Basic Information

Type: gene

Biological Identity

Species

prunus_persica

Chromosome

Pp08

Orthogroup ID

OG0012361

Physical Location & Seq

Genomic Coordinates Reverse (-)

18543200 .. 18547731

Gene Structure 4532 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Prupe.8G190300.2

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1236 bp

ATGTTGCAGAGCAGCAACATGTTTCCCAGTTGTTCGTACCCATCTGCACAAACTCTAAACCCAACCATTAATTCTCCTTCTCTCCTCTCTTTCCCTTCATTTTCATTCACCACAGTGTGCTCTCGCCACAACAATTTGCCCCAACCTCAGTTTCAAGCAAAGCAACCCAACAAGAAGAAGAAGAGGCAGATGCTGCGCTTCTGTGGGACTTATGAGGTGGGTGGAGGCTACCCAGATGAGGAATTGGGTGGGCAAGAGAAGAGTAGAACTACCCAAGAGCAAGGCAACTCAAAATTGGACACTGCCCAGTATGAAGCTCTTCTCAAAGGTGGTGACCAAGTCACTTCTGTTCTTGAAGAGATGATCACCCTTTTGGAAGATATGAACATGGATGAGGCATCTGAAGAGGTGGCAGTGGAAATAGCTGCACAAGGGGTCCTAGGGAAGAGAGTTGATGAGATGGAGTCGGGTTTCATGTTGGCGCTAGATTACATGATCCAACTTGCTGAGAATGACCAAGATGATAAGCGCAAGTCATTATTGGAGGTGATCAAGGAGACAGTATTATCCTATCTTACGAAAAAATGCCCCCCGCATGTTCAAGTGGTTGGCCTGCTCTGTAGAACTCCTCAGAAAGAAAGCAGACAGGAATTACTACGCAGAGTGGCTGCAGGTGGTGGTGTGTTCAAAAGTAAGAATGACATAAAAGTTCATGTTCCAGCTGCAAATCTTAATGATATTGCTAACCAGGCTGATGATATACTGGAGACAATGGAAACTCGGCCTGTAGTTCCAGATCGAAAACTGCTTGCAAGACTTGTTTTAATCAGAGAGGAAGCTCGGAATATGATGGGAGGTGGATTACTAGATGAGAGAAATGATCGTGGCTTTAACACTCTTCCAGAATCCGAGGTGAACTTCTTAACCAAACTTGTAGCTTTGAAACCGGGGAAGACTGTCCAGGAGATGATAAAAAATGTAATGGAAGGAAAAAATGAAGGTGCTGATGATGCTAGCAGTGATGAGGTAGATACCACTGGTAGAACGAGTGGAATTGCAGGAAGGGAAAGCGTTACAGGACGAAAAGCTCTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAGGTCTTAGGTGGTATATATGCAGGAAATGTCTCTGGTATCACCGCACAACATCTAGAATGGGTTCATCAGAAGACACTTGAAGTTCTTCAGGAGATAGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

412

Amino Acids

45.34

Weight (kDa)

5.36

Isoelectric Point (pI)

