Rorug06G0367000
NAC Family

inactive receptor kinase

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_rugosa
GWHBQTZ00000006
OG0010893
Physical Location & Seq
Forward (+)
51437882 .. 51439832
1951 bp
Loading structure...
UTR
Exon/CDS
Intron
Rorug06G0367000.1

Sequence Viewer

Length: 687 bp
ATGCCAGCTTCAAGTTCATTTCTGGGGCAGATGAGTGTTAGGGAGGCTTGGAAATCAACTTCAAGAAGGTGGGGAGGTGGGAATAACAATCCTTGTGGTGGCAACAGTGGTGGTGCAACTCCACACTCTGAGGGAAGCTTCAAGAAGCAAATGGAAGGGTTTAGCAACATGTATGGTAGCGGTGGTTATGGTTATGGTGAGAATGCAACAGTGAGGAAGAGAGTCATGGTCGTGGTGGATGACTCATCTCATTCCAAACATGCAATGATGTGGGCTCTCACTCATGTTGCCAACAAGGGTGATTTGCTTACTCTTCTTCACATCATGCCTTCTAGTTCACATAGGGACTCTTCTGCTGGTTCTCCATACCTTGCAAACTCTCTTGGGTCTCTTTGCAAGGCTTGCAAGCCTGAGGTTGAAGTGGAAGCACTTGTGATCCAAGGACCTAGACTAGCCACGGTGATAAGCCAAGTGAAGAAGCTAGAGGTCTCAGTCCTAGTTCTGGGTCAGAAGAAAGCTTCTCCCCTCATTAGCTGCTTATATGGAACAAGCAGAACTGAGGAGTTTGTGGAACATTGCATCAACAATGCAGATTGCTTGACTATTGGAGTCAGGAAGCAAAGCAAAGGTGTGGGTGGCTATCTCATCAACACTAGATGGCAGAAGGATTTCTGGCTCTTGGCCTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
GO:0005575 GO:0005623 GO:0005886 GO:0016020 GO:0044464 GO:0071944
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
LRRNT_2 LRR_1 LRR_8 Pkinase Pkinase_Tyr

Protein Analysis

228

Amino Acids

24.6

Weight (kDa)

9.25

Isoelectric Point (pI)

