Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0012361

Physical Location & Seq

Genomic Coordinates Forward (+)

19641744 .. 19644362

Gene Structure 2619 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G48470.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1194 bp

ATGTTACAGTCCATTCATCTTCGTTTTTCCTCCACACCATCACCTTCTAAAAGAGAATCTCTCATAATTCCATCGGTTATTTGCTCATTTCCTTTCACCTCTTCTTCGTTCCGTCCAAAGCAAACCCAGAAACTGAAGCGTCTGGTTCAATTTTGCGCTCCTTACGAGGTCGGAGGTGGATACACCGATGAAGAATTGTTCGAAAGATACGGAACTCAGCAAAATCAAACTAATGTCAAAGATAAATTAGATCCAGCTGAGTATGAAGCTTTGCTTAAAGGAGGCGAACAAGTGACTTCCGTTCTTGAAGAAATGATTACCCTCTTGGAAGATATGAAGATGAATGAAGCATCTGAGAATGTTGCTGTAGAATTGGCTGCACAAGGAGTTATAGGGAAAAGGGTTGATGAAATGGAATCAGGGTTTATGATGGCTCTTGATTACATGATCCAACTTGCAGACAAAGACCAAGACGAGAAGAGAAAGTCTTTACTAGAGGTCGTCAAGGAGACTGTCTTATCTCATCTCACCAAGAAATGCCCTCCTCATGTCCAGGTGATTGGTTTACTCTGTAGAACCCCGAAAAAGGAAAGTAGACATGAGCTTCTGCGTAGGGTGGCTGCAGGTGGTGGGGCTTTTGAAAGTGAGAACGGTACTAAACTTCATATACCCGGAGCAAATCTGAATGACATAGCTAATCAAGCTGATGACTTGCTAGAGACTATGGAAACAAGGCCAGCTATTCCGGATCGAAAACTACTAGCGAGGCTTGTTTTGATTAGAGAGGAAGCCCGGAACATGATGGGAGGAGGTATACTTGATGAAAGAAATGACCGAGGTTTCACTACTCTTCCTGAATCAGAGGTGAATTTCTTAGCCAAATTGGTAGCTTTGAAACCTGGAAAGACTGTGCAGCAGATGATCCAGAATGTAATGCAAGGGAAAGATGAAGGCGCAGATAATCTTAGCAAAGAAGACGATTCTTCTACCGAAGGAAGAAAACCAAGTGGATTAAATGGAAGGGGAAGCGTTACAGGAAGAAAACCGTTACCAGTAAGACCAGGAATGTTTCTAGAAACTGTCACAAAGGTACTGGGAAGTATATACTCGGGTAATGCCTCCGGGATAACAGCACAACATCTAGAATGGGTTCACCAAAAAACCCTCCAAGTTCTTGAAGAAATCGCTTATTAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

397

Amino Acids

44.01

Weight (kDa)

5.81

Isoelectric Point (pI)

