Rh6DG478100

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6D
OG0010893
Physical Location & Seq
Reverse (-)
64327078 .. 64329349
2272 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6DG478100.1

Sequence Viewer

Length: 708 bp
ATGTGTTCTCGTGAGTATTGGGCCAAAGAAAGGAAAGAAACCCAAGAAATAAACAGGCCGGAAAATGGACACCGGGGGAAACCCGACCTCCAGAATTTGCTAGAACCGTCTCTCGCTTTATCAAAAGTTTCAAAATCGAAAGGAATCCGAAATAGGCGTACAAATGCCAGCATGGAGCGTACGCACACAGAGATGATGGAGACGGAGATGGAGGTGGACACCGCCGTGACTGGGCGGCCGGAGCCGCCGCCTAATACCGGCCAAAGTGACGTCGTCAGGGACCTGCTCACATTGGCTCGCCAGCTCGTCGGTGAAGGCAAGCCCACTCAGGCCCTCCAAGCGGTTATTATGGCATCAAGAACCAGAGGTGGGGATGAGGCTGTTGTTCAGTCCTTGCAACGTGCTCGTGAGCTATACAGATGTAGATTGCAAGAAAGCACTGCTGTTGATCAGTTAGCCTCTTTGTTTGCCGAGTGCGCAATTGATGAAGCTCAGCCTTCAAAACCTGAATCATCAGCACATAACGTGAGTGGCCCGTCAGCTGGACCCGATGCTCATGGAACTTCTATACTGGCGGAAAGTGGCAGGATGCAGATTGTGCTGGATGCATTTTCAGATGGGAGCAGCTTCATTTGCTTACAGTGTGGAGGTCTTGTTAGCAATCATCGCAAAGACGAGCACTATGCCTACTGGTGTTGCCAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

235

Amino Acids

25.9

Weight (kDa)

5.91

Isoelectric Point (pI)

