Rh6AG263100

chloroplast organization

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_samantha
Chr6A
OG0012361
Physical Location & Seq
Reverse (-)
45444366 .. 45448158
3793 bp
Loading structure...
UTR
Exon/CDS
Intron
Rh6AG263100.1

Sequence Viewer

Length: 1209 bp
ATGTTGCAGAGCACCACCACATTCTTCCCCACTTGTTCACCATATTCGCCATCACAATCTCTCCGCCCAACCACTATCTCTCCCTGTCTCCTCTCTCTCCCATCATTTTCCTCTCACCACACACAATCCCAGTGGCATCCAAATCAACCAGCCCACAAGAAGAGCCAATTTCAGCGACTCTGTGGCACTTATGAGGTCGGTGGAGGCTTCCCAGACGACGGATTGGGCGTCCAAAACAGGAACAGAACTACCCAAGAGAAATTGGACCCGGCCCAGATTGAAGCCCTTCTCAAAGGTGGAGAGCAAGTCACTTCTGTCCTCGAAGAAATGATCACCCTCTTGGAGGATATGAAGATGGATGAGGCGTCTGAAGAGGTGGCAGTGGAAATAGCTGCACAAGGGGTCCTGGGGAAGAGGGTTGATGAGATGGAGGCCGGTTTCATGATGGCGCTGGACTACATGATCCAACTTGCTGACACTGACCAAGACGAGAAGCGCAAGTCTCTATTGGAGGTGATTAAGGACACAGTCTTATCCTACCTTACCAAAAAATGCCCCCCACATGTTCAGGTGATTGGGCTACTCTGTAGAACTCCTCTGAAAGAAAGTAGACATGAATTACTACGCAGAGTGGCTGCTGGTGGTGGTGTATTTAAAAGTAAAAATGACGTCAAAGTTCATGTTCCAGCTGCAAATCTGAATGAAATTGCTAACCAAGCTGACGATTTACTGGAGACAATGGAAACTCGGCCTATAGTTCCGGATCGAAAGCTACTTGCAAGACTTGTTTTAATCAGAGAGGAAGCTCGGAATATGATGGGAGGTGGAATACTAGATGAGAGAAATGATCGTGGGTTTAAGACTCTTCCTGAATCAGAGGTGAACTTCTTAACCAAACTGGTAGCTTTGAAACCGGGGAAGACTGTGGAGGAGATGATAAAAAGTGTAATGGAAGGAAAAGACGAAGGTGCAGAAGACTCTGGCAGTGATATGGAAGATACCACCAGTAGAAAGGGTTCGAGTGGAATTGCAGGAAGGGAAAGTGTTACAGGACGAAAAGCGCTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTAGCCAAGGTCTTAGGTGGTATATATGCTGGAAATGTCTCTGGCATCACAGCACAACATCTAGAGTGGGTTCATCAAAAGACACTTGAAGTTCTTCAGGAAATAGCATTTTAA

Protein Analysis

402

Amino Acids

44.26

Weight (kDa)

5.53

Isoelectric Point (pI)

43.11

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0012361)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G48470
fragaria_vesca FvH4_2g17800 FvH4_2g17800 FvH4_2g17800
malus_domestica MD05G1159400.v1.1 MD10G1151900.v1.1
prunus_persica Prupe.8G190300_v2.0.a1 Prupe.8G190300_v2.0.a1
pyrus_communis pycom10g13090
rosa_chinensis RchiOBHm_Chr6g0282821
rosa_laevigata RLG00000012865
rosa_multiflora Rmu_sc0006070.1_g000012
rosa_roxburghii Rroxscaffold_7G00185970
rosa_rugosa Rorug06G0149800
rosa_samantha Rh6AG263100 Rh6BG266000 Rh6CG265200 Rh6DG257800
rosa_wichuraiana Rw6G022710

