Prupe.1G431400_v2.0.a1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
prunus_persica
Pp01
OG0010893
Physical Location & Seq
Forward (+)
36955991 .. 36958025
2035 bp
Loading structure...
UTR
Exon/CDS
Intron
Prupe.1G431400.1

Sequence Viewer

Length: 537 bp
ATGAACATGGACCGTACGGACGCGGAGATGATGGAGATGGAGACGACGGCGATTGGGCAGCCGGAGCTGCCGTCCGACGCCGGCCAAGGCGACGTCTTAAGGGACTTTCTCGCATTGGCTCGCCAGCTCCTCAATCAAGGCAAGCCATCGCAGGCCCTCCAAGCGGTTGTTATGGCAATGAGAACAAGAGGTGGGGATGAGGCTGTATTTGAGTCCTTACATCGTGCTCGTGAGCTGTACAGAAGTAGATTGCAAGAAAGCTCTGCTGTTGATCAACTAGCTTCTTTGTTTGCTGAGTGTGCAATTGCTGAAGTCCATCCTTCCAAAACTGAACCAGCAGCAGGTGACGAGGGTGGCCCGTCAGTTGGACTTGGACCTGATGCTGAAGGAACTTCTATACTAGCGGAAAGTGGCAGGATGCAGATTGTATTGGATGCATTTTCAGATGGGAGTAGCTTCATTTGTTTACAGTGTGGAGGTCTTGTTAGTAATCATCGCAAAGACGAGCACTATGCATATTGGTGTGGCCAAACTTAA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

179

Amino Acids

19.15

Weight (kDa)

4.58

Isoelectric Point (pI)

