Rmu_sc0017532.1_g000001

U-box domain-containing protein

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_multiflora
Rmu_sc0017532.1
OG0012091
Physical Location & Seq
Forward (+)
26 .. 592
567 bp
Loading structure...
UTR
Exon/CDS
Intron
Rmu_sc0017532.1_g000001.1.cds

Sequence Viewer

Length: 567 bp
atgtcagtgtggttgacgacgaaggagaccggggcggccttgcccttgcactcagaaatagatcatgatgaaattcgtcggacgaggagcaccactggccatgaaggaagcgaataccgtcagccgcagcaacagtaccaccgtgatgaagatgagtaccagctgcaaggccagtttcagcacgagtgcaatatctcaaggaatagtgtatgggagatagaagaggaagaagaagaagatgatcatgagggtttgaattattcaattggaggatcaaatactagtatcccaattgagatcaaagagcttttcggggcgaagcgctactttcccatgccttccatcaaggaagaacaatatgatattaatggtctgcctcattcttcttcatcgtctgacattgttgactgcgtttatgtggccgttggaaagagcgagtcaagcatggacgccttaaactacgccgtcaagcagctgctgctgtcatccaacactatcctctatctcatacacattttccctgagatcaagtacatcccaagtccatgtaagtttcttagtccatga
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
Usp

Protein Analysis

188

Amino Acids

21.53

Weight (kDa)

4.73

Isoelectric Point (pI)

78.39

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012091)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47740 AT5G47740
fragaria_vesca FvH4_3g00270 FvH4_3g00270 FvH4_3g00270
malus_domestica MD05G1362400.v1.1
prunus_persica Prupe.4G003000_v2.0.a1
pyrus_communis pycom05g32880
rosa_chinensis RchiOBHm_Chr5g0000401
rosa_laevigata RLG00000030863
rosa_multiflora Rmu_sc0017532.1_g000001 Rmu_ssc0000181.1_g000001
rosa_roxburghii Rroxscaffold_1G00075760
rosa_rugosa Rorug04G0383300
rosa_samantha Rh5AG003100 Rh5BG004300 Rh5CG003300 Rh5DG003300
rosa_wichuraiana Rw5G000320