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AatII GACGTC 1 cut(s) 672
AccI GTMKAC 1 cut(s) 610
AccIII TCCGGA 1 cut(s) 760
AciI CCGC 1 cut(s) 64
AclWI GGATC 2 cut(s) 457, 771
AcuI CTGAAG 2 cut(s) 390, 1175
AcyI GRCGYC 3 cut(s) 228, 365, 669
AfeI AGCGCT 1 cut(s) 1062
AfiI CCNNNNNNNGG 2 cut(s) 218, 343
AflIII ACRYGT 1 cut(s) 562
AgsI TTSAA 3 cut(s) 281, 910, 1184
AjnI CCWGG 2 cut(s) 405, 1075
AluBI AGCT 6 cut(s) 392, 689, 719, 772, 806, 905
AluI AGCT 6 cut(s) 392, 689, 719, 772, 806, 905
Alw21I GWGCWC 1 cut(s) 14
Alw26I GTCTC 5 cut(s) 92, 507, 728, 1085, 1138
AlwI GGATC 2 cut(s) 457, 771
Aor13HI TCCGGA 1 cut(s) 760
Aor51HI AGCGCT 1 cut(s) 1062
AoxI GGCC 3 cut(s) 270, 432, 749
ApeKI GCWGC 3 cut(s) 392, 635, 689
Asp700I GAANNNNTTC 3 cut(s) 285, 1015, 1188
AspLEI GCGC 4 cut(s) 451, 498, 1063, 1074
AspS9I GGNCC 3 cut(s) 265, 271, 403
AsuC2I CCSGG 2 cut(s) 269, 915
AsuHPI GGTGA 6 cut(s) 30, 107, 325, 526, 583, 892
AvaII GGWCC 2 cut(s) 265, 403
BbsI GAAGAC 2 cut(s) 926, 981
Bbv12I GWGCWC 1 cut(s) 14
BbvI GCAGC 3 cut(s) 379, 622, 676
BccI CCATC 6 cut(s) 58, 109, 349, 421, 439, 811
BciT130I CCWGG 2 cut(s) 407, 1077
BclI TGATCA 1 cut(s) 330
BcnI CCSGG 2 cut(s) 269, 915
BcoDI GTCTC 5 cut(s) 92, 507, 728, 1085, 1138
BfaI CTAG 2 cut(s) 833, 1157
BfmI CTRYAG 3 cut(s) 586, 753, 1095
BfoI RGCGCY 2 cut(s) 452, 1064
BisI GCNGC 3 cut(s) 393, 636, 690
BlsI GCNGC 3 cut(s) 394, 637, 691
Bme1390I CCNGG 4 cut(s) 269, 407, 915, 1077
Bme18I GGWCC 2 cut(s) 265, 403
BmgT120I GGNCC 3 cut(s) 265, 271, 403
BmiI GGNNCC 2 cut(s) 267, 404
BmrFI CCNGG 4 cut(s) 269, 407, 915, 1077
BmrI ACTGGG 1 cut(s) 124
BmsI GCATC 2 cut(s) 145, 1149
BmuI ACTGGG 1 cut(s) 124
BpiI GAAGAC 2 cut(s) 926, 981
BpmI CTGGAG 1 cut(s) 752
BpuEI CTTGAG 1 cut(s) 1109
BpuMI CCSGG 2 cut(s) 269, 915
BsaHI GRCGYC 3 cut(s) 228, 365, 669
BsaJI CCNNGG 4 cut(s) 406, 914, 1075, 1101
BsaWI WCCGGW 1 cut(s) 760
BsaXI ACNNNNNCTCC 6 cut(s) 45, 64, 75, 94, 291, 321
Bsc4I CCNNNNNNNGG 2 cut(s) 218, 343
Bse118I RCCGGY 1 cut(s) 434
Bse1I ACTGG 4 cut(s) 130, 735, 903, 1005
BseAI TCCGGA 1 cut(s) 760
BseBI CCWGG 2 cut(s) 407, 1077
BseDI CCNNGG 4 cut(s) 406, 914, 1075, 1101
BseGI GGATG 2 cut(s) 136, 364
BseLI CCNNNNNNNGG 2 cut(s) 218, 343
BseNI ACTGG 4 cut(s) 130, 735, 903, 1005
BseRI GAGGAG 3 cut(s) 80, 585, 944