35.89

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48470
fragaria_vesca	FvH4_2g17800 FvH4_2g17800 FvH4_2g17800
malus_domestica	MD05G1159400.v1.1 MD10G1151900.v1.1
prunus_persica	Prupe.8G190300_v2.0.a1 Prupe.8G190300_v2.0.a1
pyrus_communis	pycom10g13090
rosa_chinensis	RchiOBHm_Chr6g0282821
rosa_laevigata	RLG00000012865
rosa_multiflora	Rmu_sc0006070.1_g000012
rosa_roxburghii	Rroxscaffold_7G00185970
rosa_rugosa	Rorug06G0149800
rosa_samantha	Rh6AG263100 Rh6BG266000 Rh6CG265200 Rh6DG257800
rosa_wichuraiana	Rw6G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	614
Acc36I	ACCTGC	1 cut(s)	614
AccI	GTMKAC	2 cut(s)	595, 814
AccIII	TCCGGA	1 cut(s)	745
AclWI	GGATC	4 cut(s)	245, 442, 756, 916
AcsI	RAATTY	1 cut(s)	868
AcuI	CTGAAG	1 cut(s)	155
AfaI	GTAC	2 cut(s)	655, 1092
AfiI	CCNNNNNNNGG	1 cut(s)	586
AgsI	TTSAA	5 cut(s)	149, 308, 641, 895, 1178
AjnI	CCWGG	3 cut(s)	552, 898, 1060
AluBI	AGCT	7 cut(s)	257, 269, 604, 695, 704, 740, 890
AluI	AGCT	7 cut(s)	257, 269, 604, 695, 704, 740, 890
Alw26I	GTCTC	2 cut(s)	503, 713
AlwI	GGATC	4 cut(s)	245, 442, 756, 916
AlwNI	CAGNNNCTG	1 cut(s)	133
Ama87I	CYCGRG	1 cut(s)	1108
Aor13HI	TCCGGA	1 cut(s)	745
AoxI	GGCC	1 cut(s)	734
ApeKI	GCWGC	3 cut(s)	377, 620, 913
ApoI	RAATTY	1 cut(s)	868
Asp700I	GAANNNNTTC	1 cut(s)	1149
AspLEI	GCGC	2 cut(s)	158, 956
AsuC2I	CCSGG	3 cut(s)	672, 793, 1123
AsuHPI	GGTGA	6 cut(s)	33, 88, 520, 568, 877, 1145
AsuII	TTCGAA	1 cut(s)	201
AvaI	CYCGRG	1 cut(s)	1108
BbsI	GAAGAC	1 cut(s)	981
BbvI	GCAGC	3 cut(s)	364, 607, 925
BccI	CCATC	4 cut(s)	46, 79, 424, 796
BciT130I	CCWGG	3 cut(s)	554, 900, 1062
BciVI	GTATCC	1 cut(s)	173
BcnI	CCSGG	3 cut(s)	672, 793, 1123
BcoDI	GTCTC	2 cut(s)	503, 713
BfaI	CTAG	5 cut(s)	494, 716, 761, 1073, 1142
BfmI	CTRYAG	3 cut(s)	366, 571, 621
BfuAI	ACCTGC	1 cut(s)	614
BfuI	GTATCC	1 cut(s)	173
BisI	GCNGC	3 cut(s)	378, 621, 914
BlsI	GCNGC	3 cut(s)	379, 622, 915
Bme1390I	CCNGG	6 cut(s)	554, 672, 793, 900, 1062, 1123
BmeT110I	CYCGRG	1 cut(s)	1108
BmrFI	CCNGG	6 cut(s)	554, 672, 793, 900, 1062, 1123
BmrI	ACTGGG	1 cut(s)	1103
BmsI	GCATC	1 cut(s)	359
BmuI	ACTGGG	1 cut(s)	1103
BpiI	GAAGAC	1 cut(s)	981
BplI	GAGNNNNNCTC	2 cut(s)	45, 77
Bpu14I	TTCGAA	1 cut(s)	201
BpuMI	CCSGG	3 cut(s)	672, 793, 1123
BsaJI	CCNNGG	1 cut(s)	835
BsaWI	WCCGGW	1 cut(s)	745
Bsc4I	CCNNNNNNNGG	1 cut(s)	586
Bse1I	ACTGG	2 cut(s)	1052, 1098
BseAI	TCCGGA	1 cut(s)	745
BseBI	CCWGG	3 cut(s)	554, 900, 1062
BseDI	CCNNGG	1 cut(s)	835
BseLI	CCNNNNNNNGG	1 cut(s)	586
BseMII	CTCAG	3 cut(s)	230, 249, 345
BseNI	ACTGG	2 cut(s)	1052, 1098
BseRI	GAGGAG	2 cut(s)	534, 822
BseXI	GCAGC	3 cut(s)	364, 607, 925
BsgI	GTGCAG	2 cut(s)	363, 932
BshFI	GGCC	1 cut(s)	736
BsiHKCI	CYCGRG	1 cut(s)	1108
