Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6D

Orthogroup ID

OG0012361

Physical Location & Seq

Genomic Coordinates Reverse (-)

44808812 .. 44812659

Gene Structure 3848 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6DG257800.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 945 bp

ATGAAGATGGATGAGGCGTCTGAAGAGGTGGCAGTGGAAATAGCTGCACAAGGGGTCCTGGGGAAGAGGGTTGATGAGATGGAGGCCGGTTTCATGATGGCGCTGGACTACATGATCCAACTTGCTGACACTGACCGAGACGAGAAGCGCAAGTCTCTATTGGAGGTGATTAAGGACACAGTCTTATCCTACCTTACTAAAAAATGCCCCCCGCATGTTCAAGTGATTGGGCTACTCTGTAGAACTCCTCTGAAAGAAAGTAGACATGAATTACTACGCAGAGTGGCTGCTGGTGGTGGTGTATTTAAAAGTAAAAATGACGTCAAAGTTCATGTTCCAGCTGCAAATCTAAATGAAATTGCTAACCAAGCTGATGATTTACTGGAGACAATGGAAACTCGGCCTATAGTTCCGGATCGAAAGCTACTTGCAAGACTTGTTTTAATCAGAGAGGAAGCTCGGAATATGATGGGAGGTGGAATACTAGATGAGAGAAATGATCGTGGGTTTAAGACTCTTCCTGAATCAGAGGTGAACTTCTTAACCAAACTGGTAGCTTTGAAACCGGGGAAGACTGTGGAGGAGATGATAAAAAGTGTAATGGAAGGAAAAGACGAAGGTGCAGAAGACTCTGGCAGTGATATGGAAGATACCACCAGTAGAAAGGGTTCGAGTGGAATTGCAGGAAGGGAAAGTGTTACAGGACGAAAAGCGCTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTATCCAAGGTCTTAGGTGGTATATATGCTGGAAATGTCTCTGGCATCACAGCACAACATCTAGAGTGGGTAAGCTTTACTAGTTACCATCTTGAAATTGTATTTTCCAAATGGTTCTTATTATTTTCTATTATGAAGAAGTCATCTGTAGGATTTATAATTACACACTTTCTTTCTCCAGTGACATCTCCTATATGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

314

Amino Acids

34.67

Weight (kDa)

6.14

Isoelectric Point (pI)