BseXI GCAGC 3 cut(s) 379, 622, 676
BsgI GTGCAG 2 cut(s) 378, 990
BshFI GGCC 3 cut(s) 272, 434, 751
BsiHKAI GWGCWC 1 cut(s) 14
BsiSI CCGG 4 cut(s) 269, 435, 761, 914
BslI CCNNNNNNNGG 2 cut(s) 218, 343
BsmAI GTCTC 5 cut(s) 92, 507, 728, 1085, 1138
BsnI GGCC 3 cut(s) 272, 434, 751
Bsp1286I GDGCHC 1 cut(s) 14
Bsp13I TCCGGA 1 cut(s) 760
Bsp143I GATC 4 cut(s) 330, 462, 763, 847
BspACI CCGC 1 cut(s) 64
BspANI GGCC 3 cut(s) 272, 434, 751
BspEI TCCGGA 1 cut(s) 760
BspHI TCATGA 1 cut(s) 441
BspLI GGNNCC 2 cut(s) 267, 404
BspPI GGATC 2 cut(s) 457, 771
BspQI GCTCTTC 1 cut(s) 155
BsrFI RCCGGY 1 cut(s) 434
BsrI ACTGG 4 cut(s) 130, 735, 903, 1005
BssAI RCCGGY 1 cut(s) 434
BssECI CCNNGG 4 cut(s) 406, 914, 1075, 1101
BssMI GATC 4 cut(s) 330, 462, 763, 847
BssNI GRCGYC 3 cut(s) 228, 365, 669
BssT1I CCWWGG 1 cut(s) 1101
Bst2UI CCWGG 2 cut(s) 407, 1077
Bst4CI ACNGT 3 cut(s) 529, 925, 1096
Bst6I CTCTTC 4 cut(s) 155, 366, 407, 870
BstACI GRCGYC 3 cut(s) 228, 365, 669
BstDEI CTNAG 1 cut(s) 1108
BstENI CCTNNNNNAGG 1 cut(s) 341
BstF5I GGATG 2 cut(s) 136, 364
BstH2I RGCGCY 2 cut(s) 452, 1064
BstHHI GCGC 4 cut(s) 451, 498, 1063, 1074
BstKTI GATC 4 cut(s) 333, 465, 766, 850
BstMAI GTCTC 5 cut(s) 92, 507, 728, 1085, 1138
BstMBI GATC 4 cut(s) 330, 462, 763, 847
BstMWI GCNNNNNNNGC 2 cut(s) 716, 1069
BstNI CCWGG 2 cut(s) 407, 1077
BstNSI RCATGY 2 cut(s) 566, 1084
BstSCI CCNGG 4 cut(s) 267, 405, 913, 1075
BstSFI CTRYAG 3 cut(s) 586, 753, 1095
BstV1I GCAGC 3 cut(s) 379, 622, 676
BstV2I GAAGAC 2 cut(s) 926, 981
BsuRI GGCC 3 cut(s) 272, 434, 751
BtsCI GGATG 2 cut(s) 136, 364
BtsI GCAGTG 2 cut(s) 387, 991
BtsIMutI CAGTG 4 cut(s) 137, 387, 477, 991
CciI TCATGA 1 cut(s) 441
CfoI GCGC 4 cut(s) 451, 498, 1063, 1074
Cfr10I RCCGGY 1 cut(s) 434
Cfr13I GGNCC 3 cut(s) 265, 271, 403
CseI GACGC 2 cut(s) 217, 354
CspCI CAANNNNNGTGG 2 cut(s) 113, 148
CviAII CATG 6 cut(s) 442, 460, 563, 614, 680, 1081
DdeI CTNAG 1 cut(s) 1108
DpnI GATC 4 cut(s) 332, 464, 765, 849
DpnII GATC 4 cut(s) 330, 462, 763, 847
DraI TTTAAA 1 cut(s) 655
Eam1104I CTCTTC 4 cut(s) 155, 366, 407, 870
EarI CTCTTC 4 cut(s) 155, 366, 407, 870
EciI GGCGGA 1 cut(s) 53
Eco130I CCWWGG 1 cut(s) 1101
Eco47I GGWCC 2 cut(s) 265, 403
Eco47III AGCGCT 1 cut(s) 1062
Eco57I CTGAAG 2 cut(s) 390, 1175
EcoNI CCTNNNNNAGG 1 cut(s) 341
EcoO109I RGGNCCY 1 cut(s) 403
