AT5G47830

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
OG0010893
Physical Location & Seq
Reverse (-)
19372821 .. 19374693
1873 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G47830.2

Sequence Viewer

Length: 534 bp
ATGCATTACGCCATGAACAGTGATCCCGAGACGCAGATGATGGATGCCGACTCCACCGAAACGTTCATGCTCGACAAACCCAGCACCGCCAGAGATTTCCTCTCCGCCGCTCGTAGGCTCGTCGATCAAGGAGAACCATCTCAAGCTCTCCAAGCGGTCGTGATGGCGATGAGAAACCAAGGAGGAGATGAGGCGGTTCTTCAGATACTGAACCGTACCCGTGAACTATACAAGCGTAGAATTCAAGAAACAGCTAGTATGGATCAGCTGGCTTCTATATTTGCAGAGTGTGCCATTACAGAAGCACAGCCTCTTGCGCTTGATGAGCCTACAACGTCAAAAGACTTATTTGGTACCAAACAAACAGTTACAGCAGATGCTCATGGCATATCTATTCTGGAAAAAAGTGGGAGGTCACAGATCATGCTCGATGCCTTTGCTGACGGAAGCAGTTTTATCTGTCTGCAATGCGGTGGTCTGGTGAGCATCCATAGGAGAGATGAACACTATGCGTACTGGTGTAGCAATATGTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

177

Amino Acids

19.65

Weight (kDa)

4.83

Isoelectric Point (pI)

