MD06G1210300.v1.1

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr06
OG0010893
Physical Location & Seq
Forward (+)
34321672 .. 34321944
273 bp
Loading structure...
UTR
Exon/CDS
Intron
MD06G1210300.v1.1.491

Sequence Viewer

Length: 273 bp
ATGAACCATACGGATATGGAAATGATGGAGGTGGAGACGACGGCGGCTGGGCGGCCGGAGCTGCCGTCCAGCATCGGCCAAGGTGACGTCGCCAGGGACTTGCTCACATTGTCTCGCCAGCTCCTCAATCAAGGCAAGCCTTCCCAGGCCCTCAAAGCGGTTGTTATGGCAATGAGAACAAGAGGTGGGGACGAGGCTGTATTTCAGTCCTTGCATCGTGCTCGTGAGCTGTACAGAAATAGATTGCAAGAAAGCTCTCTGCTGATCAACTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

91

Amino Acids

10.04

Weight (kDa)

6.73

Isoelectric Point (pI)

39.6

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47830 AT5G47830
fragaria_vesca FvH4_2g33950
malus_domestica MD06G1210300.v1.1 MD08G1095400.v1.1 MD15G1077900.v1.1 MD17G1062600.v1.1
prunus_persica Prupe.1G431400_v2.0.a1
pyrus_communis pycom15g07260
rosa_chinensis RchiOBHm_Chr6g0308461
rosa_laevigata RLG00000010641
rosa_multiflora Rmu_co8427491.1_g000001 Rmu_sc0011796.1_g000007
rosa_roxburghii Rroxscaffold_7G00160110
rosa_rugosa Rorug06G0367000
rosa_samantha Rh6AG476700 Rh6BG486900 Rh6CG492000 Rh6DG478100
rosa_wichuraiana Rw6G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 90
AciI CCGC 3 cut(s) 44, 52, 158
AcoI YGGCCR 2 cut(s) 53, 76
AcyI GRCGYC 1 cut(s) 87
AfaI GTAC 1 cut(s) 233
AfiI CCNNNNNNNGG 1 cut(s) 157
AjnI CCWGG 2 cut(s) 92, 144
AluBI AGCT 4 cut(s) 61, 121, 229, 255
AluI AGCT 4 cut(s) 61, 121, 229, 255
Alw21I GWGCWC 1 cut(s) 223
Alw26I GTCTC 2 cut(s) 29, 117
AoxI GGCC 3 cut(s) 53, 76, 147
ApeKI GCWGC 1 cut(s) 61
AspS9I GGNCC 1 cut(s) 148
AsuHPI GGTGA 1 cut(s) 95
BauI CACGAG 1 cut(s) 222
Bbv12I GWGCWC 1 cut(s) 223
BbvI GCAGC 1 cut(s) 48
BccI CCATC 1 cut(s) 19
BceAI ACGGC 2 cut(s) 49, 57
BcgI CGANNNNNNTGC 2 cut(s) 203, 237
BciT130I CCWGG 2 cut(s) 94, 146
BclI TGATCA 1 cut(s) 264
BcoDI GTCTC 2 cut(s) 29, 117
BfaI CTAG 1 cut(s) 271
BisI GCNGC 3 cut(s) 45, 53, 62
BlsI GCNGC 3 cut(s) 46, 54, 63
Bme1390I CCNGG 2 cut(s) 94, 146
BmgT120I GGNCC 1 cut(s) 148
BmrFI CCNGG 2 cut(s) 94, 146
BmsI GCATC 2 cut(s) 81, 223
BsaHI GRCGYC 1 cut(s) 87
BsaJI CCNNGG 3 cut(s) 79, 93, 144
BsaXI ACNNNNNCTCC 2 cut(s) 50, 80
Bsc4I CCNNNNNNNGG 1 cut(s) 157
Bse3DI GCAATG 1 cut(s) 177
BseBI CCWGG 2 cut(s) 94, 146
BseDI CCNNGG 3 cut(s) 79, 93, 144
BseLI CCNNNNNNNGG 1 cut(s) 157
BseMI GCAATG 1 cut(s) 177
BseRI GAGGAG 1 cut(s) 113
BseX3I CGGCCG 1 cut(s) 53
BseXI GCAGC 1 cut(s) 48
BseYI CCCAGC 1 cut(s) 47
Bsh1285I CGRYCG 1 cut(s) 56
BshFI GGCC 3 cut(s) 55, 78, 149
BsiEI CGRYCG 1 cut(s) 56
BsiHKAI GWGCWC 1 cut(s) 223
BsiSI CCGG 1 cut(s) 56
BslFI GGGAC 2 cut(s) 110, 203
BslI CCNNNNNNNGG 1 cut(s) 157
BsmAI GTCTC 2 cut(s) 29, 117
BsmBI CGTCTC 1 cut(s) 29
BsmFI GGGAC 2 cut(s) 110, 203
BsnI GGCC 3 cut(s) 55, 78, 149
Bsp1286I GDGCHC 1 cut(s) 223
Bsp1407I TGTACA 1 cut(s) 231
Bsp143I GATC 1 cut(s) 264
BspACI CCGC 3 cut(s) 44, 52, 158
BspANI GGCC 3 cut(s) 55, 78, 149
BsrDI GCAATG 1 cut(s) 177
