 cut(s) 16, 104, 354, 650, 848, 875
HpyCH4III ACNGT 3 cut(s) 141, 149, 257
HpyCH4V TGCA 6 cut(s) 55, 172, 195, 671, 848, 944
HpyF10VI GCNNNNNNNGC 3 cut(s) 102, 450, 487
HpyF3I CTNAG 1 cut(s) 58
Hsp92I GRCGYC 1 cut(s) 459
Hsp92II CATG 7 cut(s) 74, 110, 254, 343, 457, 610, 923
HspAI GCGC 1 cut(s) 328
Ksp22I TGATCA 4 cut(s) 247, 367, 829, 934
LmnI GCTCC 3 cut(s) 93, 642, 812
Lsp1109I GCAGC 3 cut(s) 145, 156, 655
LweI GCATC 1 cut(s) 490
MaeI CTAG 1 cut(s) 989
MfeI CAATTG 2 cut(s) 270, 297
MhlI GDGCHC 2 cut(s) 98, 850
MlsI TGGCCA 1 cut(s) 105
MluCI AATT 6 cut(s) 78, 262, 270, 297, 784, 794
MluNI TGGCCA 1 cut(s) 105
MlyI GAGTC 2 cut(s) 455, 914
MmeI TCCRAC 2 cut(s) 415, 522
Mox20I TGGCCA 1 cut(s) 105
MscI TGGCCA 1 cut(s) 105
MseI TTAA 6 cut(s) 351, 464, 678, 867, 900, 1053
MslI CAYNNNNRTG 3 cut(s) 150, 375, 1045
Msp20I TGGCCA 1 cut(s) 105
MspA1I CMGCKG 1 cut(s) 169
MspI CCGG 2 cut(s) 30, 804
MspR9I CCNGG 2 cut(s) 31, 805
MunI CAATTG 2 cut(s) 270, 297
MvnI CGCG 1 cut(s) 996
MwoI GCNNNNNNNGC 3 cut(s) 102, 450, 487
NciI CCSGG 2 cut(s) 31, 805
NlaIII CATG 7 cut(s) 74, 110, 254, 343, 457, 610, 923
NmeAIII GCCGAG 1 cut(s) 644
PagI TCATGA 2 cut(s) 70, 250
PcsI WCGNNNNNNNCGW 1 cut(s) 441
PfeI GAWTC 1 cut(s) 617
PfoI TCCNGGA 1 cut(s) 803
PkrI GCNGC 5 cut(s) 37, 132, 135, 171, 670
PleI GAGTC 2 cut(s) 454, 913
PpsI GAGTC 2 cut(s) 454, 913
PshBI ATTAAT 2 cut(s) 867, 900
PspPI GGNCC 1 cut(s) 730
PvuII CAGCTG 1 cut(s) 169
RsaI GTAC 3 cut(s) 143, 164, 542
RsaNI GTAC 3 cut(s) 142, 163, 541
RseI CAYNNNNRTG 3 cut(s) 150, 375, 1045
SaqAI TTAA 6 cut(s) 351, 464, 678, 867, 900, 1053
SatI GCNGC 5 cut(s) 36, 131, 134, 170, 669
Sau96I GGNCC 1 cut(s) 730
SchI GAGTC 2 cut(s) 455, 914
ScrFI CCNGG 2 cut(s) 31, 805
SduI GDGCHC 2 cut(s) 98, 850
SetI ASST 8 cut(s) 171, 315, 639, 678, 735, 829, 859, 1060
SfaNI GCATC 1 cut(s) 490
SinI GGWCC 1 cut(s) 730
SmiMI CAYNNNNRTG 3 cut(s) 150, 375, 1045
SmlI CTYRAG 2 cut(s) 202, 612
SmoI CTYRAG 2 cut(s) 202, 612
Sse9I AATT 6 cut(s) 78, 262, 270, 297, 784, 794
SsiI CCGC 4 cut(s) 35, 124, 131, 994
SspMI CTAG 1 cut(s) 989
StyD4I CCNGG 2 cut(s) 29, 803
StyI CCWWGG 2 cut(s) 717, 853
TaaI ACNGT 3 cut(s) 141, 149, 257
TaqI TCGA 2 cut(s) 85, 577
TasI AATT 6 cut(s) 78, 262, 270, 297, 784, 794
TatI WGTACW 1 cut(s) 540
TauI GCSGC 2 cut(s) 38, 133
TfiI GAWTC 1 cut(s) 617
Tru1I TTAA 6 cut(s) 351, 464, 678, 867, 900, 1053
Tru9I TTAA 6 cut(s) 351, 464, 678, 867, 900, 1053
TscAI CASTG 1 cut(s) 12
TseI GCWGC 3 cut(s) 133, 169, 668
TspDTI ATGAA 8 cut(s) 90, 123, 168, 387, 595, 1023, 1029, 1044
TspRI CASTG 1 cut(s) 12
VneI GTGCAC 1 cut(s) 846
VpaK11BI GGWCC 1 cut(s) 730
VspI ATTAAT 2 cut(s) 867, 900
XapI RAATTY 1 cut(s) 78
XcmI CCANNNNNNNNNTGG 1 cut(s) 724
XspI CTAG 1 cut(s) 989
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.