40.46

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48470
fragaria_vesca	FvH4_2g17800 FvH4_2g17800 FvH4_2g17800
malus_domestica	MD05G1159400.v1.1 MD10G1151900.v1.1
prunus_persica	Prupe.8G190300_v2.0.a1 Prupe.8G190300_v2.0.a1
pyrus_communis	pycom10g13090
rosa_chinensis	RchiOBHm_Chr6g0282821
rosa_laevigata	RLG00000012865
rosa_multiflora	Rmu_sc0006070.1_g000012
rosa_roxburghii	Rroxscaffold_7G00185970
rosa_rugosa	Rorug06G0149800
rosa_samantha	Rh6AG263100 Rh6BG266000 Rh6CG265200 Rh6DG257800
rosa_wichuraiana	Rw6G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AarI	CACCTGC	1 cut(s)	662
Acc36I	ACCTGC	1 cut(s)	662
AciI	CCGC	2 cut(s)	593, 1173
AclWI	GGATC	1 cut(s)	490
AcuI	CTGAAG	2 cut(s)	423, 1202
AdeI	CACNNNGTG	1 cut(s)	117
AfaI	GTAC	1 cut(s)	38
AfiI	CCNNNNNNNGG	1 cut(s)	238
AflIII	ACRYGT	1 cut(s)	18
AgsI	TTSAA	6 cut(s)	155, 356, 602, 688, 943, 1211
AjnI	CCWGG	3 cut(s)	747, 960, 1102
AjuI	GAANNNNNNNTTGG	4 cut(s)	55, 87, 135, 167
AleI	CACNNNNGTG	1 cut(s)	113
AluBI	AGCT	6 cut(s)	317, 425, 722, 839, 938, 1088
AluI	AGCT	6 cut(s)	317, 425, 722, 839, 938, 1088
Alw21I	GWGCWC	1 cut(s)	122
Alw26I	GTCTC	5 cut(s)	551, 761, 1112, 1129, 1165
AlwI	GGATC	1 cut(s)	490
AlwNI	CAGNNNCTG	1 cut(s)	193
AoxI	GGCC	2 cut(s)	610, 782
ApeKI	GCWGC	5 cut(s)	12, 193, 425, 668, 722
AseI	ATTAAT	1 cut(s)	69
Asp700I	GAANNNNTTC	3 cut(s)	318, 1191, 1215
AspA2I	CCTAGG	1 cut(s)	439
AspLEI	GCGC	4 cut(s)	198, 484, 531, 1101
AspS9I	GGNCC	1 cut(s)	436
AsuC2I	CCSGG	1 cut(s)	948
AsuHPI	GGTGA	6 cut(s)	100, 344, 358, 559, 925, 1162
AsuNHI	GCTAGC	1 cut(s)	1013
AvaII	GGWCC	1 cut(s)	436
AvrII	CCTAGG	1 cut(s)	439
BbsI	GAAGAC	2 cut(s)	959, 1208
Bbv12I	GWGCWC	1 cut(s)	122
BbvI	GCAGC	5 cut(s)	24, 180, 412, 655, 709
BccI	CCATC	3 cut(s)	49, 454, 844
BciT130I	CCWGG	3 cut(s)	749, 962, 1104
BclI	TGATCA	2 cut(s)	363, 549
BcnI	CCSGG	1 cut(s)	948
BcoDI	GTCTC	5 cut(s)	551, 761, 1112, 1129, 1165
BfaI	CTAG	5 cut(s)	440, 485, 866, 1014, 1184
BfmI	CTRYAG	3 cut(s)	619, 669, 786
BfoI	RGCGCY	1 cut(s)	485
BfuAI	ACCTGC	1 cut(s)	662
BisI	GCNGC	5 cut(s)	13, 194, 426, 669, 723
BlnI	CCTAGG	1 cut(s)	439
BlsI	GCNGC	5 cut(s)	14, 195, 427, 670, 724
Bme1390I	CCNGG	4 cut(s)	749, 948, 962, 1104
Bme18I	GGWCC	1 cut(s)	436
BmgT120I	GGNCC	1 cut(s)	436
BmiI	GGNNCC	1 cut(s)	437
BmrFI	CCNGG	4 cut(s)	749, 948, 962, 1104
BmrI	ACTGGG	2 cut(s)	21, 301
BmsI	GCATC	3 cut(s)	180, 407, 1000
BmtI	GCTAGC	1 cut(s)	1017
BmuI	ACTGGG	2 cut(s)	21, 301
BpiI	GAAGAC	2 cut(s)	959, 1208
BplI	GAGNNNNNCTC	2 cut(s)	1109, 1141
BpmI	CTGGAG	1 cut(s)	785
BpuEI	CTTGAG	1 cut(s)	1136