BsrGI TGTACA 1 cut(s) 231
BssECI CCNNGG 3 cut(s) 79, 93, 144
BssMI GATC 1 cut(s) 264
BssNI GRCGYC 1 cut(s) 87
BssSI CACGAG 1 cut(s) 222
BssT1I CCWWGG 1 cut(s) 79
Bst2BI CACGAG 1 cut(s) 222
Bst2UI CCWGG 2 cut(s) 94, 146
BstACI GRCGYC 1 cut(s) 87
BstAUI TGTACA 1 cut(s) 231
BstC8I GCNNGC 2 cut(s) 119, 137
BstKTI GATC 1 cut(s) 267
BstMAI GTCTC 2 cut(s) 29, 117
BstMBI GATC 1 cut(s) 264
BstMCI CGRYCG 1 cut(s) 56
BstMWI GCNNNNNNNGC 3 cut(s) 58, 61, 155
BstNI CCWGG 2 cut(s) 94, 146
BstSCI CCNGG 2 cut(s) 92, 144
BstV1I GCAGC 1 cut(s) 48
BstZI CGGCCG 1 cut(s) 53
BsuRI GGCC 3 cut(s) 55, 78, 149
Cac8I GCNNGC 2 cut(s) 119, 137
Cfr13I GGNCC 1 cut(s) 148
Csp6I GTAC 1 cut(s) 232
CviQI GTAC 1 cut(s) 232
DpnI GATC 1 cut(s) 266
DpnII GATC 1 cut(s) 264
EaeI YGGCCR 2 cut(s) 53, 76
EagI CGGCCG 1 cut(s) 53
EclXI CGGCCG 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 79
Eco52I CGGCCG 1 cut(s) 53
EcoO109I RGGNCCY 1 cut(s) 148
EcoRII CCWGG 2 cut(s) 92, 144
EcoT14I CCWWGG 1 cut(s) 79
ErhI CCWWGG 1 cut(s) 79
Esp3I CGTCTC 1 cut(s) 29
FaiI YATR 3 cut(s) 9, 17, 167
FaqI GGGAC 2 cut(s) 110, 203
FbaI TGATCA 1 cut(s) 264
Fnu4HI GCNGC 3 cut(s) 45, 53, 62
Fsp4HI GCNGC 3 cut(s) 45, 53, 62
FspBI CTAG 1 cut(s) 271
GluI GCNGC 3 cut(s) 45, 53, 62
GsaI CCCAGC 1 cut(s) 51
HaeIII GGCC 3 cut(s) 55, 78, 149
HapII CCGG 1 cut(s) 56
Hin1I GRCGYC 1 cut(s) 87
HpaII CCGG 1 cut(s) 56
HphI GGTGA 1 cut(s) 95
Hpy188III TCNNGA 1 cut(s) 224
Hpy99I CGWCG 2 cut(s) 43, 92
HpyAV CCTTC 1 cut(s) 150
HpyCH4IV ACGT 1 cut(s) 87
HpyCH4V TGCA 2 cut(s) 214, 247
HpyF10VI GCNNNNNNNGC 3 cut(s) 58, 61, 155
HpySE526I ACGT 1 cut(s) 87
Hsp92I GRCGYC 1 cut(s) 87
Ksp22I TGATCA 1 cut(s) 264
Kzo9I GATC 1 cut(s) 264
LmnI GCTCC 2 cut(s) 58, 126
LpnPI CCDG 8 cut(s) 33, 69, 79, 82, 106, 131, 131, 158
Lsp1109I GCAGC 1 cut(s) 48
LweI GCATC 2 cut(s) 81, 223
MaeI CTAG 1 cut(s) 271
MaeII ACGT 1 cut(s) 87
MaeIII GTNAC 1 cut(s) 83
MalI GATC 1 cut(s) 266
MboI GATC 1 cut(s) 264
MhlI GDGCHC 1 cut(s) 223
MnlI CCTC 5 cut(s) 22, 134, 161, 176, 187
MspI CCGG 1 cut(s) 56
MspR9I CCNGG 2 cut(s) 94, 146
MvaI CCWGG 2 cut(s) 94, 146
MwoI GCNNNNNNNGC 3 cut(s) 58, 61, 155
NdeII GATC 1 cut(s) 264
NmuCI GTSAC 1 cut(s) 83
PkrI GCNGC 3 cut(s) 46, 54, 63
Psp6I CCWGG 2 cut(s) 92, 144
PspFI CCCAGC 1 cut(s) 47
PspGI CCWGG 2 cut(s) 92, 144
PspPI GGNCC 1 cut(s) 148
RsaI GTAC 1 cut(s) 233
RsaNI GTAC 1 cut(s) 232
SatI GCNGC 3 cut(s) 45, 53, 62
Sau3AI GATC 1 cut(s) 264
Sau96I GGNCC 1 cut(s) 148
ScrFI CCNGG 2 cut(s) 94, 146
SduI GDGCHC 1 cut(s) 223
SetI ASST 8 cut(s) 33, 63, 85, 90, 123, 187, 231, 257
SfaNI GCATC 2 cut(s) 81, 223
SsiI CCGC 3 cut(s) 44, 52, 158
SspMI CTAG 1 cut(s) 271
StyD4I CCNGG 2 cut(s) 92, 144
StyI CCWWGG 1 cut(s) 79
TaiI ACGT 1 cut(s) 90
TatI WGTACW 1 cut(s) 231
TauI GCSGC 2 cut(s) 47, 55
TseFI GTSAC 1 cut(s) 83
TseI GCWGC 1 cut(s) 61
Tsp45I GTSAC 1 cut(s) 83
TspDTI ATGAA 1 cut(s) 17
TspGWI ACGGA 1 cut(s) 26
XspI CTAG 1 cut(s) 271
ZraI GACGTC 1 cut(s) 88
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.