EcoRII CCWGG 2 cut(s) 405, 1075
EcoT14I CCWWGG 1 cut(s) 1101
ErhI CCWWGG 1 cut(s) 1101
FaeI CATG 6 cut(s) 445, 463, 566, 617, 683, 1084
FatI CATG 6 cut(s) 441, 459, 562, 613, 679, 1080
FbaI TGATCA 1 cut(s) 330
FblI GTMKAC 1 cut(s) 610
Fnu4HI GCNGC 3 cut(s) 393, 636, 690
FokI GGATG 2 cut(s) 123, 371
Fsp4HI GCNGC 3 cut(s) 393, 636, 690
FspBI CTAG 2 cut(s) 833, 1157
GlaI GCGC 4 cut(s) 450, 497, 1062, 1073
GluI GCNGC 3 cut(s) 393, 636, 690
GsuI CTGGAG 1 cut(s) 752
HaeII RGCGCY 2 cut(s) 452, 1064
HaeIII GGCC 3 cut(s) 272, 434, 751
HapII CCGG 4 cut(s) 269, 435, 761, 914
HgaI GACGC 2 cut(s) 217, 354
HhaI GCGC 4 cut(s) 451, 498, 1063, 1074
Hin1I GRCGYC 3 cut(s) 228, 365, 669
Hin1II CATG 6 cut(s) 445, 463, 566, 617, 683, 1084
Hin6I GCGC 4 cut(s) 449, 496, 1061, 1072
HinP1I GCGC 4 cut(s) 449, 496, 1061, 1072
HinfI GANTC 4 cut(s) 177, 862, 872, 977
HpaII CCGG 4 cut(s) 269, 435, 761, 914
HphI GGTGA 6 cut(s) 30, 107, 325, 526, 583, 892
Hpy166II GTNNAC 3 cut(s) 38, 611, 883
Hpy188I TCNGA 6 cut(s) 370, 600, 699, 797, 810, 877
Hpy188III TCNNGA 6 cut(s) 442, 761, 869, 1088, 1157, 1193
Hpy8I GTNNAC 3 cut(s) 38, 611, 883
Hpy99I CGWCG 1 cut(s) 221
HpyAV CCTTC 4 cut(s) 296, 947, 959, 1029
HpyCH4III ACNGT 3 cut(s) 529, 925, 1096
HpyCH4IV ACGT 1 cut(s) 669
HpyCH4V TGCA 6 cut(s) 7, 395, 692, 779, 971, 1031
HpyF10VI GCNNNNNNNGC 2 cut(s) 716, 1069
HpyF3I CTNAG 1 cut(s) 1108
HpySE526I ACGT 1 cut(s) 669
Hsp92I GRCGYC 3 cut(s) 228, 365, 669
Hsp92II CATG 6 cut(s) 445, 463, 566, 617, 683, 1084
HspAI GCGC 4 cut(s) 449, 496, 1061, 1072
Kpn2I TCCGGA 1 cut(s) 760
Ksp22I TGATCA 1 cut(s) 330
Kzo9I GATC 4 cut(s) 330, 462, 763, 847
LguI GCTCTTC 1 cut(s) 155
Lsp1109I GCAGC 3 cut(s) 379, 622, 676
LweI GCATC 2 cut(s) 145, 1149
MaeI CTAG 2 cut(s) 833, 1157
MaeII ACGT 1 cut(s) 669
MaeIII GTNAC 2 cut(s) 307, 1045
MalI GATC 4 cut(s) 332, 464, 765, 849
MboI GATC 4 cut(s) 330, 462, 763, 847
MhlI GDGCHC 1 cut(s) 14
MluCI AATT 5 cut(s) 167, 260, 617, 705, 1026
MlyI GAGTC 3 cut(s) 171, 856, 971
MmeI TCCRAC 1 cut(s) 490
MroI TCCGGA 1 cut(s) 760
MroXI GAANNNNTTC 3 cut(s) 285, 1015, 1188
MseI TTAA 6 cut(s) 519, 654, 791, 858, 890, 1207
MspA1I CMGCKG 1 cut(s) 689
MspI CCGG 4 cut(s) 269, 435, 761, 914
MspR9I CCNGG 4 cut(s) 269, 407, 915, 1077
MvaI CCWGG 2 cut(s) 407, 1077
MwoI GCNNNNNNNGC 2 cut(s) 716, 1069