37.68

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2HC_3 PF25017 188 - 233 7.5e-26 C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47830 AT5G47830
fragaria_vesca FvH4_2g33950
malus_domestica MD06G1210300.v1.1 MD08G1095400.v1.1 MD15G1077900.v1.1 MD17G1062600.v1.1
prunus_persica Prupe.1G431400_v2.0.a1
pyrus_communis pycom15g07260
rosa_chinensis RchiOBHm_Chr6g0308461
rosa_laevigata RLG00000010641
rosa_multiflora Rmu_co8427491.1_g000001 Rmu_sc0011796.1_g000007
rosa_roxburghii Rroxscaffold_7G00160110
rosa_rugosa Rorug06G0367000
rosa_samantha Rh6AG476700 Rh6BG486900 Rh6CG492000 Rh6DG478100
rosa_wichuraiana Rw6G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 273
Acc16I TGCGCA 1 cut(s) 478
Acc36I ACCTGC 1 cut(s) 291
AciI CCGC 6 cut(s) 222, 235, 245, 248, 341, 575
AcoI YGGCCR 2 cut(s) 236, 259
AcsI RAATTY 2 cut(s) 94, 702
AcyI GRCGYC 1 cut(s) 270
AfaI GTAC 2 cut(s) 160, 181
AfiI CCNNNNNNNGG 7 cut(s) 30, 65, 231, 257, 340, 369, 542
AgsI TTSAA 2 cut(s) 132, 501
AleI CACNNNNGTG 1 cut(s) 224
AluBI AGCT 5 cut(s) 304, 412, 491, 542, 627
AluI AGCT 5 cut(s) 304, 412, 491, 542, 627
Alw21I GWGCWC 2 cut(s) 406, 681
Alw26I GTCTC 2 cut(s) 114, 194
AoxI GGCC 6 cut(s) 21, 56, 236, 259, 330, 532
ApeKI GCWGC 1 cut(s) 624
ApoI RAATTY 2 cut(s) 94, 702
AspLEI GCGC 1 cut(s) 479
AspS9I GGNCC 5 cut(s) 21, 280, 331, 533, 545
AsuC2I CCSGG 1 cut(s) 74
AsuHPI GGTGA 1 cut(s) 323
AvaII GGWCC 2 cut(s) 280, 545
BauI CACGAG 2 cut(s) 9, 405
Bbv12I GWGCWC 2 cut(s) 406, 681
BbvI GCAGC 1 cut(s) 636
BccI CCATC 3 cut(s) 190, 202, 611
BceAI ACGGC 1 cut(s) 209
BcgI CGANNNNNNTGC 4 cut(s) 386, 420, 665, 699
BclI TGATCA 1 cut(s) 448
BcnI CCSGG 1 cut(s) 74
BcoDI GTCTC 2 cut(s) 114, 194
BfaI CTAG 1 cut(s) 101
BfuAI ACCTGC 1 cut(s) 291
BisI GCNGC 4 cut(s) 236, 245, 248, 625
BlpI GCTNAGC 1 cut(s) 492
BlsI GCNGC 4 cut(s) 237, 246, 249, 626
Bme1390I CCNGG 1 cut(s) 74
Bme18I GGWCC 2 cut(s) 280, 545
BmgT120I GGNCC 5 cut(s) 21, 280, 331, 533, 545
BmiI GGNNCC 3 cut(s) 243, 281, 547
BmrFI CCNGG 1 cut(s) 74
BmrI ACTGGG 1 cut(s) 240
BmsI GCATC 4 cut(s) 362, 541, 579, 595
BmuI ACTGGG 1 cut(s) 240
BpmI CTGGAG 1 cut(s) 74
Bpu1102I GCTNAGC 1 cut(s) 492
BpuMI CCSGG 1 cut(s) 74
BsaHI GRCGYC 1 cut(s) 270
BsaJI CCNNGG 1 cut(s) 73
BsaXI ACNNNNNCTCC 4 cut(s) 72, 102, 639, 669
Bsc4I CCNNNNNNNGG 7 cut(s) 30, 65, 231, 257, 340, 369, 542
Bse118I RCCGGY 1 cut(s) 257
Bse1I ACTGG 3 cut(s) 235, 576, 695
BseDI CCNNGG 1 cut(s) 73
BseGI GGATG 3 cut(s) 379, 594, 610
BseLI CCNNNNNNNGG 7 cut(s) 30, 65, 231, 257, 340, 369, 542
BseMII CTCAG 2 cut(s) 341, 506
BseNI ACTGG 3 cut(s) 235, 576, 695
BseX3I CGGCCG 1 cut(s) 236
BseXI GCAGC 1 cut(s) 636
Bsh1285I CGRYCG 1 cut(s) 239
BshFI GGCC 6 cut(s) 23, 58, 238, 261, 332, 534
BsiEI CGRYCG 1 cut(s) 239
BsiHKAI GWGCWC 2 cut(s) 406, 681
BsiSI CCGG 4 cut(s) 59, 73, 239, 258