BpuMI	CCSGG	1 cut(s)	948
BsaJI	CCNNGG	5 cut(s)	439, 909, 947, 1102, 1128
Bsc4I	CCNNNNNNNGG	1 cut(s)	238
Bse1I	ACTGG	4 cut(s)	27, 307, 768, 1042
BseBI	CCWGG	3 cut(s)	749, 962, 1104
BseDI	CCNNGG	5 cut(s)	439, 909, 947, 1102, 1128
BseGI	GGATG	1 cut(s)	397
BseLI	CCNNNNNNNGG	1 cut(s)	238
BseMII	CTCAG	3 cut(s)	161, 498, 644
BseNI	ACTGG	4 cut(s)	27, 307, 768, 1042
BseRI	GAGGAG	2 cut(s)	74, 618
BseXI	GCAGC	5 cut(s)	24, 180, 412, 655, 709
BsgI	GTGCAG	2 cut(s)	30, 411
BshFI	GGCC	2 cut(s)	612, 784
BsiHKAI	GWGCWC	1 cut(s)	122
BsiSI	CCGG	1 cut(s)	947
BslFI	GGGAC	1 cut(s)	220
BslI	CCNNNNNNNGG	1 cut(s)	238
BsmAI	GTCTC	5 cut(s)	551, 761, 1112, 1129, 1165
BsmFI	GGGAC	1 cut(s)	220
BsnI	GGCC	2 cut(s)	612, 784
Bsp1286I	GDGCHC	1 cut(s)	122
Bsp143I	GATC	5 cut(s)	363, 495, 549, 796, 880
BspACI	CCGC	2 cut(s)	593, 1173
BspANI	GGCC	2 cut(s)	612, 784
BspCNI	CTCAG	3 cut(s)	160, 499, 643
BspLI	GGNNCC	1 cut(s)	437
BspMAI	CTGCAG	1 cut(s)	673
BspMI	ACCTGC	1 cut(s)	662
BspOI	GCTAGC	1 cut(s)	1017
BspPI	GGATC	1 cut(s)	490
BspQI	GCTCTTC	2 cut(s)	324, 1095
BsrI	ACTGG	4 cut(s)	27, 307, 768, 1042
BssECI	CCNNGG	5 cut(s)	439, 909, 947, 1102, 1128
BssMI	GATC	5 cut(s)	363, 495, 549, 796, 880
BssT1I	CCWWGG	2 cut(s)	439, 1128
Bst2UI	CCWGG	3 cut(s)	749, 962, 1104
Bst4CI	ACNGT	4 cut(s)	115, 562, 958, 1123
Bst6I	CTCTTC	8 cut(s)	176, 254, 324, 351, 399, 440, 903, 1095
BstAPI	GCANNNNNTGC	1 cut(s)	193
BstC8I	GCNNGC	3 cut(s)	614, 810, 1015
BstDEI	CTNAG	4 cut(s)	147, 507, 630, 1135
BstEII	GGTNACC	1 cut(s)	332
BstF5I	GGATG	1 cut(s)	397
BstH2I	RGCGCY	1 cut(s)	485
BstHHI	GCGC	4 cut(s)	198, 484, 531, 1101
BstKTI	GATC	5 cut(s)	366, 498, 552, 799, 883
BstMAI	GTCTC	5 cut(s)	551, 761, 1112, 1129, 1165
BstMBI	GATC	5 cut(s)	363, 495, 549, 796, 880
BstMWI	GCNNNNNNNGC	3 cut(s)	193, 749, 1010
BstNI	CCWGG	3 cut(s)	749, 962, 1104
BstNSI	RCATGY	3 cut(s)	22, 599, 1111
BstPI	GGTNACC	1 cut(s)	332
BstSCI	CCNGG	4 cut(s)	747, 946, 960, 1102
BstSFI	CTRYAG	3 cut(s)	619, 669, 786
BstV1I	GCAGC	5 cut(s)	24, 180, 412, 655, 709
BstV2I	GAAGAC	2 cut(s)	959, 1208
BsuRI	GGCC	2 cut(s)	612, 784
BtsCI	GGATG	1 cut(s)	397
BtsI	GCAGTG	3 cut(s)	300, 420, 1024
BtsIMutI	CAGTG	5 cut(s)	120, 300, 420, 1024, 1035
BveI	ACCTGC	1 cut(s)	662
Cac8I	GCNNGC	3 cut(s)	614, 810, 1015
CaiI	CAGNNNCTG	1 cut(s)	193
CfoI	GCGC	4 cut(s)	198, 484, 531, 1101
Cfr13I	GGNCC	1 cut(s)	436
Csp6I	GTAC	1 cut(s)	37
CviAII	CATG	7 cut(s)	19, 388, 475, 493, 596, 713, 1108
CviQI	GTAC	1 cut(s)	37
DdeI	CTNAG	4 cut(s)	147, 507, 630, 1135
DpnI	GATC	5 cut(s)	365, 497, 551, 798, 882
