Rroxscaffold_7G00160110

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0010893
Physical Location & Seq
Forward (+)
3122742 .. 3124623
1882 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00160110.1

Sequence Viewer

Length: 537 bp
ATGGAGCGTACGCACACAGAGATGATGGGGACGGAGATGGAGGTGGACACCGCCGTGACTGGGCGGCCGGAGCCGCCGCCTAATACCGGCCAAAGTGACGTCGTCAGGGACCTGCTCACATTGGCTCGCCAGCTCGTCGGTGAAGGCAAGCCTACTCAGGCCCTCCAAGCGGTTATTATGGCATCAAGAACCAGAGGTGGGGATGAGGCTGTTGTTCAGTCCTTGGAACGTGCTCGTGAGCTATACAGATGTAGATTGCAAGAAAGCACTGCTGTTGATCAGTTAGCCTCTTTGTTTGCCGAGTGTGCAATTGATGAAGCTCAGCCTTCAAAACCTGAATCATCAGCACATAACGTGAGTGGCCCGTCAGCTGGACCTGATGCTCATGGAACTTCTATACTGGCGGAAAGTGGCAGGATGCAGATTGTGCTGGATGCATTTTCAGATGGGAGCAGCTTCATTTGCTTACAGTGTGGAGGTCTTGTTAGCAATCATCGCAAAGACGAGCACTATGCCTACTGGTGTTGCCAAATTTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

178

Amino Acids

19.24

Weight (kDa)

4.88

Isoelectric Point (pI)

37.79

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
zf-C2HC_3 PF25017 131 - 176 4.6e-26 C2HC zinc finger
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0010893)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G47830 AT5G47830
fragaria_vesca FvH4_2g33950
malus_domestica MD06G1210300.v1.1 MD08G1095400.v1.1 MD15G1077900.v1.1 MD17G1062600.v1.1
prunus_persica Prupe.1G431400_v2.0.a1
pyrus_communis pycom15g07260
rosa_chinensis RchiOBHm_Chr6g0308461
rosa_laevigata RLG00000010641
rosa_multiflora Rmu_co8427491.1_g000001 Rmu_sc0011796.1_g000007
rosa_roxburghii Rroxscaffold_7G00160110
rosa_rugosa Rorug06G0367000
rosa_samantha Rh6AG476700 Rh6BG486900 Rh6CG492000 Rh6DG478100
rosa_wichuraiana Rw6G041580

