Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr10

Orthogroup ID

OG0012361

Physical Location & Seq

Genomic Coordinates Reverse (-)

23891149 .. 23896428

Gene Structure 5280 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD10G1151900.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1185 bp

ATGTTTCCGTGTTTTTCATACCCAGCTGCACAATCTGTAAACCCAGCAATTCTCTGTCTACCCTCTTTTTCCTCCCACCACATCAAATTTCCCCAACCTCAGCTTCAGCCAAAGCAACCCAATAAGAAGATGCAGCGGCAGACGCTGCGGTGGTGCGGCACCTATGAGGTGGGCGGCGGATACCCGGATGAAGGATTTGGCGCACAAGGGAAGAACAGAGCTGCCCGAGAGCAAGACAGCTCAAAATTGGAGCCTGCCCAATACGAAGCCCTTCTCAGAGGTGGTGAGCAGGTCACTTCTGTTCTTGAAGAGATGATCGTACTTTTGGAGGATATGAACATGGATGAGGCATCTGAAGAGGTGGCAGTGGAAATTGCTGCACAGGGGGTCCTAGGGAAGAGAGTCGATGAAATGGAGGCCAGTTTCATGATGGCTCTAGATTACATGATCCAACTCGCTGACAGTGACCAAGATGATAAGCGCAAGTCTCTATTGGAGGTGATCAAGGAGACAGTATTATCCTATCTTACGAAAAAATGCCCCCCACATGTTCAAGTGGTTGGCCTACTCTGCAGAACTCCCTTAAAAGAAAGCAGGCAGGAATTACTACGCAGAGTGGCTGCCGGTGGTGGTGTGTTTAAAAGTAAAAATGACATCAAAGTTCATGTTCCAGCTGCAAATCTTAATGATATTGCTAACCAGGCTGATGATATACTGGAGACAATGGAAACTCGGCCTATAGTTCCAGATCGAAAACTGCTTGCAAGACTTGTTTTGATCAGAGAGGAAGCTCGGAATATGATGGGAGGTGGAATACTAGATGAGAGAAATGATCGTGGATTTAACACTCTTCCAGAATCCGAGGTGAATTTCTTAACCAAACTGGTAGCTTTAAAGCCGGGGAAGACTGTCCAGGAGATGATAAAAAATGTAATGGAAGGAAAAAATGAAGGTGCTGACCACTCTAGCAGTGATGAGGAAGATGGCACTGGTGCGACGAGTGGAATTGGAGGAAGGGAAAGCATTTCAGGACGAAAACCACTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAGGTCTTAGGTGGTATATATGGTGGAAATGTCTCTGGTATCACAGCACAGCATCTAGAATGGGTAATGTTCATCAGAAGACACTTGAAGTTCTTCAGGAAATAG

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

395

Amino Acids

43.66

Weight (kDa)

6.07

Isoelectric Point (pI)