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 2 cut(s) 35, 125
AclWI GGATC 1 cut(s) 280
AcoI YGGCCR 2 cut(s) 97, 420
AcsI RAATTY 1 cut(s) 72
AcyI GRCGYC 1 cut(s) 450
AfaI GTAC 3 cut(s) 137, 158, 533
AfeI AGCGCT 1 cut(s) 323
AgsI TTSAA 2 cut(s) 256, 264
AhlI ACTAGT 1 cut(s) 281
AluBI AGCT 3 cut(s) 163, 307, 475
AluI AGCT 3 cut(s) 163, 307, 475
Alw21I GWGCWC 1 cut(s) 92
Alw26I GTCTC 1 cut(s) 20
AlwI GGATC 1 cut(s) 280
AlwNI CAGNNNCTG 1 cut(s) 478
Aor51HI AGCGCT 1 cut(s) 323
AoxI GGCC 4 cut(s) 36, 97, 169, 420
ApeKI GCWGC 5 cut(s) 127, 163, 472, 475, 478
ApoI RAATTY 1 cut(s) 72
AseI ATTAAT 1 cut(s) 366
AspLEI GCGC 1 cut(s) 324
AsuC2I CCSGG 1 cut(s) 31
BalI TGGCCA 1 cut(s) 99
BauI CACGAG 1 cut(s) 182
Bbv12I GWGCWC 1 cut(s) 92
BbvI GCAGC 5 cut(s) 139, 150, 462, 465, 484
BccI CCATC 1 cut(s) 350
BceAI ACGGC 2 cut(s) 407, 449
BciVI GTATCC 1 cut(s) 296
BclI TGATCA 1 cut(s) 241
BcnI CCSGG 1 cut(s) 31
BcoDI GTCTC 1 cut(s) 20
BcuI ACTAGT 1 cut(s) 281
BfaI CTAG 1 cut(s) 282
BfoI RGCGCY 1 cut(s) 325
BfuI GTATCC 1 cut(s) 296
BisI GCNGC 7 cut(s) 36, 125, 128, 164, 473, 476, 479
BlsI GCNGC 7 cut(s) 37, 126, 129, 165, 474, 477, 480
Bme1390I CCNGG 1 cut(s) 31
BmrFI CCNGG 1 cut(s) 31
BpuEI CTTGAG 1 cut(s) 181
BpuMI CCSGG 1 cut(s) 31
BsaHI GRCGYC 1 cut(s) 450
BsaI GGTCTC 1 cut(s) 20
BsaJI CCNNGG 1 cut(s) 30
Bse1I ACTGG 2 cut(s) 100, 172
BseDI CCNNGG 1 cut(s) 30
BseGI GGATG 2 cut(s) 485, 534
BseMII CTCAG 2 cut(s) 66, 513
BseNI ACTGG 2 cut(s) 100, 172
BseRI GAGGAG 1 cut(s) 100
BseXI GCAGC 5 cut(s) 139, 150, 462, 465, 484
BshFI GGCC 4 cut(s) 38, 99, 171, 422
BsiHKAI GWGCWC 1 cut(s) 92
BsiSI CCGG 1 cut(s) 30
BsmAI GTCTC 1 cut(s) 20
BsnI GGCC 4 cut(s) 38, 99, 171, 422
Bso31I GGTCTC 1 cut(s) 20
Bsp1286I GDGCHC 1 cut(s) 92
Bsp143I GATC 5 cut(s) 61, 241, 272, 297, 525
BspACI CCGC 2 cut(s) 35, 125
BspANI GGCC 4 cut(s) 38, 99, 171, 422
BspCNI CTCAG 2 cut(s) 65, 514
BspHI TCATGA 2 cut(s) 64, 244
BspPI GGATC 1 cut(s) 280
BspTNI GGTCTC 1 cut(s) 20
BsrI ACTGG 2 cut(s) 100, 172
BssECI CCNNGG 1 cut(s) 30
BssMI GATC 5 cut(s) 61, 241, 272, 297, 525
BssNI GRCGYC 1 cut(s) 450
BssSI CACGAG 1 cut(s) 182
Bst2BI CACGAG 1 cut(s) 182
Bst4CI ACNGT 3 cut(s) 119, 135, 143
Bst6I CTCTTC 1 cut(s) 216
BstACI GRCGYC 1 cut(s) 450
BstAPI GCANNNNNTGC 1 cut(s) 478
BstDEI CTNAG 3 cut(s) 52, 522, 557
BstF5I GGATG 2 cut(s) 485, 534
BstH2I RGCGCY 1 cut(s) 325
BstHHI GCGC 1 cut(s) 324
BstKTI GATC 5 cut(s) 64, 244, 275, 300, 528
BstMAI GTCTC 1 cut(s) 20
BstMBI GATC 5 cut(s) 61, 241, 272, 297, 525
BstMWI GCNNNNNNNGC 3 cut(s) 96, 441, 478
BstSCI CCNGG 1 cut(s) 29
BstV1I GCAGC 5 cut(s) 139, 150, 462, 465, 484
BsuI GTATCC 1 cut(s) 296
BsuRI GGCC 4 cut(s) 38, 99, 171, 422
BtsCI GGATG 2 cut(s) 485, 534
BtsIMutI CAGTG 2 cut(s) 12, 93
CaiI CAGNNNCTG 1 cut(s) 478
CciI TCATGA 2 cut(s) 64, 244
CfoI GCGC 1 cut(s) 324
CseI GACGC 1 cut(s) 458
Csp6I GTAC 3 cut(s) 136, 157, 532
CviAII CATG 7 cut(s) 65, 101, 245, 334, 445, 546, 564
CviJI RGCY 8 cut(s) 38, 99, 124, 163, 171, 307, 422, 475
CviKI_1 RGCY 8 cut(s) 38, 99, 124, 163, 171, 307, 422, 475
CviQI GTAC 3 cut(s) 136, 157, 532
DdeI CTNAG 3 cut(s) 52, 522, 557
DpnI GATC 5 cut(s) 63, 243, 274, 299, 527
DpnII GATC 5 cut(s) 61, 241, 272, 297, 525
EaeI YGGCCR 2 cut(s) 97, 420
Eam1104I CTCTTC 1 cut(s) 216
EarI CTCTTC 1 cut(s) 216
Eco31I GGTCTC 1 cut(s) 20
Eco47III AGCGCT 1 cut(s) 323
FaeI CATG 7 cut(s) 68, 104, 248, 337, 448, 549, 567
