pycom15g07260

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
pyrus_communis
Chr15
OG0010893
Physical Location & Seq
Reverse (-)
4449033 .. 4450247
1215 bp
Loading structure...
UTR
Exon/CDS
Intron
pycom15g07260.2

Sequence Viewer

Length: 510 bp
ATGAACCATACGGACACGGAGATGATGGAGACGGCGGGGCCGTCCAACACCGGCCAAGGCGACGTCGTCAGGGACTTGCTCACATTGTCTCGCCAGCTCCTTAATCAAGGCAAGCCTTCCCAGGCCCTTCAAGCGGTTGTTATGGCAATGAGAACAAGGGGTGGGGAAGAGGCTGTATTTCAGTCCTTGCATCGTGCTCGTGAGCTGTACAGAAGTAGATTGCAAGAAAGTGCTGCTGCTGATCAACTAGCTTCTTTGTTTGCGGAGTGTGCAATTGCCGAAGCTCATCCTTCGAAGACTGAACCAGAAGCAGCAGGTAACGTGGGTGGTCCGTCAGTTGGTGCTGGACCTGATGATCAAGGAAGTTCCATACTGGCGGAAACTGGCAGGATGCAGGTTGTGTTGGATGCATTTTCAGATGGGAGTAGCTTCATTTGTTTACAGTGTGGAGGTCTTGTTAGCAATCATCGCAAAGACGAGCACTACGCATACTGGTGTTGCCAAACTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

170

Amino Acids

18.07

Weight (kDa)

5.01

Isoelectric Point (pI)