43.37

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48470
fragaria_vesca	FvH4_2g17800 FvH4_2g17800 FvH4_2g17800
malus_domestica	MD05G1159400.v1.1 MD10G1151900.v1.1
prunus_persica	Prupe.8G190300_v2.0.a1 Prupe.8G190300_v2.0.a1
pyrus_communis	pycom10g13090
rosa_chinensis	RchiOBHm_Chr6g0282821
rosa_laevigata	RLG00000012865
rosa_multiflora	Rmu_sc0006070.1_g000012
rosa_roxburghii	Rroxscaffold_7G00185970
rosa_rugosa	Rorug06G0149800
rosa_samantha	Rh6AG263100 Rh6BG266000 Rh6CG265200 Rh6DG257800
rosa_wichuraiana	Rw6G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	280
AccB1I	GGYRCC	1 cut(s)	158
AccI	GTMKAC	1 cut(s)	58
AciI	CCGC	5 cut(s)	136, 148, 156, 174, 177
AclWI	GGATC	1 cut(s)	442
AcsI	RAATTY	2 cut(s)	86, 868
AcuI	CTGAAG	3 cut(s)	89, 375, 1159
AfaI	GTAC	1 cut(s)	321
AfiI	CCNNNNNNNGG	1 cut(s)	191
AflIII	ACRYGT	1 cut(s)	547
AgsI	TTSAA	3 cut(s)	308, 554, 1168
AjnI	CCWGG	3 cut(s)	699, 912, 1054
AjuI	GAANNNNNNNTTGG	2 cut(s)	87, 119
AluBI	AGCT	7 cut(s)	26, 103, 221, 240, 674, 791, 890
AluI	AGCT	7 cut(s)	26, 103, 221, 240, 674, 791, 890
Alw26I	GTCTC	6 cut(s)	492, 503, 713, 1064, 1081, 1117
AlwI	GGATC	1 cut(s)	442
AlwNI	CAGNNNCTG	1 cut(s)	145
Ama87I	CYCGRG	1 cut(s)	225
AoxI	GGCC	3 cut(s)	417, 562, 734
ApeKI	GCWGC	7 cut(s)	26, 133, 145, 221, 377, 620, 674
ApoI	RAATTY	2 cut(s)	86, 868
Asp700I	GAANNNNTTC	2 cut(s)	270, 1172
AspA2I	CCTAGG	1 cut(s)	391
AspLEI	GCGC	3 cut(s)	203, 483, 1053
AspS9I	GGNCC	1 cut(s)	388
AsuC2I	CCSGG	2 cut(s)	185, 900
AsuHPI	GGTGA	3 cut(s)	296, 511, 877
AvaI	CYCGRG	1 cut(s)	225
AvaII	GGWCC	1 cut(s)	388
AvrII	CCTAGG	1 cut(s)	391
BanI	GGYRCC	1 cut(s)	158
BbsI	GAAGAC	2 cut(s)	911, 1165
BbvCI	CCTCAGC	1 cut(s)	99
BbvI	GCAGC	7 cut(s)	13, 132, 145, 208, 364, 607, 661
BccI	CCATC	3 cut(s)	424, 796, 977
BciT130I	CCWGG	3 cut(s)	701, 914, 1056
BciVI	GTATCC	1 cut(s)	173
BclI	TGATCA	2 cut(s)	501, 777
BcnI	CCSGG	2 cut(s)	185, 900
BcoDI	GTCTC	6 cut(s)	492, 503, 713, 1064, 1081, 1117
BfaI	CTAG	5 cut(s)	392, 437, 818, 966, 1136
BfmI	CTRYAG	2 cut(s)	571, 738
BfuAI	ACCTGC	1 cut(s)	280
BfuI	GTATCC	1 cut(s)	173
BlnI	CCTAGG	1 cut(s)	391
Bme1390I	CCNGG	5 cut(s)	185, 701, 900, 914, 1056
Bme18I	GGWCC	1 cut(s)	388
BmeT110I	CYCGRG	1 cut(s)	225
BmgT120I	GGNCC	1 cut(s)	388
BmiI	GGNNCC	3 cut(s)	160, 252, 389
BmrFI	CCNGG	5 cut(s)	185, 701, 900, 914, 1056
BmsI	GCATC	3 cut(s)	120, 359, 1141
BpiI	GAAGAC	2 cut(s)	911, 1165
BplI	GAGNNNNNCTC	2 cut(s)	1061, 1093
BpmI	CTGGAG	1 cut(s)	737
Bpu10I	CCTNAGC	1 cut(s)	99