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 102
Acc36I ACCTGC 1 cut(s) 120
AciI CCGC 6 cut(s) 51, 64, 74, 77, 170, 404
AcoI YGGCCR 2 cut(s) 65, 88
AcsI RAATTY 1 cut(s) 531
AcyI GRCGYC 1 cut(s) 99
AfaI GTAC 1 cut(s) 10
AfiI CCNNNNNNNGG 5 cut(s) 60, 86, 169, 198, 371
AgsI TTSAA 1 cut(s) 330
AleI CACNNNNGTG 1 cut(s) 53
AluBI AGCT 5 cut(s) 133, 241, 320, 371, 456
AluI AGCT 5 cut(s) 133, 241, 320, 371, 456
Alw21I GWGCWC 2 cut(s) 235, 510
AoxI GGCC 4 cut(s) 65, 88, 159, 361
ApeKI GCWGC 1 cut(s) 453
ApoI RAATTY 1 cut(s) 531
AspS9I GGNCC 4 cut(s) 109, 160, 362, 374
AsuHPI GGTGA 1 cut(s) 152
AvaII GGWCC 2 cut(s) 109, 374
BauI CACGAG 1 cut(s) 234
Bbv12I GWGCWC 2 cut(s) 235, 510
BbvI GCAGC 1 cut(s) 465
BccI CCATC 3 cut(s) 19, 31, 440
BceAI ACGGC 1 cut(s) 38
BcgI CGANNNNNNTGC 2 cut(s) 494, 528
BclI TGATCA 1 cut(s) 277
BfuAI ACCTGC 1 cut(s) 120
BisI GCNGC 4 cut(s) 65, 74, 77, 454
BlpI GCTNAGC 1 cut(s) 321
BlsI GCNGC 4 cut(s) 66, 75, 78, 455
Bme18I GGWCC 2 cut(s) 109, 374
BmgT120I GGNCC 4 cut(s) 109, 160, 362, 374
BmiI GGNNCC 2 cut(s) 72, 110
BmrI ACTGGG 1 cut(s) 69
BmsI GCATC 4 cut(s) 191, 370, 408, 424
BmuI ACTGGG 1 cut(s) 69
Bpu1102I GCTNAGC 1 cut(s) 321
BsaHI GRCGYC 1 cut(s) 99
BsaJI CCNNGG 1 cut(s) 222
BsaXI ACNNNNNCTCC 2 cut(s) 468, 498
Bsc4I CCNNNNNNNGG 5 cut(s) 60, 86, 169, 198, 371
Bse118I RCCGGY 1 cut(s) 86
Bse1I ACTGG 3 cut(s) 64, 405, 524
BseDI CCNNGG 1 cut(s) 222
BseGI GGATG 3 cut(s) 208, 423, 439
BseLI CCNNNNNNNGG 5 cut(s) 60, 86, 169, 198, 371
BseMII CTCAG 2 cut(s) 170, 335
BseNI ACTGG 3 cut(s) 64, 405, 524
BseX3I CGGCCG 1 cut(s) 65
BseXI GCAGC 1 cut(s) 465
Bsh1285I CGRYCG 1 cut(s) 68
BshFI GGCC 4 cut(s) 67, 90, 161, 363
BsiEI CGRYCG 1 cut(s) 68
BsiHKAI GWGCWC 2 cut(s) 235, 510
BsiSI CCGG 2 cut(s) 68, 87
BsiWI CGTACG 1 cut(s) 8
BslFI GGGAC 2 cut(s) 43, 122
BslI CCNNNNNNNGG 5 cut(s) 60, 86, 169, 198, 371
BsmFI GGGAC 2 cut(s) 43, 122
BsnI GGCC 4 cut(s) 67, 90, 161, 363
Bsp1286I GDGCHC 2 cut(s) 235, 510
Bsp143I GATC 1 cut(s) 277
Bsp1720I GCTNAGC 1 cut(s) 321
BspACI CCGC 6 cut(s) 51, 64, 74, 77, 170, 404
BspANI GGCC 4 cut(s) 67, 90, 161, 363
BspCNI CTCAG 2 cut(s) 169, 334
BspLI GGNNCC 2 cut(s) 72, 110
BspMI ACCTGC 1 cut(s) 120
BsrFI RCCGGY 1 cut(s) 86
BsrI ACTGG 3 cut(s) 64, 405, 524
BssAI RCCGGY 1 cut(s) 86
BssECI CCNNGG 1 cut(s) 222
BssMI GATC 1 cut(s) 277
BssNI GRCGYC 1 cut(s) 99
BssSI CACGAG 1 cut(s) 234
BssT1I CCWWGG 1 cut(s) 222
Bst2BI CACGAG 1 cut(s) 234
Bst4CI ACNGT 1 cut(s) 471
BstACI GRCGYC 1 cut(s) 99
BstAPI GCANNNNNTGC 1 cut(s) 427
BstC8I GCNNGC 3 cut(s) 127, 131, 149
BstDEI CTNAG 2 cut(s) 156, 321
BstF5I GGATG 3 cut(s) 208, 423, 439
BstKTI GATC 1 cut(s) 280
BstMBI GATC 1 cut(s) 277
BstMCI CGRYCG 1 cut(s) 68
BstMWI GCNNNNNNNGC 7 cut(s) 70, 73, 167, 305, 427, 462, 495
BstV1I GCAGC 1 cut(s) 465
BstZI CGGCCG 1 cut(s) 65
BsuRI GGCC 4 cut(s) 67, 90, 161, 363
BtgZI GCGATG 1 cut(s) 479
BtsCI GGATG 3 cut(s) 208, 423, 439
BtsI GCAGTG 1 cut(s) 267
BtsIMutI CAGTG 2 cut(s) 267, 476
BveI ACCTGC 1 cut(s) 120
Cac8I GCNNGC 3 cut(s) 127, 131, 149
Cfr10I RCCGGY 1 cut(s) 86
Cfr13I GGNCC 4 cut(s) 109, 160, 362, 374
Csp6I GTAC 1 cut(s) 9
CviAII CATG 1 cut(s) 386
CviQI GTAC 1 cut(s) 9
DdeI CTNAG 2 cut(s) 156, 321
DpnI GATC 1 cut(s) 279
DpnII GATC 1 cut(s) 277
EaeI YGGCCR 2 cut(s) 65, 88
EagI CGGCCG 1 cut(s) 65