DpnII	GATC	5 cut(s)	363, 495, 549, 796, 880
DraIII	CACNNNGTG	1 cut(s)	117
Eam1104I	CTCTTC	8 cut(s)	176, 254, 324, 351, 399, 440, 903, 1095
EarI	CTCTTC	8 cut(s)	176, 254, 324, 351, 399, 440, 903, 1095
Eco130I	CCWWGG	2 cut(s)	439, 1128
Eco47I	GGWCC	1 cut(s)	436
Eco57I	CTGAAG	2 cut(s)	423, 1202
Eco91I	GGTNACC	1 cut(s)	332
EcoO109I	RGGNCCY	1 cut(s)	436
EcoO65I	GGTNACC	1 cut(s)	332
EcoRII	CCWGG	3 cut(s)	747, 960, 1102
EcoT14I	CCWWGG	2 cut(s)	439, 1128
ErhI	CCWWGG	2 cut(s)	439, 1128
FaeI	CATG	7 cut(s)	22, 391, 478, 496, 599, 716, 1111
FaqI	GGGAC	1 cut(s)	220
FatI	CATG	7 cut(s)	18, 387, 474, 492, 595, 712, 1107
FauI	CCCGC	1 cut(s)	600
FbaI	TGATCA	2 cut(s)	363, 549
Fnu4HI	GCNGC	5 cut(s)	13, 194, 426, 669, 723
FokI	GGATG	1 cut(s)	404
Fsp4HI	GCNGC	5 cut(s)	13, 194, 426, 669, 723
FspBI	CTAG	5 cut(s)	440, 485, 866, 1014, 1184
GlaI	GCGC	4 cut(s)	197, 483, 530, 1100
GluI	GCNGC	5 cut(s)	13, 194, 426, 669, 723
GsuI	CTGGAG	1 cut(s)	785
HaeII	RGCGCY	1 cut(s)	485
HaeIII	GGCC	2 cut(s)	612, 784
HapII	CCGG	1 cut(s)	947
HhaI	GCGC	4 cut(s)	198, 484, 531, 1101
Hin1II	CATG	7 cut(s)	22, 391, 478, 496, 599, 716, 1111
Hin6I	GCGC	4 cut(s)	196, 482, 529, 1099
HinP1I	GCGC	4 cut(s)	196, 482, 529, 1099
HinfI	GANTC	2 cut(s)	464, 905
HpaII	CCGG	1 cut(s)	947
HphI	GGTGA	6 cut(s)	100, 344, 358, 559, 925, 1162
Hpy166II	GTNNAC	1 cut(s)	916
Hpy188I	TCNGA	6 cut(s)	403, 633, 830, 843, 910, 1200
Hpy188III	TCNNGA	6 cut(s)	353, 794, 902, 1115, 1184, 1220
Hpy8I	GTNNAC	1 cut(s)	916
HpyAV	CCTTC	5 cut(s)	87, 105, 980, 992, 1056
HpyCH4III	ACNGT	4 cut(s)	115, 562, 958, 1123
HpyCH4V	TGCA	8 cut(s)	7, 47, 428, 671, 725, 812, 1058, 1151
HpyF10VI	GCNNNNNNNGC	3 cut(s)	193, 749, 1010
HpyF3I	CTNAG	4 cut(s)	147, 507, 630, 1135
Hsp92II	CATG	7 cut(s)	22, 391, 478, 496, 599, 716, 1111
HspAI	GCGC	4 cut(s)	196, 482, 529, 1099
Ksp22I	TGATCA	2 cut(s)	363, 549
Kzo9I	GATC	5 cut(s)	363, 495, 549, 796, 880
LguI	GCTCTTC	2 cut(s)	324, 1095
Lsp1109I	GCAGC	5 cut(s)	24, 180, 412, 655, 709
LweI	GCATC	3 cut(s)	180, 407, 1000
MaeI	CTAG	5 cut(s)	440, 485, 866, 1014, 1184
MaeIII	GTNAC	3 cut(s)	332, 340, 1072
MalI	GATC	5 cut(s)	365, 497, 551, 798, 882
MboI	GATC	5 cut(s)	363, 495, 549, 796, 880
MhlI	GDGCHC	1 cut(s)	122
MluCI	AATT	6 cut(s)	70, 133, 242, 293, 650, 1053
MlyI	GAGTC	1 cut(s)	473
MmeI	TCCRAC	1 cut(s)	523
MroXI	GAANNNNTTC	3 cut(s)	318, 1191, 1215
MseI	TTAA	5 cut(s)	69, 732, 824, 891, 923
MslI	CAYNNNNRTG	1 cut(s)	113
MspA1I	CMGCKG	1 cut(s)	722
MspI	CCGG	1 cut(s)	947
MspR9I	CCNGG	4 cut(s)	749, 948, 962, 1104
MvaI	CCWGG	3 cut(s)	749, 962, 1104
MwoI	GCNNNNNNNGC	3 cut(s)	193, 749, 1010