BsiSI	CCGG	4 cut(s)	672, 746, 793, 1122
BslI	CCNNNNNNNGG	1 cut(s)	586
BsmAI	GTCTC	2 cut(s)	503, 713
BsnI	GGCC	1 cut(s)	736
BsoBI	CYCGRG	1 cut(s)	1108
Bsp119I	TTCGAA	1 cut(s)	201
Bsp13I	TCCGGA	1 cut(s)	745
Bsp143I	GATC	4 cut(s)	250, 447, 748, 921
BspANI	GGCC	1 cut(s)	736
BspCNI	CTCAG	3 cut(s)	229, 250, 346
BspEI	TCCGGA	1 cut(s)	745
BspMAI	CTGCAG	1 cut(s)	625
BspMI	ACCTGC	1 cut(s)	614
BspPI	GGATC	4 cut(s)	245, 442, 756, 916
BspT104I	TTCGAA	1 cut(s)	201
BsrI	ACTGG	2 cut(s)	1052, 1098
BssECI	CCNNGG	1 cut(s)	835
BssMI	GATC	4 cut(s)	250, 447, 748, 921
BssNAI	GTATAC	1 cut(s)	815
Bst1107I	GTATAC	1 cut(s)	815
Bst2UI	CCWGG	3 cut(s)	554, 900, 1062
Bst4CI	ACNGT	6 cut(s)	9, 514, 653, 910, 1047, 1081
Bst6I	CTCTTC	3 cut(s)	106, 473, 855
BstBI	TTCGAA	1 cut(s)	201
BstC8I	GCNNGC	1 cut(s)	738
BstDEI	CTNAG	5 cut(s)	216, 258, 354, 874, 965
BstHHI	GCGC	2 cut(s)	158, 956
BstKTI	GATC	4 cut(s)	253, 450, 751, 924
BstMAI	GTCTC	2 cut(s)	503, 713
BstMBI	GATC	4 cut(s)	250, 447, 748, 921
BstMWI	GCNNNNNNNGC	1 cut(s)	701
BstNI	CCWGG	3 cut(s)	554, 900, 1062
BstSCI	CCNGG	6 cut(s)	552, 670, 791, 898, 1060, 1121
BstSFI	CTRYAG	3 cut(s)	366, 571, 621
BstV1I	GCAGC	3 cut(s)	364, 607, 925
BstV2I	GAAGAC	1 cut(s)	981
BstX2I	RGATCY	1 cut(s)	250
BstXI	CCANNNNNNTGG	1 cut(s)	560
BstYI	RGATCY	1 cut(s)	250
BstZ17I	GTATAC	1 cut(s)	815
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	1 cut(s)	736
BveI	ACCTGC	1 cut(s)	614
Cac8I	GCNNGC	1 cut(s)	738
CaiI	CAGNNNCTG	1 cut(s)	133
CfoI	GCGC	2 cut(s)	158, 956
CseI	GACGC	1 cut(s)	128
Csp6I	GTAC	2 cut(s)	654, 1091
CviAII	CATG	4 cut(s)	445, 548, 599, 799
CviQI	GTAC	2 cut(s)	654, 1091
DdeI	CTNAG	5 cut(s)	216, 258, 354, 874, 965
DpnI	GATC	4 cut(s)	252, 449, 750, 923
DpnII	GATC	4 cut(s)	250, 447, 748, 921
Eam1104I	CTCTTC	3 cut(s)	106, 473, 855
EarI	CTCTTC	3 cut(s)	106, 473, 855
Eco57I	CTGAAG	1 cut(s)	155
Eco88I	CYCGRG	1 cut(s)	1108
EcoRII	CCWGG	3 cut(s)	552, 898, 1060
FaeI	CATG	4 cut(s)	448, 551, 602, 802
FalI	AAGNNNNNCTT	2 cut(s)	258, 290
FatI	CATG	4 cut(s)	444, 547, 598, 798
FblI	GTMKAC	2 cut(s)	595, 814
Fnu4HI	GCNGC	3 cut(s)	378, 621, 914
Fsp4HI	GCNGC	3 cut(s)	378, 621, 914
FspBI	CTAG	5 cut(s)	494, 716, 761, 1073, 1142
GlaI	GCGC	2 cut(s)	157, 955
GluI	GCNGC	3 cut(s)	378, 621, 914
HaeIII	GGCC	1 cut(s)	736
HapII	CCGG	4 cut(s)	672, 746, 793, 1122
HgaI	GACGC	1 cut(s)	128
HhaI	GCGC	2 cut(s)	158, 956
Hin1II	CATG	4 cut(s)	448, 551, 602, 802
Hin6I	GCGC	2 cut(s)	156, 954
HinP1I	GCGC	2 cut(s)	156, 954
HindIII	AAGCTT	1 cut(s)	267
HinfI	GANTC	4 cut(s)	56, 416, 857, 980
HpaII	CCGG	4 cut(s)	672, 746, 793, 1122
HphI	GGTGA	6 cut(s)	33, 88, 520, 568, 877, 1145
Hpy166II	GTNNAC	4 cut(s)	566, 596, 815, 1153
Hpy188I	TCNGA	4 cut(s)	173, 355, 684, 862