39.5

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47830 AT5G47830
fragaria_vesca FvH4_2g33950
malus_domestica MD06G1210300.v1.1 MD08G1095400.v1.1 MD15G1077900.v1.1 MD17G1062600.v1.1
prunus_persica Prupe.1G431400_v2.0.a1
pyrus_communis pycom15g07260
rosa_chinensis RchiOBHm_Chr6g0308461
rosa_laevigata RLG00000010641
rosa_multiflora Rmu_co8427491.1_g000001 Rmu_sc0011796.1_g000007
rosa_roxburghii Rroxscaffold_7G00160110
rosa_rugosa Rorug06G0367000
rosa_samantha Rh6AG476700 Rh6BG486900 Rh6CG492000 Rh6DG478100
rosa_wichuraiana Rw6G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 66
Acc36I ACCTGC 2 cut(s) 305, 385
AciI CCGC 4 cut(s) 35, 134, 263, 377
AcoI YGGCCR 1 cut(s) 52
AcyI GRCGYC 1 cut(s) 63
AfaI GTAC 1 cut(s) 209
AfiI CCNNNNNNNGG 2 cut(s) 133, 338
AgsI TTSAA 1 cut(s) 131
AjnI CCWGG 1 cut(s) 120
AluBI AGCT 5 cut(s) 97, 205, 251, 284, 429
AluI AGCT 5 cut(s) 97, 205, 251, 284, 429
Alw21I GWGCWC 2 cut(s) 199, 483
Alw26I GTCTC 2 cut(s) 23, 93
AoxI GGCC 3 cut(s) 38, 52, 123
ApeKI GCWGC 3 cut(s) 233, 236, 311
AspS9I GGNCC 4 cut(s) 38, 124, 329, 347
AsuII TTCGAA 1 cut(s) 293
AvaII GGWCC 2 cut(s) 329, 347
BauI CACGAG 1 cut(s) 198
BbsI GAAGAC 1 cut(s) 302
Bbv12I GWGCWC 2 cut(s) 199, 483
BbvI GCAGC 3 cut(s) 220, 223, 323
BccI CCATC 2 cut(s) 19, 413
BceAI ACGGC 2 cut(s) 25, 48
BcgI CGANNNNNNTGC 2 cut(s) 179, 213
BciT130I CCWGG 1 cut(s) 122
BclI TGATCA 2 cut(s) 241, 355
BcoDI GTCTC 2 cut(s) 23, 93
BfaI CTAG 1 cut(s) 248
BfuAI ACCTGC 2 cut(s) 305, 385
BisI GCNGC 3 cut(s) 234, 237, 312
BlsI GCNGC 3 cut(s) 235, 238, 313
Bme1390I CCNGG 1 cut(s) 122
Bme18I GGWCC 2 cut(s) 329, 347
BmgT120I GGNCC 4 cut(s) 38, 124, 329, 347
BmiI GGNNCC 1 cut(s) 39
BmrFI CCNGG 1 cut(s) 122
BmsI GCATC 3 cut(s) 199, 381, 397
BpiI GAAGAC 1 cut(s) 302
Bpu14I TTCGAA 1 cut(s) 293
BsaHI GRCGYC 1 cut(s) 63
BsaJI CCNNGG 2 cut(s) 55, 120
BsaXI ACNNNNNCTCC 2 cut(s) 441, 471
Bsc4I CCNNNNNNNGG 2 cut(s) 133, 338
Bse118I RCCGGY 1 cut(s) 50
Bse1I ACTGG 3 cut(s) 378, 388, 497
Bse3DI GCAATG 1 cut(s) 153
BseBI CCWGG 1 cut(s) 122
BseDI CCNNGG 2 cut(s) 55, 120
BseGI GGATG 3 cut(s) 286, 396, 412
BseLI CCNNNNNNNGG 2 cut(s) 133, 338
BseMI GCAATG 1 cut(s) 153
BseNI ACTGG 3 cut(s) 378, 388, 497
BseXI GCAGC 3 cut(s) 220, 223, 323
BshFI GGCC 3 cut(s) 40, 54, 125
BsiHKAI GWGCWC 2 cut(s) 199, 483
BsiSI CCGG 1 cut(s) 51
BslFI GGGAC 1 cut(s) 86
BslI CCNNNNNNNGG 2 cut(s) 133, 338
BsmAI GTCTC 2 cut(s) 23, 93
BsmBI CGTCTC 1 cut(s) 23
BsmFI GGGAC 1 cut(s) 86
BsnI GGCC 3 cut(s) 40, 54, 125
Bsp119I TTCGAA 1 cut(s) 293
Bsp1286I GDGCHC 2 cut(s) 199, 483
Bsp1407I TGTACA 1 cut(s) 207
Bsp143I GATC 2 cut(s) 241, 355
BspACI CCGC 4 cut(s) 35, 134, 263, 377
BspANI GGCC 3 cut(s) 40, 54, 125
BspLI GGNNCC 1 cut(s) 39
BspMI ACCTGC 2 cut(s) 305, 385
BspT104I TTCGAA 1 cut(s) 293
BsrDI GCAATG 1 cut(s) 153
BsrFI RCCGGY 1 cut(s) 50
BsrGI TGTACA 1 cut(s) 207
BsrI ACTGG 3 cut(s) 378, 388, 497
BssAI RCCGGY 1 cut(s) 50
BssECI CCNNGG 2 cut(s) 55, 120
BssMI GATC 2 cut(s) 241, 355
BssNI GRCGYC 1 cut(s) 63
BssSI CACGAG 1 cut(s) 198
BssT1I CCWWGG 1 cut(s) 55
Bst2BI CACGAG 1 cut(s) 198
Bst2UI CCWGG 1 cut(s) 122
Bst4CI ACNGT 1 cut(s) 444
Bst6I CTCTTC 1 cut(s) 162
BstACI GRCGYC 1 cut(s) 63
BstAUI TGTACA 1 cut(s) 207
BstBI TTCGAA 1 cut(s) 293
BstC8I GCNNGC 2 cut(s) 95, 113
BstF5I GGATG 3 cut(s) 286, 396, 412
BstKTI GATC 2 cut(s) 244, 358
BstMAI GTCTC 2 cut(s) 23, 93
BstMBI GATC 2 cut(s) 241, 355
BstMWI GCNNNNNNNGC 3 cut(s) 131, 269, 468
BstNI CCWGG 1 cut(s) 122
BstSCI CCNGG 1 cut(s) 120
BstV1I GCAGC 3 cut(s) 220, 223, 323