NciI	CCSGG	1 cut(s)	948
NdeII	GATC	5 cut(s)	363, 495, 549, 796, 880
NheI	GCTAGC	1 cut(s)	1013
NlaIII	CATG	7 cut(s)	22, 391, 478, 496, 599, 716, 1111
NlaIV	GGNNCC	1 cut(s)	437
NmeAIII	GCCGAG	1 cut(s)	760
NmuCI	GTSAC	2 cut(s)	332, 340
NspI	RCATGY	3 cut(s)	22, 599, 1111
OliI	CACNNNNGTG	1 cut(s)	113
PaqCI	CACCTGC	1 cut(s)	662
PciI	ACATGT	1 cut(s)	18
PciSI	GCTCTTC	2 cut(s)	324, 1095
PdmI	GAANNNNTTC	3 cut(s)	318, 1191, 1215
PfeI	GAWTC	1 cut(s)	905
PflFI	GACNNNGTC	1 cut(s)	338
PfoI	TCCNGGA	1 cut(s)	960
PkrI	GCNGC	5 cut(s)	14, 195, 427, 670, 724
PleI	GAGTC	1 cut(s)	472
PpsI	GAGTC	1 cut(s)	472
PpuMI	RGGWCCY	1 cut(s)	436
PscI	ACATGT	1 cut(s)	18
PshBI	ATTAAT	1 cut(s)	69
Psp5II	RGGWCCY	1 cut(s)	436
Psp6I	CCWGG	3 cut(s)	747, 960, 1102
PspEI	GGTNACC	1 cut(s)	332
PspGI	CCWGG	3 cut(s)	747, 960, 1102
PspN4I	GGNNCC	1 cut(s)	437
PspPI	GGNCC	1 cut(s)	436
PspPPI	RGGWCCY	1 cut(s)	436
PstI	CTGCAG	1 cut(s)	673
PstNI	CAGNNNCTG	1 cut(s)	193
PsyI	GACNNNGTC	1 cut(s)	338
PvuII	CAGCTG	1 cut(s)	722
RsaI	GTAC	1 cut(s)	38
RsaNI	GTAC	1 cut(s)	37
RseI	CAYNNNNRTG	1 cut(s)	113
SapI	GCTCTTC	2 cut(s)	324, 1095
SaqAI	TTAA	5 cut(s)	69, 732, 824, 891, 923
SatI	GCNGC	5 cut(s)	13, 194, 426, 669, 723
Sau3AI	GATC	5 cut(s)	363, 495, 549, 796, 880
Sau96I	GGNCC	1 cut(s)	436
SchI	GAGTC	1 cut(s)	473
ScrFI	CCNGG	4 cut(s)	749, 948, 962, 1104
SduI	GDGCHC	1 cut(s)	122
SfaNI	GCATC	3 cut(s)	180, 407, 1000
SfcI	CTRYAG	3 cut(s)	619, 669, 786
SinI	GGWCC	1 cut(s)	436
SmiMI	CAYNNNNRTG	1 cut(s)	113
SmlI	CTYRAG	1 cut(s)	1115
SmoI	CTYRAG	1 cut(s)	1115
Sse9I	AATT	6 cut(s)	70, 133, 242, 293, 650, 1053
SsiI	CCGC	2 cut(s)	593, 1173
SspMI	CTAG	5 cut(s)	440, 485, 866, 1014, 1184
StyD4I	CCNGG	4 cut(s)	747, 946, 960, 1102
StyI	CCWWGG	2 cut(s)	439, 1128
TaaI	ACNGT	4 cut(s)	115, 562, 958, 1123
TaqI	TCGA	1 cut(s)	799
TasI	AATT	6 cut(s)	70, 133, 242, 293, 650, 1053
TfiI	GAWTC	1 cut(s)	905
Tru1I	TTAA	5 cut(s)	69, 732, 824, 891, 923
Tru9I	TTAA	5 cut(s)	69, 732, 824, 891, 923
TscAI	CASTG	5 cut(s)	120, 307, 420, 1024, 1042
TseFI	GTSAC	2 cut(s)	332, 340
TseI	GCWGC	5 cut(s)	12, 193, 425, 668, 722
Tsp45I	GTSAC	2 cut(s)	332, 340
TspDTI	ATGAA	8 cut(s)	87, 93, 327, 398, 463, 701, 1011, 1184
TspRI	CASTG	5 cut(s)	120, 307, 420, 1024, 1042
Tth111I	GACNNNGTC	1 cut(s)	338
VpaK11BI	GGWCC	1 cut(s)	436
VspI	ATTAAT	1 cut(s)	69
XbaI	TCTAGA	1 cut(s)	1183
XceI	RCATGY	3 cut(s)	22, 599, 1111
XmaJI	CCTAGG	1 cut(s)	439
XmnI	GAANNNNTTC	3 cut(s)	318, 1191, 1215
XspI	CTAG	5 cut(s)	440, 485, 866, 1014, 1184

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.