Hpy188III	TCNNGA	8 cut(s)	305, 437, 746, 854, 925, 1073, 1142, 1175
Hpy8I	GTNNAC	4 cut(s)	566, 596, 815, 1153
HpyAV	CCTTC	4 cut(s)	54, 944, 986, 1014
HpyCH4III	ACNGT	6 cut(s)	9, 514, 653, 910, 1047, 1081
HpyCH4V	TGCA	5 cut(s)	380, 458, 623, 913, 937
HpyF10VI	GCNNNNNNNGC	1 cut(s)	701
HpyF3I	CTNAG	5 cut(s)	216, 258, 354, 874, 965
Hsp92II	CATG	4 cut(s)	448, 551, 602, 802
HspAI	GCGC	2 cut(s)	156, 954
Kpn2I	TCCGGA	1 cut(s)	745
Kzo9I	GATC	4 cut(s)	250, 447, 748, 921
LmnI	GCTCC	2 cut(s)	163, 674
Lsp1109I	GCAGC	3 cut(s)	364, 607, 925
LweI	GCATC	1 cut(s)	359
MaeI	CTAG	5 cut(s)	494, 716, 761, 1073, 1142
MaeIII	GTNAC	5 cut(s)	3, 292, 1030, 1047, 1081
MalI	GATC	4 cut(s)	252, 449, 750, 923
MboI	GATC	4 cut(s)	250, 447, 748, 921
MflI	RGATCY	1 cut(s)	250
MluCI	AATT	7 cut(s)	66, 149, 194, 245, 371, 868, 881
MmeI	TCCRAC	2 cut(s)	151, 475
MroI	TCCGGA	1 cut(s)	745
MroXI	GAANNNNTTC	1 cut(s)	1149
MseI	TTAA	2 cut(s)	276, 1013
MspA1I	CMGCKG	1 cut(s)	257
MspI	CCGG	4 cut(s)	672, 746, 793, 1122
MspR9I	CCNGG	6 cut(s)	554, 672, 793, 900, 1062, 1123
MvaI	CCWGG	3 cut(s)	554, 900, 1062
MwoI	GCNNNNNNNGC	1 cut(s)	701
NciI	CCSGG	3 cut(s)	672, 793, 1123
NdeII	GATC	4 cut(s)	250, 447, 748, 921
NlaIII	CATG	4 cut(s)	448, 551, 602, 802
NmuCI	GTSAC	2 cut(s)	292, 1081
NspV	TTCGAA	1 cut(s)	201
PaqCI	CACCTGC	1 cut(s)	614
PdmI	GAANNNNTTC	1 cut(s)	1149
PfeI	GAWTC	4 cut(s)	56, 416, 857, 980
PfoI	TCCNGGA	1 cut(s)	1121
PkrI	GCNGC	3 cut(s)	379, 622, 915
Psp6I	CCWGG	3 cut(s)	552, 898, 1060
PspGI	CCWGG	3 cut(s)	552, 898, 1060
PstI	CTGCAG	1 cut(s)	625
PstNI	CAGNNNCTG	1 cut(s)	133
PsuI	RGATCY	1 cut(s)	250
PvuII	CAGCTG	1 cut(s)	257
RsaI	GTAC	2 cut(s)	655, 1092
RsaNI	GTAC	2 cut(s)	654, 1091
SaqAI	TTAA	2 cut(s)	276, 1013
SatI	GCNGC	3 cut(s)	378, 621, 914
Sau3AI	GATC	4 cut(s)	250, 447, 748, 921
ScrFI	CCNGG	6 cut(s)	554, 672, 793, 900, 1062, 1123
SfaNI	GCATC	1 cut(s)	359
SfcI	CTRYAG	3 cut(s)	366, 571, 621
SfuI	TTCGAA	1 cut(s)	201
Sse9I	AATT	7 cut(s)	66, 149, 194, 245, 371, 868, 881
SspMI	CTAG	5 cut(s)	494, 716, 761, 1073, 1142
StyD4I	CCNGG	6 cut(s)	552, 670, 791, 898, 1060, 1121
TaaI	ACNGT	6 cut(s)	9, 514, 653, 910, 1047, 1081
TaqI	TCGA	2 cut(s)	201, 751
TaqII	GACCGA	1 cut(s)	849
TasI	AATT	7 cut(s)	66, 149, 194, 245, 371, 868, 881
TfiI	GAWTC	4 cut(s)	56, 416, 857, 980
Tru1I	TTAA	2 cut(s)	276, 1013
Tru9I	TTAA	2 cut(s)	276, 1013
TseFI	GTSAC	2 cut(s)	292, 1081
TseI	GCWGC	3 cut(s)	377, 620, 913
Tsp45I	GTSAC	2 cut(s)	292, 1081
TspGWI	ACGGA	3 cut(s)	101, 225, 289
XapI	RAATTY	1 cut(s)	868
XbaI	TCTAGA	2 cut(s)	1072, 1141
XmiI	GTMKAC	2 cut(s)	595, 814
XmnI	GAANNNNTTC	1 cut(s)	1149
XspI	CTAG	5 cut(s)	494, 716, 761, 1073, 1142

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.