BstV2I GAAGAC 1 cut(s) 302
BsuRI GGCC 3 cut(s) 40, 54, 125
BtgZI GCGATG 1 cut(s) 452
BtsCI GGATG 3 cut(s) 286, 396, 412
BtsIMutI CAGTG 1 cut(s) 449
BveI ACCTGC 2 cut(s) 305, 385
Cac8I GCNNGC 2 cut(s) 95, 113
Cfr10I RCCGGY 1 cut(s) 50
Cfr13I GGNCC 4 cut(s) 38, 124, 329, 347
Csp6I GTAC 1 cut(s) 208
CviQI GTAC 1 cut(s) 208
DpnI GATC 2 cut(s) 243, 357
DpnII GATC 2 cut(s) 241, 355
EaeI YGGCCR 1 cut(s) 52
Eam1104I CTCTTC 1 cut(s) 162
EarI CTCTTC 1 cut(s) 162
EciI GGCGGA 1 cut(s) 392
Eco130I CCWWGG 1 cut(s) 55
Eco47I GGWCC 2 cut(s) 329, 347
EcoO109I RGGNCCY 1 cut(s) 124
EcoRII CCWGG 1 cut(s) 120
EcoT14I CCWWGG 1 cut(s) 55
EcoT22I ATGCAT 1 cut(s) 412
ErhI CCWWGG 1 cut(s) 55
Esp3I CGTCTC 1 cut(s) 23
FaiI YATR 4 cut(s) 9, 143, 371, 490
FaqI GGGAC 1 cut(s) 86
FauI CCCGC 1 cut(s) 28
FbaI TGATCA 2 cut(s) 241, 355
Fnu4HI GCNGC 3 cut(s) 234, 237, 312
FokI GGATG 3 cut(s) 273, 403, 419
Fsp4HI GCNGC 3 cut(s) 234, 237, 312
FspBI CTAG 1 cut(s) 248
GluI GCNGC 3 cut(s) 234, 237, 312
HaeIII GGCC 3 cut(s) 40, 54, 125
HapII CCGG 1 cut(s) 51
Hin1I GRCGYC 1 cut(s) 63
HpaII CCGG 1 cut(s) 51
Hpy166II GTNNAC 1 cut(s) 440
Hpy188I TCNGA 1 cut(s) 418
Hpy188III TCNNGA 1 cut(s) 200
Hpy8I GTNNAC 1 cut(s) 440
Hpy99I CGWCG 2 cut(s) 65, 68
HpyAV CCTTC 3 cut(s) 126, 137, 300
HpyCH4III ACNGT 1 cut(s) 444
HpyCH4IV ACGT 2 cut(s) 63, 321
HpyCH4V TGCA 5 cut(s) 190, 223, 272, 394, 410
HpyF10VI GCNNNNNNNGC 3 cut(s) 131, 269, 468
HpySE526I ACGT 2 cut(s) 63, 321
Hsp92I GRCGYC 1 cut(s) 63
Ksp22I TGATCA 2 cut(s) 241, 355
Kzo9I GATC 2 cut(s) 241, 355
LmnI GCTCC 1 cut(s) 102
Lsp1109I GCAGC 3 cut(s) 220, 223, 323
LweI GCATC 3 cut(s) 199, 381, 397
MaeI CTAG 1 cut(s) 248
MaeII ACGT 2 cut(s) 63, 321
MaeIII GTNAC 1 cut(s) 317
MalI GATC 2 cut(s) 243, 357
MboI GATC 2 cut(s) 241, 355
MboII GAAGA 2 cut(s) 179, 307
MfeI CAATTG 1 cut(s) 273
MhlI GDGCHC 2 cut(s) 199, 483
MluCI AATT 1 cut(s) 273
MmeI TCCRAC 2 cut(s) 69, 384
MnlI CCTC 2 cut(s) 163, 443
Mph1103I ATGCAT 1 cut(s) 412
MseI TTAA 1 cut(s) 102
MslI CAYNNNNRTG 2 cut(s) 20, 493
MspI CCGG 1 cut(s) 51
MspR9I CCNGG 1 cut(s) 122
MunI CAATTG 1 cut(s) 273
MvaI CCWGG 1 cut(s) 122
MwoI GCNNNNNNNGC 3 cut(s) 131, 269, 468
NdeII GATC 2 cut(s) 241, 355
NlaIV GGNNCC 1 cut(s) 39
NsiI ATGCAT 1 cut(s) 412
NspV TTCGAA 1 cut(s) 293
PcsI WCGNNNNNNNCGW 1 cut(s) 38
PflFI GACNNNGTC 1 cut(s) 65
PkrI GCNGC 3 cut(s) 235, 238, 313
Psp6I CCWGG 1 cut(s) 120
PspGI CCWGG 1 cut(s) 120
PspN4I GGNNCC 1 cut(s) 39
PspPI GGNCC 4 cut(s) 38, 124, 329, 347
PsyI GACNNNGTC 1 cut(s) 65
RsaI GTAC 1 cut(s) 209
RsaNI GTAC 1 cut(s) 208
RseI CAYNNNNRTG 2 cut(s) 20, 493
SaqAI TTAA 1 cut(s) 102
SatI GCNGC 3 cut(s) 234, 237, 312
Sau3AI GATC 2 cut(s) 241, 355
Sau96I GGNCC 4 cut(s) 38, 124, 329, 347
ScrFI CCNGG 1 cut(s) 122
SduI GDGCHC 2 cut(s) 199, 483
SfaNI GCATC 3 cut(s) 199, 381, 397
SfuI TTCGAA 1 cut(s) 293
SinI GGWCC 2 cut(s) 329, 347
SmiMI CAYNNNNRTG 2 cut(s) 20, 493
Sse9I AATT 1 cut(s) 273
SsiI CCGC 4 cut(s) 35, 134, 263, 377
SspMI CTAG 1 cut(s) 248
StyD4I CCNGG 1 cut(s) 120
StyI CCWWGG 1 cut(s) 55
TaaI ACNGT 1 cut(s) 444
TaiI ACGT 2 cut(s) 66, 324
TaqI TCGA 1 cut(s) 293
TasI AATT 1 cut(s) 273
TatI WGTACW 1 cut(s) 207
Tru1I TTAA 1 cut(s) 102
Tru9I TTAA 1 cut(s) 102
TscAI CASTG 1 cut(s) 449
TseI GCWGC 3 cut(s) 233, 236, 311
TspDTI ATGAA 2 cut(s) 17, 421
TspGWI ACGGA 3 cut(s) 26, 32, 321
TspRI CASTG 1 cut(s) 449
Tth111I GACNNNGTC 1 cut(s) 65
VpaK11BI GGWCC 2 cut(s) 329, 347
XspI CTAG 1 cut(s) 248
ZraI GACGTC 1 cut(s) 64
Zsp2I ATGCAT 1 cut(s) 412
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.