EciI GGCGGA 1 cut(s) 419
EclXI CGGCCG 1 cut(s) 65
Eco130I CCWWGG 1 cut(s) 222
Eco47I GGWCC 2 cut(s) 109, 374
Eco52I CGGCCG 1 cut(s) 65
EcoO109I RGGNCCY 2 cut(s) 109, 160
EcoT14I CCWWGG 1 cut(s) 222
EcoT22I ATGCAT 1 cut(s) 439
ErhI CCWWGG 1 cut(s) 222
FaeI CATG 1 cut(s) 389
FaiI YATR 6 cut(s) 179, 244, 351, 387, 398, 513
FaqI GGGAC 2 cut(s) 43, 122
FatI CATG 1 cut(s) 385
FbaI TGATCA 1 cut(s) 277
Fnu4HI GCNGC 4 cut(s) 65, 74, 77, 454
FokI GGATG 3 cut(s) 215, 430, 446
Fsp4HI GCNGC 4 cut(s) 65, 74, 77, 454
GluI GCNGC 4 cut(s) 65, 74, 77, 454
HaeIII GGCC 4 cut(s) 67, 90, 161, 363
HapII CCGG 2 cut(s) 68, 87
Hin1I GRCGYC 1 cut(s) 99
Hin1II CATG 1 cut(s) 389
HinfI GANTC 1 cut(s) 338
HpaII CCGG 2 cut(s) 68, 87
HphI GGTGA 1 cut(s) 152
Hpy166II GTNNAC 1 cut(s) 46
Hpy188I TCNGA 1 cut(s) 445
Hpy188III TCNNGA 2 cut(s) 186, 236
Hpy8I GTNNAC 1 cut(s) 46
Hpy99I CGWCG 2 cut(s) 104, 140
HpyAV CCTTC 2 cut(s) 137, 336
HpyCH4III ACNGT 1 cut(s) 471
HpyCH4IV ACGT 3 cut(s) 99, 229, 354
HpyCH4V TGCA 4 cut(s) 259, 308, 421, 437
HpyF10VI GCNNNNNNNGC 7 cut(s) 70, 73, 167, 305, 427, 462, 495
HpyF3I CTNAG 2 cut(s) 156, 321
HpySE526I ACGT 3 cut(s) 99, 229, 354
Hsp92I GRCGYC 1 cut(s) 99
Hsp92II CATG 1 cut(s) 389
Ksp22I TGATCA 1 cut(s) 277
Kzo9I GATC 1 cut(s) 277
LmnI GCTCC 3 cut(s) 4, 70, 450
Lsp1109I GCAGC 1 cut(s) 465
LweI GCATC 4 cut(s) 191, 370, 408, 424
MaeII ACGT 3 cut(s) 99, 229, 354
MaeIII GTNAC 2 cut(s) 55, 95
MalI GATC 1 cut(s) 279
MboI GATC 1 cut(s) 277
MfeI CAATTG 1 cut(s) 309
MhlI GDGCHC 2 cut(s) 235, 510
MluCI AATT 2 cut(s) 309, 531
MnlI CCTC 6 cut(s) 34, 173, 188, 199, 298, 470
Mph1103I ATGCAT 1 cut(s) 439
MslI CAYNNNNRTG 2 cut(s) 20, 53
MspA1I CMGCKG 1 cut(s) 371
MspI CCGG 2 cut(s) 68, 87
MunI CAATTG 1 cut(s) 309
MwoI GCNNNNNNNGC 7 cut(s) 70, 73, 167, 305, 427, 462, 495
NdeII GATC 1 cut(s) 277
NlaIII CATG 1 cut(s) 389
NlaIV GGNNCC 2 cut(s) 72, 110
NmeAIII GCCGAG 1 cut(s) 325
NmuCI GTSAC 2 cut(s) 55, 95
NsiI ATGCAT 1 cut(s) 439
OliI CACNNNNGTG 1 cut(s) 53
PfeI GAWTC 1 cut(s) 338
Pfl23II CGTACG 1 cut(s) 8
PflFI GACNNNGTC 1 cut(s) 101
PkrI GCNGC 4 cut(s) 66, 75, 78, 455
PpuMI RGGWCCY 1 cut(s) 109
Psp5II RGGWCCY 1 cut(s) 109
PspLI CGTACG 1 cut(s) 8
PspN4I GGNNCC 2 cut(s) 72, 110
PspPI GGNCC 4 cut(s) 109, 160, 362, 374
PspPPI RGGWCCY 1 cut(s) 109
PsyI GACNNNGTC 1 cut(s) 101
PvuII CAGCTG 1 cut(s) 371
RsaI GTAC 1 cut(s) 10
RsaNI GTAC 1 cut(s) 9
RseI CAYNNNNRTG 2 cut(s) 20, 53
SatI GCNGC 4 cut(s) 65, 74, 77, 454
Sau3AI GATC 1 cut(s) 277
Sau96I GGNCC 4 cut(s) 109, 160, 362, 374
SduI GDGCHC 2 cut(s) 235, 510
SfaNI GCATC 4 cut(s) 191, 370, 408, 424
SinI GGWCC 2 cut(s) 109, 374
SmiMI CAYNNNNRTG 2 cut(s) 20, 53
Sse9I AATT 2 cut(s) 309, 531
SsiI CCGC 6 cut(s) 51, 64, 74, 77, 170, 404
StyI CCWWGG 1 cut(s) 222
TaaI ACNGT 1 cut(s) 471
TaiI ACGT 3 cut(s) 102, 232, 357
TasI AATT 2 cut(s) 309, 531
TauI GCSGC 3 cut(s) 67, 76, 79
TfiI GAWTC 1 cut(s) 338
TscAI CASTG 2 cut(s) 274, 476
TseFI GTSAC 2 cut(s) 55, 95
TseI GCWGC 1 cut(s) 453
Tsp45I GTSAC 2 cut(s) 55, 95
TspDTI ATGAA 2 cut(s) 330, 448
TspGWI ACGGA 1 cut(s) 47
TspRI CASTG 2 cut(s) 274, 476
Tth111I GACNNNGTC 1 cut(s) 101
VpaK11BI GGWCC 2 cut(s) 109, 374
XapI RAATTY 1 cut(s) 531
ZraI GACGTC 1 cut(s) 100
Zsp2I ATGCAT 1 cut(s) 439
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.