31.17

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48470
fragaria_vesca	FvH4_2g17800 FvH4_2g17800 FvH4_2g17800
malus_domestica	MD05G1159400.v1.1 MD10G1151900.v1.1
prunus_persica	Prupe.8G190300_v2.0.a1 Prupe.8G190300_v2.0.a1
pyrus_communis	pycom10g13090
rosa_chinensis	RchiOBHm_Chr6g0282821
rosa_laevigata	RLG00000012865
rosa_multiflora	Rmu_sc0006070.1_g000012
rosa_roxburghii	Rroxscaffold_7G00185970
rosa_rugosa	Rorug06G0149800
rosa_samantha	Rh6AG263100 Rh6BG266000 Rh6CG265200 Rh6DG257800
rosa_wichuraiana	Rw6G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	905
AatII	GACGTC	1 cut(s)	324
AccI	GTMKAC	1 cut(s)	262
AccIII	TCCGGA	1 cut(s)	412
AciI	CCGC	1 cut(s)	212
AclWI	GGATC	2 cut(s)	109, 423
AcuI	CTGAAG	1 cut(s)	42
AcyI	GRCGYC	2 cut(s)	17, 321
AfeI	AGCGCT	1 cut(s)	714
AgsI	TTSAA	3 cut(s)	221, 562, 842
AhlI	ACTAGT	1 cut(s)	827
AjnI	CCWGG	2 cut(s)	57, 727
AluBI	AGCT	7 cut(s)	44, 341, 371, 424, 458, 557, 822
AluI	AGCT	7 cut(s)	44, 341, 371, 424, 458, 557, 822
Alw26I	GTCTC	5 cut(s)	132, 159, 380, 737, 790
AlwI	GGATC	2 cut(s)	109, 423
Aor13HI	TCCGGA	1 cut(s)	412
Aor51HI	AGCGCT	1 cut(s)	714
AoxI	GGCC	2 cut(s)	84, 401
ApeKI	GCWGC	3 cut(s)	44, 287, 341
Asp700I	GAANNNNTTC	1 cut(s)	667
AspLEI	GCGC	4 cut(s)	103, 150, 715, 726
AspS9I	GGNCC	1 cut(s)	55
AsuC2I	CCSGG	1 cut(s)	567
AsuHPI	GGTGA	2 cut(s)	178, 544
AvaII	GGWCC	1 cut(s)	55
BbsI	GAAGAC	2 cut(s)	578, 633
BbvI	GCAGC	3 cut(s)	31, 274, 328
BccI	CCATC	4 cut(s)	73, 91, 463, 843
BciT130I	CCWGG	2 cut(s)	59, 729
BciVI	GTATCC	1 cut(s)	760
BcnI	CCSGG	1 cut(s)	567
BcoDI	GTCTC	5 cut(s)	132, 159, 380, 737, 790
BcuI	ACTAGT	1 cut(s)	827
BfaI	CTAG	3 cut(s)	485, 809, 828
BfmI	CTRYAG	3 cut(s)	238, 405, 894
BfoI	RGCGCY	2 cut(s)	104, 716
BfuI	GTATCC	1 cut(s)	760
BisI	GCNGC	3 cut(s)	45, 288, 342
BlsI	GCNGC	3 cut(s)	46, 289, 343
Bme1390I	CCNGG	3 cut(s)	59, 567, 729
Bme18I	GGWCC	1 cut(s)	55
BmgT120I	GGNCC	1 cut(s)	55
BmiI	GGNNCC	1 cut(s)	56
BmrFI	CCNGG	3 cut(s)	59, 567, 729
BmsI	GCATC	1 cut(s)	801
BpiI	GAAGAC	2 cut(s)	578, 633
BpmI	CTGGAG	2 cut(s)	404, 909
BpuEI	CTTGAG	1 cut(s)	761
BpuMI	CCSGG	1 cut(s)	567
BsaHI	GRCGYC	2 cut(s)	17, 321
BsaJI	CCNNGG	4 cut(s)	58, 566, 727, 753
BsaWI	WCCGGW	1 cut(s)	412
Bse118I	RCCGGY	1 cut(s)	86
Bse1I	ACTGG	4 cut(s)	387, 555, 657, 926
BseAI	TCCGGA	1 cut(s)	412
BseBI	CCWGG	2 cut(s)	59, 729
BseDI	CCNNGG	4 cut(s)	58, 566, 727, 753
BseGI	GGATG	1 cut(s)	16
BseNI	ACTGG	4 cut(s)	387, 555, 657, 926
BseRI	GAGGAG	2 cut(s)	237, 596
BseXI	GCAGC	3 cut(s)	31, 274, 328
BsgI	GTGCAG	2 cut(s)	30, 642
BshFI	GGCC	2 cut(s)	86, 403
BsiSI	CCGG	3 cut(s)	87, 413, 566
BsmAI	GTCTC	5 cut(s)	132, 159, 380, 737, 790
BsmBI	CGTCTC	1 cut(s)	132
BsnI	GGCC	2 cut(s)	86, 403
Bsp13I	TCCGGA	1 cut(s)	412
Bsp143I	GATC	3 cut(s)	114, 415, 499
BspACI	CCGC	1 cut(s)	212
BspANI	GGCC	2 cut(s)	86, 403
BspEI	TCCGGA	1 cut(s)	412
BspHI	TCATGA	1 cut(s)	93