BpuEI	CTTGAG	1 cut(s)	1088
BpuMI	CCSGG	2 cut(s)	185, 900
BsaJI	CCNNGG	5 cut(s)	391, 861, 899, 1054, 1080
Bsc4I	CCNNNNNNNGG	1 cut(s)	191
Bse118I	RCCGGY	1 cut(s)	623
Bse1I	ACTGG	4 cut(s)	420, 720, 888, 994
BseBI	CCWGG	3 cut(s)	701, 914, 1056
BseDI	CCNNGG	5 cut(s)	391, 861, 899, 1054, 1080
BseGI	GGATG	2 cut(s)	193, 349
BseLI	CCNNNNNNNGG	1 cut(s)	191
BseMII	CTCAG	2 cut(s)	113, 289
BseNI	ACTGG	4 cut(s)	420, 720, 888, 994
BseXI	GCAGC	7 cut(s)	13, 132, 145, 208, 364, 607, 661
BseYI	CCCAGC	2 cut(s)	22, 43
BsgI	GTGCAG	2 cut(s)	12, 363
BshFI	GGCC	3 cut(s)	419, 564, 736
BshNI	GGYRCC	1 cut(s)	158
BsiHKCI	CYCGRG	1 cut(s)	225
BsiSI	CCGG	3 cut(s)	185, 624, 899
BslI	CCNNNNNNNGG	1 cut(s)	191
BsmAI	GTCTC	6 cut(s)	492, 503, 713, 1064, 1081, 1117
BsnI	GGCC	3 cut(s)	419, 564, 736
BsoBI	CYCGRG	1 cut(s)	225
Bsp143I	GATC	6 cut(s)	315, 447, 501, 748, 777, 832
BspACI	CCGC	5 cut(s)	136, 148, 156, 174, 177
BspANI	GGCC	3 cut(s)	419, 564, 736
BspCNI	CTCAG	2 cut(s)	112, 288
BspHI	TCATGA	1 cut(s)	426
BspLI	GGNNCC	3 cut(s)	160, 252, 389
BspMAI	CTGCAG	1 cut(s)	575
BspMI	ACCTGC	1 cut(s)	280
BspPI	GGATC	1 cut(s)	442
BspT107I	GGYRCC	1 cut(s)	158
BsrFI	RCCGGY	1 cut(s)	623
BsrI	ACTGG	4 cut(s)	420, 720, 888, 994
BssAI	RCCGGY	1 cut(s)	623
BssECI	CCNNGG	5 cut(s)	391, 861, 899, 1054, 1080
BssMI	GATC	6 cut(s)	315, 447, 501, 748, 777, 832
BssT1I	CCWWGG	2 cut(s)	391, 1080
Bst2UI	CCWGG	3 cut(s)	701, 914, 1056
Bst4CI	ACNGT	4 cut(s)	464, 514, 910, 1075
Bst6I	CTCTTC	4 cut(s)	303, 351, 392, 855
BstAPI	GCANNNNNTGC	1 cut(s)	145
BstC8I	GCNNGC	3 cut(s)	255, 596, 762
BstDEI	CTNAG	3 cut(s)	99, 275, 1087
BstF5I	GGATG	2 cut(s)	193, 349
BstHHI	GCGC	3 cut(s)	203, 483, 1053
BstKTI	GATC	6 cut(s)	318, 450, 504, 751, 780, 835
BstMAI	GTCTC	6 cut(s)	492, 503, 713, 1064, 1081, 1117
BstMBI	GATC	6 cut(s)	315, 447, 501, 748, 777, 832
BstMWI	GCNNNNNNNGC	4 cut(s)	142, 145, 570, 701
BstNI	CCWGG	3 cut(s)	701, 914, 1056
BstNSI	RCATGY	2 cut(s)	551, 1063
BstSCI	CCNGG	5 cut(s)	183, 699, 898, 912, 1054
BstSFI	CTRYAG	2 cut(s)	571, 738
BstV1I	GCAGC	7 cut(s)	13, 132, 145, 208, 364, 607, 661
BstV2I	GAAGAC	2 cut(s)	911, 1165
BsuI	GTATCC	1 cut(s)	173
BsuRI	GGCC	3 cut(s)	419, 564, 736
BtsCI	GGATG	2 cut(s)	193, 349
BtsI	GCAGTG	2 cut(s)	372, 976
BtsIMutI	CAGTG	4 cut(s)	372, 469, 976, 987
BveI	ACCTGC	1 cut(s)	280
Cac8I	GCNNGC	3 cut(s)	255, 596, 762
CaiI	CAGNNNCTG	1 cut(s)	145
CciI	TCATGA	1 cut(s)	426
CfoI	GCGC	3 cut(s)	203, 483, 1053
Cfr10I	RCCGGY	1 cut(s)	623