48.81

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
Usp PF00582 73 - 182 7.8e-10 Universal stress protein family
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47830 AT5G47830
fragaria_vesca FvH4_2g33950
malus_domestica MD06G1210300.v1.1 MD08G1095400.v1.1 MD15G1077900.v1.1 MD17G1062600.v1.1
prunus_persica Prupe.1G431400_v2.0.a1
pyrus_communis pycom15g07260
rosa_chinensis RchiOBHm_Chr6g0308461
rosa_laevigata RLG00000010641
rosa_multiflora Rmu_co8427491.1_g000001 Rmu_sc0011796.1_g000007
rosa_roxburghii Rroxscaffold_7G00160110
rosa_rugosa Rorug06G0367000
rosa_samantha Rh6AG476700 Rh6BG486900 Rh6CG492000 Rh6DG478100
rosa_wichuraiana Rw6G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AciI CCGC 1 cut(s) 180
AclWI GGATC 1 cut(s) 430
AfiI CCNNNNNNNGG 2 cut(s) 98, 502
AflIII ACRYGT 1 cut(s) 168
AgsI TTSAA 4 cut(s) 12, 63, 142, 419
AluBI AGCT 5 cut(s) 8, 138, 481, 518, 534
AluI AGCT 5 cut(s) 8, 138, 481, 518, 534
Alw26I GTCTC 2 cut(s) 393, 493
AlwI GGATC 1 cut(s) 430
AoxI GGCC 1 cut(s) 681
ApeKI GCWGC 1 cut(s) 534
Asp700I GAANNNNTTC 1 cut(s) 668
AspS9I GGNCC 1 cut(s) 443
AsuHPI GGTGA 3 cut(s) 209, 311, 472
AvaII GGWCC 1 cut(s) 443
AxyI CCTNAGG 1 cut(s) 411
BanII GRGCYC 1 cut(s) 277
BbvI GCAGC 1 cut(s) 521
BccI CCATC 1 cut(s) 651
BcoDI GTCTC 2 cut(s) 393, 493
BfaI CTAG 7 cut(s) 333, 447, 452, 482, 497, 654, 685
BisI GCNGC 1 cut(s) 535
BlsI GCNGC 1 cut(s) 536
Bme18I GGWCC 1 cut(s) 443
BmgT120I GGNCC 1 cut(s) 443
BmsI GCATC 1 cut(s) 588
BsaI GGTCTC 2 cut(s) 393, 493
BsaJI CCNNGG 2 cut(s) 439, 456
Bsc4I CCNNNNNNNGG 2 cut(s) 98, 502
Bse21I CCTNAGG 1 cut(s) 411
Bse3DI GCAATG 2 cut(s) 270, 574
BseDI CCNNGG 2 cut(s) 439, 456
BseGI GGATG 1 cut(s) 244
BseLI CCNNNNNNNGG 2 cut(s) 98, 502
BseMI GCAATG 2 cut(s) 270, 574
BseMII CTCAG 4 cut(s) 120, 402, 504, 549
BseRI GAGGAG 1 cut(s) 575
BseXI GCAGC 1 cut(s) 521
BshFI GGCC 1 cut(s) 683
BslFI GGGAC 1 cut(s) 359
BslI CCNNNNNNNGG 2 cut(s) 98, 502
BsmAI GTCTC 2 cut(s) 393, 493
BsmFI GGGAC 1 cut(s) 359
BsmI GAATGC 1 cut(s) 208
BsnI GGCC 1 cut(s) 683
Bso31I GGTCTC 2 cut(s) 393, 493
Bsp1286I GDGCHC 1 cut(s) 277
Bsp143I GATC 1 cut(s) 435
BspACI CCGC 1 cut(s) 180
BspANI GGCC 1 cut(s) 683
BspCNI CTCAG 4 cut(s) 121, 403, 503, 550
BspPI GGATC 1 cut(s) 430
BspTNI GGTCTC 2 cut(s) 393, 493
BsrDI GCAATG 2 cut(s) 270, 574
BssECI CCNNGG 2 cut(s) 439, 456
BssMI GATC 1 cut(s) 435
BssT1I CCWWGG 1 cut(s) 439
Bst4CI ACNGT 3 cut(s) 107, 211, 460
Bst6I CTCTTC 3 cut(s) 212, 318, 355
BstAPI GCANNNNNTGC 1 cut(s) 402
BstC8I GCNNGC 3 cut(s) 6, 403, 407
BstDEI CTNAG 4 cut(s) 129, 411, 490, 558
BstDSI CCRYGG 1 cut(s) 456
BstF5I GGATG 1 cut(s) 244
BstKTI GATC 1 cut(s) 438
BstMAI GTCTC 2 cut(s) 393, 493
BstMBI GATC 1 cut(s) 435
BstMWI GCNNNNNNNGC 1 cut(s) 402
BstNSI RCATGY 2 cut(s) 172, 263
BstV1I GCAGC 1 cut(s) 521
Bsu36I CCTNAGG 1 cut(s) 411
BsuRI GGCC 1 cut(s) 683
BtgI CCRYGG 1 cut(s) 456
BtsCI GGATG 1 cut(s) 244
BtsIMutI CAGTG 2 cut(s) 112, 216
Cac8I GCNNGC 3 cut(s) 6, 403, 407
Cfr13I GGNCC 1 cut(s) 443