NciI CCSGG 2 cut(s) 269, 915
NdeII GATC 4 cut(s) 330, 462, 763, 847
NlaIII CATG 6 cut(s) 445, 463, 566, 617, 683, 1084
NlaIV GGNNCC 2 cut(s) 267, 404
NmeAIII GCCGAG 1 cut(s) 727
NmuCI GTSAC 1 cut(s) 307
NspI RCATGY 2 cut(s) 566, 1084
PagI TCATGA 1 cut(s) 441
PciI ACATGT 1 cut(s) 562
PciSI GCTCTTC 1 cut(s) 155
PcsI WCGNNNNNNNCGW 1 cut(s) 225
PdmI GAANNNNTTC 3 cut(s) 285, 1015, 1188
PfeI GAWTC 1 cut(s) 872
PflFI GACNNNGTC 1 cut(s) 527
PkrI GCNGC 3 cut(s) 394, 637, 691
PleI GAGTC 3 cut(s) 171, 856, 971
PpsI GAGTC 3 cut(s) 171, 856, 971
PpuMI RGGWCCY 1 cut(s) 403
PscI ACATGT 1 cut(s) 562
Psp5II RGGWCCY 1 cut(s) 403
Psp6I CCWGG 2 cut(s) 405, 1075
PspGI CCWGG 2 cut(s) 405, 1075
PspN4I GGNNCC 2 cut(s) 267, 404
PspPI GGNCC 3 cut(s) 265, 271, 403
PspPPI RGGWCCY 1 cut(s) 403
PsrI GAACNNNNNNTAC 2 cut(s) 1000, 1032
PsyI GACNNNGTC 1 cut(s) 527
PvuII CAGCTG 1 cut(s) 689
SapI GCTCTTC 1 cut(s) 155
SaqAI TTAA 6 cut(s) 519, 654, 791, 858, 890, 1207
SatI GCNGC 3 cut(s) 393, 636, 690
Sau3AI GATC 4 cut(s) 330, 462, 763, 847
Sau96I GGNCC 3 cut(s) 265, 271, 403
SchI GAGTC 3 cut(s) 171, 856, 971
ScrFI CCNGG 4 cut(s) 269, 407, 915, 1077
SduI GDGCHC 1 cut(s) 14
SfaNI GCATC 2 cut(s) 145, 1149
SfcI CTRYAG 3 cut(s) 586, 753, 1095
SinI GGWCC 2 cut(s) 265, 403
SmlI CTYRAG 1 cut(s) 1088
SmoI CTYRAG 1 cut(s) 1088
Sse9I AATT 5 cut(s) 167, 260, 617, 705, 1026
SsiI CCGC 1 cut(s) 64
SspMI CTAG 2 cut(s) 833, 1157
StyD4I CCNGG 4 cut(s) 267, 405, 913, 1075
StyI CCWWGG 1 cut(s) 1101
TaaI ACNGT 3 cut(s) 529, 925, 1096
TaiI ACGT 1 cut(s) 672
TaqI TCGA 3 cut(s) 321, 766, 1019
TasI AATT 5 cut(s) 167, 260, 617, 705, 1026
TfiI GAWTC 1 cut(s) 872
Tru1I TTAA 6 cut(s) 519, 654, 791, 858, 890, 1207
Tru9I TTAA 6 cut(s) 519, 654, 791, 858, 890, 1207
TscAI CASTG 4 cut(s) 137, 387, 484, 991
TseFI GTSAC 1 cut(s) 307
TseI GCWGC 3 cut(s) 392, 635, 689
Tsp45I GTSAC 1 cut(s) 307
TspDTI ATGAA 6 cut(s) 365, 430, 630, 668, 717, 1157
TspGWI ACGGA 1 cut(s) 234
TspRI CASTG 4 cut(s) 137, 387, 484, 991
Tth111I GACNNNGTC 1 cut(s) 527
VpaK11BI GGWCC 2 cut(s) 265, 403
XagI CCTNNNNNAGG 1 cut(s) 341
XbaI TCTAGA 1 cut(s) 1156
XceI RCATGY 2 cut(s) 566, 1084
XmiI GTMKAC 1 cut(s) 610
XmnI GAANNNNTTC 3 cut(s) 285, 1015, 1188
XspI CTAG 2 cut(s) 833, 1157
ZraI GACGTC 1 cut(s) 670
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.