FalI AAGNNNNNCTT 2 cut(s) 311, 343
FatI CATG 7 cut(s) 64, 100, 244, 333, 444, 545, 563
FbaI TGATCA 1 cut(s) 241
Fnu4HI GCNGC 7 cut(s) 36, 125, 128, 164, 473, 476, 479
FokI GGATG 2 cut(s) 472, 521
Fsp4HI GCNGC 7 cut(s) 36, 125, 128, 164, 473, 476, 479
FspBI CTAG 1 cut(s) 282
GlaI GCGC 1 cut(s) 323
GluI GCNGC 7 cut(s) 36, 125, 128, 164, 473, 476, 479
HaeII RGCGCY 1 cut(s) 325
HaeIII GGCC 4 cut(s) 38, 99, 171, 422
HapII CCGG 1 cut(s) 30
HgaI GACGC 1 cut(s) 458
HhaI GCGC 1 cut(s) 324
Hin1I GRCGYC 1 cut(s) 450
Hin1II CATG 7 cut(s) 68, 104, 248, 337, 448, 549, 567
Hin6I GCGC 1 cut(s) 322
HinP1I GCGC 1 cut(s) 322
HincII GTYRAC 2 cut(s) 15, 406
HindII GTYRAC 2 cut(s) 15, 406
HinfI GANTC 1 cut(s) 437
HpaII CCGG 1 cut(s) 30
Hpy166II GTNNAC 2 cut(s) 15, 406
Hpy188I TCNGA 3 cut(s) 55, 81, 397
Hpy188III TCNNGA 2 cut(s) 65, 245
Hpy8I GTNNAC 2 cut(s) 15, 406
Hpy99I CGWCG 2 cut(s) 22, 81
HpyAV CCTTC 3 cut(s) 16, 98, 348
HpyCH4III ACNGT 3 cut(s) 119, 135, 143
HpyCH4V TGCA 3 cut(s) 49, 166, 189
HpyF10VI GCNNNNNNNGC 3 cut(s) 96, 441, 478
HpyF3I CTNAG 3 cut(s) 52, 522, 557
Hsp92I GRCGYC 1 cut(s) 450
Hsp92II CATG 7 cut(s) 68, 104, 248, 337, 448, 549, 567
HspAI GCGC 1 cut(s) 322
Ksp22I TGATCA 1 cut(s) 241
Kzo9I GATC 5 cut(s) 61, 241, 272, 297, 525
LmnI GCTCC 1 cut(s) 87
LpnPI CCDG 5 cut(s) 43, 81, 173, 185, 534
Lsp1109I GCAGC 5 cut(s) 139, 150, 462, 465, 484
MaeI CTAG 1 cut(s) 282
MalI GATC 5 cut(s) 63, 243, 274, 299, 527
MboI GATC 5 cut(s) 61, 241, 272, 297, 525
MboII GAAGA 9 cut(s) 161, 233, 239, 242, 245, 248, 362, 375, 378
MfeI CAATTG 2 cut(s) 264, 291
MhlI GDGCHC 1 cut(s) 92
MlsI TGGCCA 1 cut(s) 99
MluCI AATT 4 cut(s) 72, 256, 264, 291
MluNI TGGCCA 1 cut(s) 99
MlyI GAGTC 1 cut(s) 446
MmeI TCCRAC 3 cut(s) 59, 406, 513
MnlI CCTC 6 cut(s) 78, 217, 241, 263, 387, 509
Mox20I TGGCCA 1 cut(s) 99
MscI TGGCCA 1 cut(s) 99
MseI TTAA 2 cut(s) 366, 455
MslI CAYNNNNRTG 1 cut(s) 144
Msp20I TGGCCA 1 cut(s) 99
MspA1I CMGCKG 2 cut(s) 163, 475
MspI CCGG 1 cut(s) 30
MspR9I CCNGG 1 cut(s) 31
MunI CAATTG 2 cut(s) 264, 291
MwoI GCNNNNNNNGC 3 cut(s) 96, 441, 478
NciI CCSGG 1 cut(s) 31
NdeII GATC 5 cut(s) 61, 241, 272, 297, 525
NlaIII CATG 7 cut(s) 68, 104, 248, 337, 448, 549, 567
PagI TCATGA 2 cut(s) 64, 244
PkrI GCNGC 7 cut(s) 37, 126, 129, 165, 474, 477, 480
PleI GAGTC 1 cut(s) 445
PpsI GAGTC 1 cut(s) 445
PshBI ATTAAT 1 cut(s) 366
PstNI CAGNNNCTG 1 cut(s) 478
PvuII CAGCTG 2 cut(s) 163, 475
RsaI GTAC 3 cut(s) 137, 158, 533
RsaNI GTAC 3 cut(s) 136, 157, 532
RseI CAYNNNNRTG 1 cut(s) 144
SaqAI TTAA 2 cut(s) 366, 455
SatI GCNGC 7 cut(s) 36, 125, 128, 164, 473, 476, 479
Sau3AI GATC 5 cut(s) 61, 241, 272, 297, 525
SchI GAGTC 1 cut(s) 446
ScrFI CCNGG 1 cut(s) 31
SduI GDGCHC 1 cut(s) 92
SetI ASST 3 cut(s) 165, 309, 477
SmiMI CAYNNNNRTG 1 cut(s) 144
SmlI CTYRAG 1 cut(s) 196
SmoI CTYRAG 1 cut(s) 196
SpeI ACTAGT 1 cut(s) 281
Sse9I AATT 4 cut(s) 72, 256, 264, 291
SsiI CCGC 2 cut(s) 35, 125
SspMI CTAG 1 cut(s) 282
StyD4I CCNGG 1 cut(s) 29
TaaI ACNGT 3 cut(s) 119, 135, 143
TasI AATT 4 cut(s) 72, 256, 264, 291
TatI WGTACW 1 cut(s) 531
TauI GCSGC 2 cut(s) 38, 127
Tru1I TTAA 2 cut(s) 366, 455
Tru9I TTAA 2 cut(s) 366, 455
TscAI CASTG 2 cut(s) 12, 100
TseI GCWGC 5 cut(s) 127, 163, 472, 475, 478
TspDTI ATGAA 4 cut(s) 84, 117, 162, 378
TspRI CASTG 2 cut(s) 12, 100
VspI ATTAAT 1 cut(s) 366
XapI RAATTY 1 cut(s) 72
XspI CTAG 1 cut(s) 282
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.