BspLI	GGNNCC	1 cut(s)	56
BspPI	GGATC	2 cut(s)	109, 423
BsrFI	RCCGGY	1 cut(s)	86
BsrI	ACTGG	4 cut(s)	387, 555, 657, 926
BssAI	RCCGGY	1 cut(s)	86
BssECI	CCNNGG	4 cut(s)	58, 566, 727, 753
BssMI	GATC	3 cut(s)	114, 415, 499
BssNI	GRCGYC	2 cut(s)	17, 321
BssT1I	CCWWGG	1 cut(s)	753
Bst2UI	CCWGG	2 cut(s)	59, 729
Bst4CI	ACNGT	3 cut(s)	181, 577, 748
Bst6I	CTCTTC	3 cut(s)	18, 59, 522
BstACI	GRCGYC	2 cut(s)	17, 321
BstDEI	CTNAG	1 cut(s)	760
BstF5I	GGATG	1 cut(s)	16
BstH2I	RGCGCY	2 cut(s)	104, 716
BstHHI	GCGC	4 cut(s)	103, 150, 715, 726
BstKTI	GATC	3 cut(s)	117, 418, 502
BstMAI	GTCTC	5 cut(s)	132, 159, 380, 737, 790
BstMBI	GATC	3 cut(s)	114, 415, 499
BstMWI	GCNNNNNNNGC	2 cut(s)	368, 721
BstNI	CCWGG	2 cut(s)	59, 729
BstNSI	RCATGY	2 cut(s)	218, 736
BstSCI	CCNGG	3 cut(s)	57, 565, 727
BstSFI	CTRYAG	3 cut(s)	238, 405, 894
BstV1I	GCAGC	3 cut(s)	31, 274, 328
BstV2I	GAAGAC	2 cut(s)	578, 633
BsuI	GTATCC	1 cut(s)	760
BsuRI	GGCC	2 cut(s)	86, 403
BtsCI	GGATG	1 cut(s)	16
BtsI	GCAGTG	2 cut(s)	39, 643
BtsIMutI	CAGTG	4 cut(s)	39, 129, 643, 933
CciI	TCATGA	1 cut(s)	93
CfoI	GCGC	4 cut(s)	103, 150, 715, 726
Cfr10I	RCCGGY	1 cut(s)	86
Cfr13I	GGNCC	1 cut(s)	55
CseI	GACGC	1 cut(s)	6
CviAII	CATG	6 cut(s)	94, 112, 215, 266, 332, 733
DdeI	CTNAG	1 cut(s)	760
DpnI	GATC	3 cut(s)	116, 417, 501
DpnII	GATC	3 cut(s)	114, 415, 499
DraI	TTTAAA	1 cut(s)	307
Eam1104I	CTCTTC	3 cut(s)	18, 59, 522
EarI	CTCTTC	3 cut(s)	18, 59, 522
Eco130I	CCWWGG	1 cut(s)	753
Eco47I	GGWCC	1 cut(s)	55
Eco47III	AGCGCT	1 cut(s)	714
Eco57I	CTGAAG	1 cut(s)	42
EcoO109I	RGGNCCY	1 cut(s)	55
EcoRII	CCWGG	2 cut(s)	57, 727
EcoT14I	CCWWGG	1 cut(s)	753
ErhI	CCWWGG	1 cut(s)	753
Esp3I	CGTCTC	1 cut(s)	132
FaeI	CATG	6 cut(s)	97, 115, 218, 269, 335, 736
FatI	CATG	6 cut(s)	93, 111, 214, 265, 331, 732
FauI	CCCGC	1 cut(s)	219
FblI	GTMKAC	1 cut(s)	262
Fnu4HI	GCNGC	3 cut(s)	45, 288, 342
FokI	GGATG	1 cut(s)	23
Fsp4HI	GCNGC	3 cut(s)	45, 288, 342
FspBI	CTAG	3 cut(s)	485, 809, 828
GlaI	GCGC	4 cut(s)	102, 149, 714, 725
GluI	GCNGC	3 cut(s)	45, 288, 342
GsuI	CTGGAG	2 cut(s)	404, 909
HaeII	RGCGCY	2 cut(s)	104, 716
HaeIII	GGCC	2 cut(s)	86, 403
HapII	CCGG	3 cut(s)	87, 413, 566
HgaI	GACGC	1 cut(s)	6
HhaI	GCGC	4 cut(s)	103, 150, 715, 726
Hin1I	GRCGYC	2 cut(s)	17, 321
Hin1II	CATG	6 cut(s)	97, 115, 218, 269, 335, 736
Hin6I	GCGC	4 cut(s)	101, 148, 713, 724
HinP1I	GCGC	4 cut(s)	101, 148, 713, 724
HindIII	AAGCTT	1 cut(s)	820
HinfI	GANTC	3 cut(s)	514, 524, 629
HpaII	CCGG	3 cut(s)	87, 413, 566
HphI	GGTGA	2 cut(s)	178, 544
Hpy166II	GTNNAC	2 cut(s)	263, 535
Hpy188I	TCNGA	5 cut(s)	22, 252, 449, 462, 529
Hpy188III	TCNNGA	6 cut(s)	94, 413, 521, 740, 809, 839
Hpy8I	GTNNAC	2 cut(s)	263, 535
HpyAV	CCTTC	3 cut(s)	599, 611, 681
HpyCH4III	ACNGT	3 cut(s)	181, 577, 748
HpyCH4IV	ACGT	1 cut(s)	321
HpyCH4V	TGCA	5 cut(s)	47, 344, 431, 623, 683
HpyF10VI	GCNNNNNNNGC	2 cut(s)	368, 721
HpyF3I	CTNAG	1 cut(s)	760