41.75

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47830 AT5G47830
fragaria_vesca FvH4_2g33950
malus_domestica MD06G1210300.v1.1 MD08G1095400.v1.1 MD15G1077900.v1.1 MD17G1062600.v1.1
prunus_persica Prupe.1G431400_v2.0.a1
pyrus_communis pycom15g07260
rosa_chinensis RchiOBHm_Chr6g0308461
rosa_laevigata RLG00000010641
rosa_multiflora Rmu_co8427491.1_g000001 Rmu_sc0011796.1_g000007
rosa_roxburghii Rroxscaffold_7G00160110
rosa_rugosa Rorug06G0367000
rosa_samantha Rh6AG476700 Rh6BG486900 Rh6CG492000 Rh6DG478100
rosa_wichuraiana Rw6G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AarI CACCTGC 1 cut(s) 332
AatII GACGTC 1 cut(s) 96
Acc36I ACCTGC 1 cut(s) 332
AccII CGCG 1 cut(s) 23
AciI CCGC 3 cut(s) 23, 164, 404
AcoI YGGCCR 2 cut(s) 82, 526
AcuI CTGAAG 2 cut(s) 330, 405
AcyI GRCGYC 2 cut(s) 78, 93
AfaI GTAC 2 cut(s) 16, 239
AfiI CCNNNNNNNGG 3 cut(s) 163, 341, 365
AflII CTTAAG 1 cut(s) 97
AluBI AGCT 6 cut(s) 67, 127, 235, 261, 281, 456
AluI AGCT 6 cut(s) 67, 127, 235, 261, 281, 456
Alw21I GWGCWC 2 cut(s) 229, 510
Alw26I GTCTC 1 cut(s) 35
AoxI GGCC 4 cut(s) 82, 153, 355, 526
ApeKI GCWGC 3 cut(s) 58, 67, 338
AspS9I GGNCC 4 cut(s) 10, 154, 356, 374
AsuHPI GGTGA 1 cut(s) 356
AvaII GGWCC 2 cut(s) 10, 374
BalI TGGCCA 1 cut(s) 528
BauI CACGAG 1 cut(s) 228
Bbv12I GWGCWC 2 cut(s) 229, 510
BbvI GCAGC 3 cut(s) 54, 70, 350
BccI CCATC 5 cut(s) 25, 31, 154, 324, 440
BceAI ACGGC 2 cut(s) 55, 63
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BclI TGATCA 1 cut(s) 271
BcoDI GTCTC 1 cut(s) 35
BfaI CTAG 2 cut(s) 278, 401
BfrI CTTAAG 1 cut(s) 97
BfuAI ACCTGC 1 cut(s) 332
BisI GCNGC 3 cut(s) 59, 68, 339
BlsI GCNGC 3 cut(s) 60, 69, 340
Bme18I GGWCC 2 cut(s) 10, 374
BmgT120I GGNCC 4 cut(s) 10, 154, 356, 374
BmsI GCATC 3 cut(s) 370, 408, 424
BsaHI GRCGYC 2 cut(s) 78, 93
BsaJI CCNNGG 1 cut(s) 85
BsaXI ACNNNNNCTCC 4 cut(s) 56, 86, 468, 498
Bsc4I CCNNNNNNNGG 3 cut(s) 163, 341, 365
Bse118I RCCGGY 1 cut(s) 80
Bse3DI GCAATG 1 cut(s) 183
BseDI CCNNGG 1 cut(s) 85
BseGI GGATG 4 cut(s) 202, 316, 423, 439
BseLI CCNNNNNNNGG 3 cut(s) 163, 341, 365
BseMI GCAATG 1 cut(s) 183
BseMII CTCAG 1 cut(s) 285
BseRI GAGGAG 1 cut(s) 119
BseXI GCAGC 3 cut(s) 54, 70, 350
Bsh1236I CGCG 1 cut(s) 23
BshFI GGCC 4 cut(s) 84, 155, 357, 528
BsiHKAI GWGCWC 2 cut(s) 229, 510
BsiSI CCGG 2 cut(s) 62, 81
BsiWI CGTACG 1 cut(s) 14
BslFI GGGAC 1 cut(s) 116
BslI CCNNNNNNNGG 3 cut(s) 163, 341, 365
BsmAI GTCTC 1 cut(s) 35
BsmBI CGTCTC 1 cut(s) 35
BsmFI GGGAC 1 cut(s) 116
BsnI GGCC 4 cut(s) 84, 155, 357, 528