56.25

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2HC_3 PF25017 77 - 121 1.9e-25 C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Orthologous Genes (Group: OG0010893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47830 AT5G47830
fragaria_vesca FvH4_2g33950
malus_domestica MD06G1210300.v1.1 MD08G1095400.v1.1 MD15G1077900.v1.1 MD17G1062600.v1.1
prunus_persica Prupe.1G431400_v2.0.a1
pyrus_communis pycom15g07260
rosa_chinensis RchiOBHm_Chr6g0308461
rosa_laevigata RLG00000010641
rosa_multiflora Rmu_co8427491.1_g000001 Rmu_sc0011796.1_g000007
rosa_roxburghii Rroxscaffold_7G00160110
rosa_rugosa Rorug06G0367000
rosa_samantha Rh6AG476700 Rh6BG486900 Rh6CG492000 Rh6DG478100
rosa_wichuraiana Rw6G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc65I GGTACC 1 cut(s) 353
AccB1I GGYRCC 1 cut(s) 353
AccBSI CCGCTC 1 cut(s) 110
AciI CCGC 6 cut(s) 87, 105, 108, 155, 194, 471
AclI AACGTT 1 cut(s) 62
AclWI GGATC 2 cut(s) 17, 270
AcsI RAATTY 1 cut(s) 240
AcuI CTGAAG 1 cut(s) 185
AfaI GTAC 3 cut(s) 217, 355, 515
AfiI CCNNNNNNNGG 1 cut(s) 114
AgsI TTSAA 1 cut(s) 245
AluBI AGCT 3 cut(s) 146, 254, 268
AluI AGCT 3 cut(s) 146, 254, 268
Alw26I GTCTC 1 cut(s) 23
AlwI GGATC 2 cut(s) 17, 270
AlwNI CAGNNNCTG 1 cut(s) 208
Ama87I CYCGRG 1 cut(s) 26
ApoI RAATTY 1 cut(s) 240
Asp718I GGTACC 1 cut(s) 353
AspLEI GCGC 1 cut(s) 319
AsuHPI GGTGA 1 cut(s) 493
AvaI CYCGRG 1 cut(s) 26
BanI GGYRCC 1 cut(s) 353
BccI CCATC 3 cut(s) 34, 145, 157
BcgI CGANNNNNNTGC 2 cut(s) 419, 453
BcoDI GTCTC 1 cut(s) 23
BfaI CTAG 1 cut(s) 255
BisI GCNGC 1 cut(s) 108
BlsI GCNGC 1 cut(s) 109
BmeT110I CYCGRG 1 cut(s) 26
BmiI GGNNCC 1 cut(s) 355
BmsI GCATC 4 cut(s) 34, 367, 421, 495
BplI GAGNNNNNCTC 2 cut(s) 84, 116
BpuEI CTTGAG 1 cut(s) 126
BsaJI CCNNGG 1 cut(s) 178
Bsc4I CCNNNNNNNGG 1 cut(s) 114
Bse1I ACTGG 1 cut(s) 521
Bse3DI GCAATG 1 cut(s) 473
BseDI CCNNGG 1 cut(s) 178
BseGI GGATG 2 cut(s) 49, 486
BseLI CCNNNNNNNGG 1 cut(s) 114
BseMI GCAATG 1 cut(s) 473
BseNI ACTGG 1 cut(s) 521
BseRI GAGGAG 1 cut(s) 198
BseYI CCCAGC 1 cut(s) 80
Bsh1285I CGRYCG 1 cut(s) 159
BshNI GGYRCC 1 cut(s) 353
BsiEI CGRYCG 1 cut(s) 159
BsiHKCI CYCGRG 1 cut(s) 26
BslI CCNNNNNNNGG 1 cut(s) 114
BsmAI GTCTC 1 cut(s) 23
BsmBI CGTCTC 1 cut(s) 23
BsoBI CYCGRG 1 cut(s) 26
Bsp143I GATC 4 cut(s) 22, 124, 262, 420
BspACI CCGC 6 cut(s) 87, 105, 108, 155, 194, 471
BspLI GGNNCC 1 cut(s) 355
BspPI GGATC 2 cut(s) 17, 270
BspT107I GGYRCC 1 cut(s) 353
BsrBI CCGCTC 1 cut(s) 110
BsrDI GCAATG 1 cut(s) 473
BsrI ACTGG 1 cut(s) 521
BssECI CCNNGG 1 cut(s) 178
BssMI GATC 4 cut(s) 22, 124, 262, 420
BssT1I CCWWGG 1 cut(s) 178
Bst4CI ACNGT 3 cut(s) 20, 215, 367
BstAPI GCANNNNNTGC 1 cut(s) 290
BstC8I GCNNGC 1 cut(s) 270
BstF5I GGATG 2 cut(s) 49, 486
BstHHI GCGC 1 cut(s) 319
BstKTI GATC 4 cut(s) 25, 127, 265, 423
BstMAI GTCTC 1 cut(s) 23
BstMBI GATC 4 cut(s) 22, 124, 262, 420
BstMCI CGRYCG 1 cut(s) 159
BstMWI GCNNNNNNNGC 4 cut(s) 152, 290, 316, 325
BtgZI GCGATG 1 cut(s) 182
BtsCI GGATG 2 cut(s) 49, 486
BtsIMutI CAGTG 1 cut(s) 25
Cac8I GCNNGC 1 cut(s) 270
CaiI CAGNNNCTG 1 cut(s) 208
CfoI GCGC 1 cut(s) 319
CseI GACGC 1 cut(s) 40