BsiWI CGTACG 1 cut(s) 179
BslFI GGGAC 1 cut(s) 293
BslI CCNNNNNNNGG 7 cut(s) 30, 65, 231, 257, 340, 369, 542
BsmAI GTCTC 2 cut(s) 114, 194
BsmBI CGTCTC 2 cut(s) 114, 194
BsmFI GGGAC 1 cut(s) 293
BsnI GGCC 6 cut(s) 23, 58, 238, 261, 332, 534
Bsp1286I GDGCHC 2 cut(s) 406, 681
Bsp143I GATC 1 cut(s) 448
Bsp1720I GCTNAGC 1 cut(s) 492
BspACI CCGC 6 cut(s) 222, 235, 245, 248, 341, 575
BspANI GGCC 6 cut(s) 23, 58, 238, 261, 332, 534
BspCNI CTCAG 2 cut(s) 340, 505
BspLI GGNNCC 3 cut(s) 243, 281, 547
BspMI ACCTGC 1 cut(s) 291
BsrFI RCCGGY 1 cut(s) 257
BsrI ACTGG 3 cut(s) 235, 576, 695
BssAI RCCGGY 1 cut(s) 257
BssECI CCNNGG 1 cut(s) 73
BssMI GATC 1 cut(s) 448
BssNI GRCGYC 1 cut(s) 270
BssSI CACGAG 2 cut(s) 9, 405
Bst2BI CACGAG 2 cut(s) 9, 405
Bst4CI ACNGT 2 cut(s) 108, 642
BstACI GRCGYC 1 cut(s) 270
BstAPI GCANNNNNTGC 1 cut(s) 598
BstC8I GCNNGC 4 cut(s) 169, 298, 302, 320
BstDEI CTNAG 2 cut(s) 327, 492
BstF5I GGATG 3 cut(s) 379, 594, 610
BstHHI GCGC 1 cut(s) 479
BstKTI GATC 1 cut(s) 451
BstMAI GTCTC 2 cut(s) 114, 194
BstMBI GATC 1 cut(s) 448
BstMCI CGRYCG 1 cut(s) 239
BstMWI GCNNNNNNNGC 7 cut(s) 241, 244, 338, 476, 598, 633, 666
BstSCI CCNGG 1 cut(s) 72
BstV1I GCAGC 1 cut(s) 636
BstZI CGGCCG 1 cut(s) 236
BsuRI GGCC 6 cut(s) 23, 58, 238, 261, 332, 534
BtgZI GCGATG 1 cut(s) 650
BtsCI GGATG 3 cut(s) 379, 594, 610
BtsI GCAGTG 1 cut(s) 438
BtsIMutI CAGTG 2 cut(s) 438, 647
BveI ACCTGC 1 cut(s) 291
Cac8I GCNNGC 4 cut(s) 169, 298, 302, 320
CfoI GCGC 1 cut(s) 479
Cfr10I RCCGGY 1 cut(s) 257
Cfr13I GGNCC 5 cut(s) 21, 280, 331, 533, 545
Csp6I GTAC 2 cut(s) 159, 180
CviAII CATG 2 cut(s) 172, 557
CviQI GTAC 2 cut(s) 159, 180
DdeI CTNAG 2 cut(s) 327, 492
DpnI GATC 1 cut(s) 450
DpnII GATC 1 cut(s) 448
EaeI YGGCCR 2 cut(s) 236, 259
EagI CGGCCG 1 cut(s) 236
EciI GGCGGA 1 cut(s) 590
EclXI CGGCCG 1 cut(s) 236
Eco47I GGWCC 2 cut(s) 280, 545
Eco52I CGGCCG 1 cut(s) 236
EcoO109I RGGNCCY 2 cut(s) 280, 331
EcoT22I ATGCAT 1 cut(s) 610
Esp3I CGTCTC 2 cut(s) 114, 194
FaeI CATG 2 cut(s) 175, 560
FaiI YATR 7 cut(s) 173, 350, 415, 522, 558, 569, 684
FaqI GGGAC 1 cut(s) 293
FatI CATG 2 cut(s) 171, 556
FbaI TGATCA 1 cut(s) 448
Fnu4HI GCNGC 4 cut(s) 236, 245, 248, 625
FokI GGATG 3 cut(s) 386, 601, 617
Fsp4HI GCNGC 4 cut(s) 236, 245, 248, 625
FspBI CTAG 1 cut(s) 101
FspI TGCGCA 1 cut(s) 478
GlaI GCGC 1 cut(s) 478
GluI GCNGC 4 cut(s) 236, 245, 248, 625
GsuI CTGGAG 1 cut(s) 74
HaeIII GGCC 6 cut(s) 23, 58, 238, 261, 332, 534
HapII CCGG 4 cut(s) 59, 73, 239, 258
HhaI GCGC 1 cut(s) 479
Hin1I GRCGYC 1 cut(s) 270
Hin1II CATG 2 cut(s) 175, 560
Hin6I GCGC 1 cut(s) 477
HinP1I GCGC 1 cut(s) 477
HinfI GANTC 2 cut(s) 144, 509
HpaII CCGG 4 cut(s) 59, 73, 239, 258
HphI GGTGA 1 cut(s) 323
Hpy166II GTNNAC 1 cut(s) 217
Hpy188I TCNGA 2 cut(s) 149, 616
Hpy188III TCNNGA 4 cut(s) 11, 91, 357, 407