Bsp1286I GDGCHC 2 cut(s) 229, 510
Bsp1407I TGTACA 1 cut(s) 237
Bsp143I GATC 1 cut(s) 271
BspACI CCGC 3 cut(s) 23, 164, 404
BspANI GGCC 4 cut(s) 84, 155, 357, 528
BspCNI CTCAG 1 cut(s) 286
BspFNI CGCG 1 cut(s) 23
BspMI ACCTGC 1 cut(s) 332
BspTI CTTAAG 1 cut(s) 97
BsrDI GCAATG 1 cut(s) 183
BsrFI RCCGGY 1 cut(s) 80
BsrGI TGTACA 1 cut(s) 237
BssAI RCCGGY 1 cut(s) 80
BssECI CCNNGG 1 cut(s) 85
BssMI GATC 1 cut(s) 271
BssNI GRCGYC 2 cut(s) 78, 93
BssSI CACGAG 1 cut(s) 228
BssT1I CCWWGG 1 cut(s) 85
Bst2BI CACGAG 1 cut(s) 228
Bst4CI ACNGT 2 cut(s) 14, 471
BstACI GRCGYC 2 cut(s) 78, 93
BstAFI CTTAAG 1 cut(s) 97
BstAUI TGTACA 1 cut(s) 237
BstC8I GCNNGC 5 cut(s) 82, 121, 125, 143, 153
BstDEI CTNAG 1 cut(s) 294
BstF5I GGATG 4 cut(s) 202, 316, 423, 439
BstFNI CGCG 1 cut(s) 23
BstKTI GATC 1 cut(s) 274
BstMAI GTCTC 1 cut(s) 35
BstMBI GATC 1 cut(s) 271
BstMWI GCNNNNNNNGC 4 cut(s) 64, 67, 161, 299
BstUI CGCG 1 cut(s) 23
BstV1I GCAGC 3 cut(s) 54, 70, 350
BsuRI GGCC 4 cut(s) 84, 155, 357, 528
BtgZI GCGATG 2 cut(s) 132, 479
BtsCI GGATG 4 cut(s) 202, 316, 423, 439
BtsIMutI CAGTG 1 cut(s) 476
BveI ACCTGC 1 cut(s) 332
Cac8I GCNNGC 5 cut(s) 82, 121, 125, 143, 153
Cfr10I RCCGGY 1 cut(s) 80
Cfr13I GGNCC 4 cut(s) 10, 154, 356, 374
CseI GACGC 2 cut(s) 29, 86
Csp6I GTAC 2 cut(s) 15, 238
CviAII CATG 1 cut(s) 7
CviQI GTAC 2 cut(s) 15, 238
DdeI CTNAG 1 cut(s) 294
DpnI GATC 1 cut(s) 273
DpnII GATC 1 cut(s) 271
EaeI YGGCCR 2 cut(s) 82, 526
Eco130I CCWWGG 1 cut(s) 85
Eco47I GGWCC 2 cut(s) 10, 374
Eco57I CTGAAG 2 cut(s) 330, 405
EcoO109I RGGNCCY 1 cut(s) 154
EcoT14I CCWWGG 1 cut(s) 85
EcoT22I ATGCAT 2 cut(s) 439, 517
ErhI CCWWGG 1 cut(s) 85
Esp3I CGTCTC 1 cut(s) 35
FaeI CATG 1 cut(s) 10
FaiI YATR 5 cut(s) 8, 173, 398, 513, 517
FaqI GGGAC 1 cut(s) 116
FatI CATG 1 cut(s) 6
FbaI TGATCA 1 cut(s) 271
Fnu4HI GCNGC 3 cut(s) 59, 68, 339
FokI GGATG 4 cut(s) 209, 303, 430, 446
Fsp4HI GCNGC 3 cut(s) 59, 68, 339
FspBI CTAG 2 cut(s) 278, 401
GluI GCNGC 3 cut(s) 59, 68, 339
HaeIII GGCC 4 cut(s) 84, 155, 357, 528
HapII CCGG 2 cut(s) 62, 81
HgaI GACGC 2 cut(s) 29, 86
Hin1I GRCGYC 2 cut(s) 78, 93
Hin1II CATG 1 cut(s) 10
HinfI GANTC 1 cut(s) 212
HpaII CCGG 2 cut(s) 62, 81
HphI GGTGA 1 cut(s) 356
Hpy166II GTNNAC 1 cut(s) 467
Hpy188I TCNGA 2 cut(s) 76, 445
Hpy188III TCNNGA 1 cut(s) 230
Hpy8I GTNNAC 1 cut(s) 467
Hpy99I CGWCG 3 cut(s) 49, 80, 95
HpyAV CCTTC 2 cut(s) 330, 380
HpyCH4III ACNGT 2 cut(s) 14, 471
HpyCH4IV ACGT 1 cut(s) 93
HpyCH4V TGCA 5 cut(s) 253, 302, 421, 437, 515
HpyF10VI GCNNNNNNNGC 4 cut(s) 64, 67, 161, 299