Csp6I GTAC 3 cut(s) 216, 354, 514
CviAII CATG 4 cut(s) 13, 67, 383, 424
CviJI RGCY 7 cut(s) 118, 146, 254, 268, 272, 310, 328
CviKI_1 RGCY 7 cut(s) 118, 146, 254, 268, 272, 310, 328
CviQI GTAC 3 cut(s) 216, 354, 514
DpnI GATC 4 cut(s) 24, 126, 264, 422
DpnII GATC 4 cut(s) 22, 124, 262, 420
EciI GGCGGA 1 cut(s) 94
Eco130I CCWWGG 1 cut(s) 178
Eco57I CTGAAG 1 cut(s) 185
Eco88I CYCGRG 1 cut(s) 26
EcoRI GAATTC 1 cut(s) 240
EcoT14I CCWWGG 1 cut(s) 178
EcoT22I ATGCAT 1 cut(s) 6
ErhI CCWWGG 1 cut(s) 178
Esp3I CGTCTC 1 cut(s) 23
FaeI CATG 4 cut(s) 16, 70, 386, 427
FatI CATG 4 cut(s) 12, 66, 382, 423
Fnu4HI GCNGC 1 cut(s) 108
FokI GGATG 2 cut(s) 56, 473
Fsp4HI GCNGC 1 cut(s) 108
FspBI CTAG 1 cut(s) 255
GlaI GCGC 1 cut(s) 318
GluI GCNGC 1 cut(s) 108
GsaI CCCAGC 1 cut(s) 84
HgaI GACGC 1 cut(s) 40
HhaI GCGC 1 cut(s) 319
Hin1II CATG 4 cut(s) 16, 70, 386, 427
Hin6I GCGC 1 cut(s) 317
HinP1I GCGC 1 cut(s) 317
HinfI GANTC 1 cut(s) 50
HphI GGTGA 1 cut(s) 493
Hpy166II GTNNAC 1 cut(s) 224
Hpy188I TCNGA 1 cut(s) 204
Hpy188III TCNNGA 4 cut(s) 26, 160, 245, 398
Hpy8I GTNNAC 1 cut(s) 224
Hpy99I CGWCG 1 cut(s) 125
HpyCH4III ACNGT 3 cut(s) 20, 215, 367
HpyCH4IV ACGT 2 cut(s) 62, 335
HpyCH4V TGCA 3 cut(s) 4, 284, 466
HpyF10VI GCNNNNNNNGC 4 cut(s) 152, 290, 316, 325
HpySE526I ACGT 2 cut(s) 62, 335
Hsp92II CATG 4 cut(s) 16, 70, 386, 427
HspAI GCGC 1 cut(s) 317
KpnI GGTACC 1 cut(s) 357
Kzo9I GATC 4 cut(s) 22, 124, 262, 420
LpnPI CCDG 6 cut(s) 94, 103, 254, 383, 464, 502
LweI GCATC 4 cut(s) 34, 367, 421, 495
MaeI CTAG 1 cut(s) 255
MaeII ACGT 2 cut(s) 62, 335
MaeIII GTNAC 2 cut(s) 367, 414
MalI GATC 4 cut(s) 24, 126, 264, 422
MbiI CCGCTC 1 cut(s) 110
MboI GATC 4 cut(s) 22, 124, 262, 420
MboII GAAGA 1 cut(s) 191
MluCI AATT 1 cut(s) 240
MlyI GAGTC 1 cut(s) 44
MnlI CCTC 5 cut(s) 110, 176, 184, 321, 405
Mph1103I ATGCAT 1 cut(s) 6
MspA1I CMGCKG 1 cut(s) 268
MwoI GCNNNNNNNGC 4 cut(s) 152, 290, 316, 325
NdeII GATC 4 cut(s) 22, 124, 262, 420
NlaIII CATG 4 cut(s) 16, 70, 386, 427
NlaIV GGNNCC 1 cut(s) 355
NmuCI GTSAC 1 cut(s) 414
NsiI ATGCAT 1 cut(s) 6
PkrI GCNGC 1 cut(s) 109
PleI GAGTC 1 cut(s) 44
PpsI GAGTC 1 cut(s) 44
Psp1406I AACGTT 1 cut(s) 62
PspFI CCCAGC 1 cut(s) 80
PspN4I GGNNCC 1 cut(s) 355
PstNI CAGNNNCTG 1 cut(s) 208
PvuII CAGCTG 1 cut(s) 268
RsaI GTAC 3 cut(s) 217, 355, 515
RsaNI GTAC 3 cut(s) 216, 354, 514
SatI GCNGC 1 cut(s) 108
Sau3AI GATC 4 cut(s) 22, 124, 262, 420
SchI GAGTC 1 cut(s) 44
SetI ASST 6 cut(s) 65, 148, 256, 270, 338, 416
SfaNI GCATC 4 cut(s) 34, 367, 421, 495
SmlI CTYRAG 1 cut(s) 141
SmoI CTYRAG 1 cut(s) 141
Sse9I AATT 1 cut(s) 240
SsiI CCGC 6 cut(s) 87, 105, 108, 155, 194, 471
SspMI CTAG 1 cut(s) 255
StyI CCWWGG 1 cut(s) 178
TaaI ACNGT 3 cut(s) 20, 215, 367
TaiI ACGT 2 cut(s) 65, 338
TaqI TCGA 3 cut(s) 72, 123, 429
TasI AATT 1 cut(s) 240
TauI GCSGC 1 cut(s) 110
TscAI CASTG 1 cut(s) 25
TseFI GTSAC 1 cut(s) 414
Tsp45I GTSAC 1 cut(s) 414
TspDTI ATGAA 3 cut(s) 29, 55, 516
TspGWI ACGGA 1 cut(s) 459
TspRI CASTG 1 cut(s) 25
XapI RAATTY 1 cut(s) 240
XspI CTAG 1 cut(s) 255
Zsp2I ATGCAT 1 cut(s) 6
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.