HpySE526I	ACGT	1 cut(s)	321
Hsp92I	GRCGYC	2 cut(s)	17, 321
Hsp92II	CATG	6 cut(s)	97, 115, 218, 269, 335, 736
HspAI	GCGC	4 cut(s)	101, 148, 713, 724
Kpn2I	TCCGGA	1 cut(s)	412
Kzo9I	GATC	3 cut(s)	114, 415, 499
Lsp1109I	GCAGC	3 cut(s)	31, 274, 328
LweI	GCATC	1 cut(s)	801
MaeI	CTAG	3 cut(s)	485, 809, 828
MaeII	ACGT	1 cut(s)	321
MaeIII	GTNAC	3 cut(s)	697, 830, 928
MalI	GATC	3 cut(s)	116, 417, 501
MboI	GATC	3 cut(s)	114, 415, 499
MboII	GAAGA	8 cut(s)	16, 35, 76, 509, 583, 638, 659, 895
MluCI	AATT	5 cut(s)	269, 357, 678, 843, 906
MlyI	GAGTC	2 cut(s)	508, 623
MmeI	TCCRAC	1 cut(s)	142
MroI	TCCGGA	1 cut(s)	412
MroXI	GAANNNNTTC	1 cut(s)	667
MseI	TTAA	5 cut(s)	171, 306, 443, 510, 542
MspA1I	CMGCKG	1 cut(s)	341
MspI	CCGG	3 cut(s)	87, 413, 566
MspR9I	CCNGG	3 cut(s)	59, 567, 729
MvaI	CCWGG	2 cut(s)	59, 729
MwoI	GCNNNNNNNGC	2 cut(s)	368, 721
NciI	CCSGG	1 cut(s)	567
NdeII	GATC	3 cut(s)	114, 415, 499
NlaIII	CATG	6 cut(s)	97, 115, 218, 269, 335, 736
NlaIV	GGNNCC	1 cut(s)	56
NmeAIII	GCCGAG	1 cut(s)	379
NmuCI	GTSAC	1 cut(s)	928
NspI	RCATGY	2 cut(s)	218, 736
PagI	TCATGA	1 cut(s)	93
PdmI	GAANNNNTTC	1 cut(s)	667
PfeI	GAWTC	1 cut(s)	524
PflFI	GACNNNGTC	1 cut(s)	179
PkrI	GCNGC	3 cut(s)	46, 289, 343
PleI	GAGTC	2 cut(s)	508, 623
PpsI	GAGTC	2 cut(s)	508, 623
PpuMI	RGGWCCY	1 cut(s)	55
PsiI	TTATAA	1 cut(s)	905
Psp5II	RGGWCCY	1 cut(s)	55
Psp6I	CCWGG	2 cut(s)	57, 727
PspGI	CCWGG	2 cut(s)	57, 727
PspN4I	GGNNCC	1 cut(s)	56
PspPI	GGNCC	1 cut(s)	55
PspPPI	RGGWCCY	1 cut(s)	55
PsrI	GAACNNNNNNTAC	2 cut(s)	652, 684
PsyI	GACNNNGTC	1 cut(s)	179
PvuII	CAGCTG	1 cut(s)	341
SaqAI	TTAA	5 cut(s)	171, 306, 443, 510, 542
SatI	GCNGC	3 cut(s)	45, 288, 342
Sau3AI	GATC	3 cut(s)	114, 415, 499
Sau96I	GGNCC	1 cut(s)	55
SchI	GAGTC	2 cut(s)	508, 623
ScrFI	CCNGG	3 cut(s)	59, 567, 729
SfaNI	GCATC	1 cut(s)	801
SfcI	CTRYAG	3 cut(s)	238, 405, 894
SinI	GGWCC	1 cut(s)	55
SmlI	CTYRAG	1 cut(s)	740
SmoI	CTYRAG	1 cut(s)	740
SpeI	ACTAGT	1 cut(s)	827
Sse9I	AATT	5 cut(s)	269, 357, 678, 843, 906
SsiI	CCGC	1 cut(s)	212
SspMI	CTAG	3 cut(s)	485, 809, 828
StyD4I	CCNGG	3 cut(s)	57, 565, 727
StyI	CCWWGG	1 cut(s)	753
TaaI	ACNGT	3 cut(s)	181, 577, 748
TaiI	ACGT	1 cut(s)	324
TaqI	TCGA	2 cut(s)	418, 671
TaqII	GACCGA	1 cut(s)	150
TasI	AATT	5 cut(s)	269, 357, 678, 843, 906
TfiI	GAWTC	1 cut(s)	524
Tru1I	TTAA	5 cut(s)	171, 306, 443, 510, 542
Tru9I	TTAA	5 cut(s)	171, 306, 443, 510, 542
TscAI	CASTG	4 cut(s)	39, 136, 643, 933
TseFI	GTSAC	1 cut(s)	928
TseI	GCWGC	3 cut(s)	44, 287, 341
Tsp45I	GTSAC	1 cut(s)	928
TspDTI	ATGAA	6 cut(s)	17, 82, 282, 320, 369, 896
TspRI	CASTG	4 cut(s)	39, 136, 643, 933
Tth111I	GACNNNGTC	1 cut(s)	179
VpaK11BI	GGWCC	1 cut(s)	55
XbaI	TCTAGA	1 cut(s)	808
XceI	RCATGY	2 cut(s)	218, 736
XmiI	GTMKAC	1 cut(s)	262
XmnI	GAANNNNTTC	1 cut(s)	667
XspI	CTAG	3 cut(s)	485, 809, 828
ZraI	GACGTC	1 cut(s)	322

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.