HpyF3I CTNAG 1 cut(s) 294
HpySE526I ACGT 1 cut(s) 93
Hsp92I GRCGYC 2 cut(s) 78, 93
Hsp92II CATG 1 cut(s) 10
KroI GCCGGC 1 cut(s) 80
KroNI GCCGGC 1 cut(s) 82
Ksp22I TGATCA 1 cut(s) 271
Kzo9I GATC 1 cut(s) 271
LmnI GCTCC 2 cut(s) 64, 132
LpnPI CCDG 8 cut(s) 75, 94, 137, 137, 327, 348, 390, 400
Lsp1109I GCAGC 3 cut(s) 54, 70, 350
LweI GCATC 3 cut(s) 370, 408, 424
MaeI CTAG 2 cut(s) 278, 401
MaeII ACGT 1 cut(s) 93
MaeIII GTNAC 1 cut(s) 344
MalI GATC 1 cut(s) 273
MboI GATC 1 cut(s) 271
MfeI CAATTG 1 cut(s) 303
MhlI GDGCHC 2 cut(s) 229, 510
MlsI TGGCCA 1 cut(s) 528
MluCI AATT 1 cut(s) 303
MluNI TGGCCA 1 cut(s) 528
MlyI GAGTC 1 cut(s) 221
MmeI TCCRAC 2 cut(s) 99, 346
MnlI CCTC 6 cut(s) 140, 167, 182, 193, 343, 470
Mox20I TGGCCA 1 cut(s) 528
Mph1103I ATGCAT 2 cut(s) 439, 517
MroNI GCCGGC 1 cut(s) 80
MscI TGGCCA 1 cut(s) 528
MseI TTAA 2 cut(s) 98, 535
MslI CAYNNNNRTG 1 cut(s) 520
Msp20I TGGCCA 1 cut(s) 528
MspCI CTTAAG 1 cut(s) 97
MspI CCGG 2 cut(s) 62, 81
MunI CAATTG 1 cut(s) 303
MvnI CGCG 1 cut(s) 23
MwoI GCNNNNNNNGC 4 cut(s) 64, 67, 161, 299
NaeI GCCGGC 1 cut(s) 82
NdeII GATC 1 cut(s) 271
NgoMIV GCCGGC 1 cut(s) 80
NlaIII CATG 1 cut(s) 10
NmuCI GTSAC 1 cut(s) 344
NsiI ATGCAT 2 cut(s) 439, 517
PaqCI CACCTGC 1 cut(s) 332
PdiI GCCGGC 1 cut(s) 82
Pfl23II CGTACG 1 cut(s) 14
PkrI GCNGC 3 cut(s) 60, 69, 340
PleI GAGTC 1 cut(s) 220
PpsI GAGTC 1 cut(s) 220
PspLI CGTACG 1 cut(s) 14
PspPI GGNCC 4 cut(s) 10, 154, 356, 374
RsaI GTAC 2 cut(s) 16, 239
RsaNI GTAC 2 cut(s) 15, 238
RseI CAYNNNNRTG 1 cut(s) 520
SaqAI TTAA 2 cut(s) 98, 535
SatI GCNGC 3 cut(s) 59, 68, 339
Sau3AI GATC 1 cut(s) 271
Sau96I GGNCC 4 cut(s) 10, 154, 356, 374
SchI GAGTC 1 cut(s) 221
SduI GDGCHC 2 cut(s) 229, 510
SfaNI GCATC 3 cut(s) 370, 408, 424
SinI GGWCC 2 cut(s) 10, 374
SmiMI CAYNNNNRTG 1 cut(s) 520
SmlI CTYRAG 1 cut(s) 97
SmoI CTYRAG 1 cut(s) 97
Sse9I AATT 1 cut(s) 303
SsiI CCGC 3 cut(s) 23, 164, 404
SspMI CTAG 2 cut(s) 278, 401
StyI CCWWGG 1 cut(s) 85
TaaI ACNGT 2 cut(s) 14, 471
TaiI ACGT 1 cut(s) 96
TasI AATT 1 cut(s) 303
TatI WGTACW 1 cut(s) 237
Tru1I TTAA 2 cut(s) 98, 535
Tru9I TTAA 2 cut(s) 98, 535
TscAI CASTG 1 cut(s) 476
TseFI GTSAC 1 cut(s) 344
TseI GCWGC 3 cut(s) 58, 67, 338
Tsp45I GTSAC 1 cut(s) 344
TspDTI ATGAA 2 cut(s) 17, 448
TspGWI ACGGA 1 cut(s) 32
TspRI CASTG 1 cut(s) 476
Vha464I CTTAAG 1 cut(s) 97
VpaK11BI GGWCC 2 cut(s) 10, 374
XspI CTAG 2 cut(s) 278, 401
ZraI GACGTC 1 cut(s) 94
Zsp2I ATGCAT 2 cut(s) 439, 517
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.