Hpy8I GTNNAC 1 cut(s) 217
Hpy99I CGWCG 2 cut(s) 275, 311
HpyAV CCTTC 2 cut(s) 308, 507
HpyCH4III ACNGT 2 cut(s) 108, 642
HpyCH4IV ACGT 3 cut(s) 270, 400, 525
HpyCH4V TGCA 4 cut(s) 397, 430, 592, 608
HpyF10VI GCNNNNNNNGC 7 cut(s) 241, 244, 338, 476, 598, 633, 666
HpyF3I CTNAG 2 cut(s) 327, 492
HpySE526I ACGT 3 cut(s) 270, 400, 525
Hsp92I GRCGYC 1 cut(s) 270
Hsp92II CATG 2 cut(s) 175, 560
HspAI GCGC 1 cut(s) 477
Ksp22I TGATCA 1 cut(s) 448
Kzo9I GATC 1 cut(s) 448
LmnI GCTCC 3 cut(s) 175, 241, 621
Lsp1109I GCAGC 1 cut(s) 636
LweI GCATC 4 cut(s) 362, 541, 579, 595
MaeI CTAG 1 cut(s) 101
MaeII ACGT 3 cut(s) 270, 400, 525
MaeIII GTNAC 2 cut(s) 226, 266
MalI GATC 1 cut(s) 450
MboI GATC 1 cut(s) 448
MfeI CAATTG 1 cut(s) 480
MhlI GDGCHC 2 cut(s) 406, 681
MluCI AATT 3 cut(s) 94, 480, 702
MnlI CCTC 7 cut(s) 98, 205, 344, 359, 370, 469, 641
Mph1103I ATGCAT 1 cut(s) 610
MslI CAYNNNNRTG 2 cut(s) 191, 224
MspA1I CMGCKG 1 cut(s) 542
MspI CCGG 4 cut(s) 59, 73, 239, 258
MspR9I CCNGG 1 cut(s) 74
MunI CAATTG 1 cut(s) 480
MwoI GCNNNNNNNGC 7 cut(s) 241, 244, 338, 476, 598, 633, 666
NciI CCSGG 1 cut(s) 74
NdeII GATC 1 cut(s) 448
NlaIII CATG 2 cut(s) 175, 560
NlaIV GGNNCC 3 cut(s) 243, 281, 547
NmeAIII GCCGAG 1 cut(s) 496
NmuCI GTSAC 2 cut(s) 226, 266
NsbI TGCGCA 1 cut(s) 478
NsiI ATGCAT 1 cut(s) 610
OliI CACNNNNGTG 1 cut(s) 224
PfeI GAWTC 2 cut(s) 144, 509
Pfl23II CGTACG 1 cut(s) 179
PflFI GACNNNGTC 1 cut(s) 272
PkrI GCNGC 4 cut(s) 237, 246, 249, 626
PpuMI RGGWCCY 1 cut(s) 280
Psp5II RGGWCCY 1 cut(s) 280
PspLI CGTACG 1 cut(s) 179
PspN4I GGNNCC 3 cut(s) 243, 281, 547
PspPI GGNCC 5 cut(s) 21, 280, 331, 533, 545
PspPPI RGGWCCY 1 cut(s) 280
PsyI GACNNNGTC 1 cut(s) 272
PvuII CAGCTG 1 cut(s) 542
RsaI GTAC 2 cut(s) 160, 181
RsaNI GTAC 2 cut(s) 159, 180
RseI CAYNNNNRTG 2 cut(s) 191, 224
SatI GCNGC 4 cut(s) 236, 245, 248, 625
Sau3AI GATC 1 cut(s) 448
Sau96I GGNCC 5 cut(s) 21, 280, 331, 533, 545
ScrFI CCNGG 1 cut(s) 74
SduI GDGCHC 2 cut(s) 406, 681
SfaNI GCATC 4 cut(s) 362, 541, 579, 595
SinI GGWCC 2 cut(s) 280, 545
SmiMI CAYNNNNRTG 2 cut(s) 191, 224
Sse9I AATT 3 cut(s) 94, 480, 702
SsiI CCGC 6 cut(s) 222, 235, 245, 248, 341, 575
SspMI CTAG 1 cut(s) 101
StyD4I CCNGG 1 cut(s) 72
TaaI ACNGT 2 cut(s) 108, 642
TaiI ACGT 3 cut(s) 273, 403, 528
TaqI TCGA 1 cut(s) 137
TasI AATT 3 cut(s) 94, 480, 702
TauI GCSGC 3 cut(s) 238, 247, 250
TfiI GAWTC 2 cut(s) 144, 509
TscAI CASTG 2 cut(s) 445, 647
TseFI GTSAC 2 cut(s) 226, 266
TseI GCWGC 1 cut(s) 624
Tsp45I GTSAC 2 cut(s) 226, 266
TspDTI ATGAA 2 cut(s) 501, 619
TspGWI ACGGA 1 cut(s) 218
TspRI CASTG 2 cut(s) 445, 647
Tth111I GACNNNGTC 1 cut(s) 272
VpaK11BI GGWCC 2 cut(s) 280, 545
XapI RAATTY 2 cut(s) 94, 702
XspI CTAG 1 cut(s) 101
ZraI GACGTC 1 cut(s) 271
Zsp2I ATGCAT 1 cut(s) 610
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.