Cfr13I	GGNCC	1 cut(s)	388
CseI	GACGC	1 cut(s)	151
Csp6I	GTAC	1 cut(s)	320
CviAII	CATG	6 cut(s)	340, 427, 445, 548, 665, 1060
CviQI	GTAC	1 cut(s)	320
DdeI	CTNAG	3 cut(s)	99, 275, 1087
DpnI	GATC	6 cut(s)	317, 449, 503, 750, 779, 834
DpnII	GATC	6 cut(s)	315, 447, 501, 748, 777, 832
DraI	TTTAAA	2 cut(s)	640, 894
Eam1104I	CTCTTC	4 cut(s)	303, 351, 392, 855
EarI	CTCTTC	4 cut(s)	303, 351, 392, 855
EciI	GGCGGA	1 cut(s)	192
Eco130I	CCWWGG	2 cut(s)	391, 1080
Eco47I	GGWCC	1 cut(s)	388
Eco57I	CTGAAG	3 cut(s)	89, 375, 1159
Eco88I	CYCGRG	1 cut(s)	225
EcoO109I	RGGNCCY	1 cut(s)	388
EcoRII	CCWGG	3 cut(s)	699, 912, 1054
EcoT14I	CCWWGG	2 cut(s)	391, 1080
ErhI	CCWWGG	2 cut(s)	391, 1080
FaeI	CATG	6 cut(s)	343, 430, 448, 551, 668, 1063
FatI	CATG	6 cut(s)	339, 426, 444, 547, 664, 1059
FbaI	TGATCA	2 cut(s)	501, 777
FblI	GTMKAC	1 cut(s)	58
FokI	GGATG	2 cut(s)	200, 356
FspBI	CTAG	5 cut(s)	392, 437, 818, 966, 1136
GlaI	GCGC	3 cut(s)	202, 482, 1052
GsaI	CCCAGC	2 cut(s)	26, 47
GsuI	CTGGAG	1 cut(s)	737
HaeIII	GGCC	3 cut(s)	419, 564, 736
HapII	CCGG	3 cut(s)	185, 624, 899
HgaI	GACGC	1 cut(s)	151
HhaI	GCGC	3 cut(s)	203, 483, 1053
Hin1II	CATG	6 cut(s)	343, 430, 448, 551, 668, 1063
Hin6I	GCGC	3 cut(s)	201, 481, 1051
HinP1I	GCGC	3 cut(s)	201, 481, 1051
HinfI	GANTC	2 cut(s)	402, 857
HpaII	CCGG	3 cut(s)	185, 624, 899
HphI	GGTGA	3 cut(s)	296, 511, 877
Hpy166II	GTNNAC	2 cut(s)	40, 59
Hpy188I	TCNGA	6 cut(s)	278, 355, 782, 795, 862, 1157
Hpy188III	TCNNGA	9 cut(s)	305, 427, 437, 746, 854, 1029, 1067, 1136, 1177
Hpy8I	GTNNAC	2 cut(s)	40, 59
Hpy99I	CGWCG	1 cut(s)	1000
HpyAV	CCTTC	5 cut(s)	185, 281, 932, 944, 1008
HpyCH4III	ACNGT	4 cut(s)	464, 514, 910, 1075
HpyCH4V	TGCA	6 cut(s)	29, 133, 380, 573, 677, 764
HpyF10VI	GCNNNNNNNGC	4 cut(s)	142, 145, 570, 701
HpyF3I	CTNAG	3 cut(s)	99, 275, 1087
Hsp92II	CATG	6 cut(s)	343, 430, 448, 551, 668, 1063
HspAI	GCGC	3 cut(s)	201, 481, 1051
Ksp22I	TGATCA	2 cut(s)	501, 777
Kzo9I	GATC	6 cut(s)	315, 447, 501, 748, 777, 832
LmnI	GCTCC	1 cut(s)	250
Lsp1109I	GCAGC	7 cut(s)	13, 132, 145, 208, 364, 607, 661
LweI	GCATC	3 cut(s)	120, 359, 1141
MaeI	CTAG	5 cut(s)	392, 437, 818, 966, 1136
MaeIII	GTNAC	2 cut(s)	292, 464
MalI	GATC	6 cut(s)	317, 449, 503, 750, 779, 834
MboI	GATC	6 cut(s)	315, 447, 501, 748, 777, 832
MluCI	AATT	7 cut(s)	48, 86, 245, 372, 602, 868, 1005
MlyI	GAGTC	1 cut(s)	411
MmeI	TCCRAC	1 cut(s)	475
MroXI	GAANNNNTTC	2 cut(s)	270, 1172
MseI	TTAA	6 cut(s)	584, 639, 684, 843, 875, 893
MspA1I	CMGCKG	3 cut(s)	26, 136, 674