CspCI CAANNNNNGTGG 4 cut(s) 76, 91, 111, 126
CviAII CATG 5 cut(s) 169, 226, 260, 284, 325
DdeI CTNAG 4 cut(s) 129, 411, 490, 558
DpnI GATC 1 cut(s) 437
DpnII GATC 1 cut(s) 435
Eam1104I CTCTTC 3 cut(s) 212, 318, 355
EarI CTCTTC 3 cut(s) 212, 318, 355
Eco130I CCWWGG 1 cut(s) 439
Eco24I GRGCYC 1 cut(s) 277
Eco31I GGTCTC 2 cut(s) 393, 493
Eco47I GGWCC 1 cut(s) 443
Eco81I CCTNAGG 1 cut(s) 411
EcoO109I RGGNCCY 1 cut(s) 443
EcoT14I CCWWGG 1 cut(s) 439
EcoT38I GRGCYC 1 cut(s) 277
ErhI CCWWGG 1 cut(s) 439
FaeI CATG 5 cut(s) 172, 229, 263, 287, 328
FaqI GGGAC 1 cut(s) 359
FatI CATG 5 cut(s) 168, 225, 259, 283, 324
Fnu4HI GCNGC 1 cut(s) 535
FokI GGATG 1 cut(s) 251
FriOI GRGCYC 1 cut(s) 277
Fsp4HI GCNGC 1 cut(s) 535
FspBI CTAG 7 cut(s) 333, 447, 452, 482, 497, 654, 685
GluI GCNGC 1 cut(s) 535
HaeIII GGCC 1 cut(s) 683
Hin1II CATG 5 cut(s) 172, 229, 263, 287, 328
HindIII AAGCTT 2 cut(s) 136, 516
HinfI GANTC 4 cut(s) 222, 242, 347, 609
HphI GGTGA 3 cut(s) 209, 311, 472
Hpy166II GTNNAC 1 cut(s) 338
Hpy188I TCNGA 2 cut(s) 130, 510
Hpy188III TCNNGA 3 cut(s) 63, 142, 613
Hpy8I GTNNAC 1 cut(s) 338
HpyAV CCTTC 4 cut(s) 60, 149, 339, 658
HpyCH4III ACNGT 3 cut(s) 107, 211, 460
HpyCH4V TGCA 8 cut(s) 116, 206, 263, 374, 396, 405, 579, 590
HpyF10VI GCNNNNNNNGC 1 cut(s) 402
HpyF3I CTNAG 4 cut(s) 129, 411, 490, 558
Hsp92II CATG 5 cut(s) 172, 229, 263, 287, 328
Kzo9I GATC 1 cut(s) 435
LpnPI CCDG 7 cut(s) 8, 18, 342, 423, 488, 598, 658
Lsp1109I GCAGC 1 cut(s) 521
LweI GCATC 1 cut(s) 588
MaeI CTAG 7 cut(s) 333, 447, 452, 482, 497, 654, 685
MalI GATC 1 cut(s) 437
MboI GATC 1 cut(s) 435
MboII GAAGA 6 cut(s) 229, 305, 308, 342, 487, 523
MhlI GDGCHC 1 cut(s) 277
MlyI GAGTC 4 cut(s) 231, 236, 341, 618
MnlI CCTC 8 cut(s) 37, 68, 124, 207, 406, 478, 536, 553
MroXI GAANNNNTTC 1 cut(s) 668
MslI CAYNNNNRTG 1 cut(s) 230
Mva1269I GAATGC 1 cut(s) 208
MwoI GCNNNNNNNGC 1 cut(s) 402
NdeII GATC 1 cut(s) 435
NlaIII CATG 5 cut(s) 172, 229, 263, 287, 328
NspI RCATGY 2 cut(s) 172, 263
PciI ACATGT 1 cut(s) 168
PctI GAATGC 1 cut(s) 208
PdmI GAANNNNTTC 1 cut(s) 668
PkrI GCNGC 1 cut(s) 536
PleI GAGTC 4 cut(s) 230, 236, 341, 617
PpsI GAGTC 4 cut(s) 230, 236, 341, 617
PpuMI RGGWCCY 1 cut(s) 443
PscI ACATGT 1 cut(s) 168
Psp5II RGGWCCY 1 cut(s) 443
PspPI GGNCC 1 cut(s) 443
PspPPI RGGWCCY 1 cut(s) 443
RseI CAYNNNNRTG 1 cut(s) 230
SatI GCNGC 1 cut(s) 535
Sau3AI GATC 1 cut(s) 435
Sau96I GGNCC 1 cut(s) 443
SchI GAGTC 4 cut(s) 231, 236, 341, 618
SduI GDGCHC 1 cut(s) 277
SfaNI GCATC 1 cut(s) 588
SinI GGWCC 1 cut(s) 443
SmiMI CAYNNNNRTG 1 cut(s) 230
SsiI CCGC 1 cut(s) 180
SspMI CTAG 7 cut(s) 333, 447, 452, 482, 497, 654, 685
StyI CCWWGG 1 cut(s) 439
TaaI ACNGT 3 cut(s) 107, 211, 460
TscAI CASTG 2 cut(s) 112, 216
TseI GCWGC 1 cut(s) 534
TspDTI ATGAA 1 cut(s) 6
TspRI CASTG 2 cut(s) 112, 216
VpaK11BI GGWCC 1 cut(s) 443
XceI RCATGY 2 cut(s) 172, 263
XmnI GAANNNNTTC 1 cut(s) 668
XspI CTAG 7 cut(s) 333, 447, 452, 482, 497, 654, 685
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.