MspI	CCGG	3 cut(s)	185, 624, 899
MspR9I	CCNGG	5 cut(s)	185, 701, 900, 914, 1056
MvaI	CCWGG	3 cut(s)	701, 914, 1056
MwoI	GCNNNNNNNGC	4 cut(s)	142, 145, 570, 701
NciI	CCSGG	2 cut(s)	185, 900
NdeII	GATC	6 cut(s)	315, 447, 501, 748, 777, 832
NlaIII	CATG	6 cut(s)	343, 430, 448, 551, 668, 1063
NlaIV	GGNNCC	3 cut(s)	160, 252, 389
NmeAIII	GCCGAG	1 cut(s)	712
NmuCI	GTSAC	2 cut(s)	292, 464
NspI	RCATGY	2 cut(s)	551, 1063
PagI	TCATGA	1 cut(s)	426
PciI	ACATGT	1 cut(s)	547
PdmI	GAANNNNTTC	2 cut(s)	270, 1172
PfeI	GAWTC	1 cut(s)	857
PfoI	TCCNGGA	1 cut(s)	912
PleI	GAGTC	1 cut(s)	410
PpsI	GAGTC	1 cut(s)	410
PpuMI	RGGWCCY	1 cut(s)	388
PscI	ACATGT	1 cut(s)	547
Psp5II	RGGWCCY	1 cut(s)	388
Psp6I	CCWGG	3 cut(s)	699, 912, 1054
PspFI	CCCAGC	2 cut(s)	22, 43
PspGI	CCWGG	3 cut(s)	699, 912, 1054
PspN4I	GGNNCC	3 cut(s)	160, 252, 389
PspPI	GGNCC	1 cut(s)	388
PspPPI	RGGWCCY	1 cut(s)	388
PstI	CTGCAG	1 cut(s)	575
PstNI	CAGNNNCTG	1 cut(s)	145
PvuII	CAGCTG	2 cut(s)	26, 674
RsaI	GTAC	1 cut(s)	321
RsaNI	GTAC	1 cut(s)	320
SaqAI	TTAA	6 cut(s)	584, 639, 684, 843, 875, 893
Sau3AI	GATC	6 cut(s)	315, 447, 501, 748, 777, 832
Sau96I	GGNCC	1 cut(s)	388
SchI	GAGTC	1 cut(s)	411
ScrFI	CCNGG	5 cut(s)	185, 701, 900, 914, 1056
SfaNI	GCATC	3 cut(s)	120, 359, 1141
SfcI	CTRYAG	2 cut(s)	571, 738
SinI	GGWCC	1 cut(s)	388
SmlI	CTYRAG	1 cut(s)	1067
SmoI	CTYRAG	1 cut(s)	1067
Sse9I	AATT	7 cut(s)	48, 86, 245, 372, 602, 868, 1005
SsiI	CCGC	5 cut(s)	136, 148, 156, 174, 177
SspMI	CTAG	5 cut(s)	392, 437, 818, 966, 1136
StyD4I	CCNGG	5 cut(s)	183, 699, 898, 912, 1054
StyI	CCWWGG	2 cut(s)	391, 1080
TaaI	ACNGT	4 cut(s)	464, 514, 910, 1075
TaqI	TCGA	2 cut(s)	405, 751
TasI	AATT	7 cut(s)	48, 86, 245, 372, 602, 868, 1005
TauI	GCSGC	3 cut(s)	139, 159, 177
TfiI	GAWTC	1 cut(s)	857
Tru1I	TTAA	6 cut(s)	584, 639, 684, 843, 875, 893
Tru9I	TTAA	6 cut(s)	584, 639, 684, 843, 875, 893
TscAI	CASTG	4 cut(s)	372, 469, 976, 994
TseFI	GTSAC	2 cut(s)	292, 464
TseI	GCWGC	7 cut(s)	26, 133, 145, 221, 377, 620, 674
Tsp45I	GTSAC	2 cut(s)	292, 464
TspDTI	ATGAA	8 cut(s)	6, 204, 350, 415, 423, 653, 963, 1141
TspRI	CASTG	4 cut(s)	372, 469, 976, 994
VpaK11BI	GGWCC	1 cut(s)	388
XapI	RAATTY	2 cut(s)	86, 868
XbaI	TCTAGA	2 cut(s)	436, 1135
XceI	RCATGY	2 cut(s)	551, 1063
XcmI	CCANNNNNNNNNTGG	1 cut(s)	427
XmaJI	CCTAGG	1 cut(s)	391
XmiI	GTMKAC	1 cut(s)	58
XmnI	GAANNNNTTC	2 cut(s)	270, 1172
XspI	CTAG	5 cut(s)	392, 437, 818, 966, 1136

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.