Basic Information

Type: gene

Biological Identity

Species

rosa_roxburghii

Chromosome

GWHEROQ00000007

Orthogroup ID

OG0012361

Physical Location & Seq

Genomic Coordinates Forward (+)

25397776 .. 25401570

Gene Structure 3795 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rroxscaffold_7G00185970.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1209 bp

ATGTTGCAGAGCACCACCATATTCTTCCCCACTTGTTCATATTCACCATCACAATCTCTCCGCCCAACCACTATCTCTCCCTGTCTCCTCTCTCTCCCATCATTTTCCTCTCACCACACACAATCCCAGTGGCATCCAAATCAACCAGCCCACAAGAAGAAGAGCCAATTTCAGCGACTCTGTGGCACTTATGAGGTCGGTGGAGGCTTCCCAGACGACGGATTGGGCGTCCGAGACAGGAACAGAACTACCCAAGAGAAATTGGACCCGGCCCAGATTGAAGCCCTTCTCAAAGGTGGAGAACAAGTCACTTCTGTCCTTGAAGAAATGATCACCCTCTTGGAGGATATGAAGATGGATGAGGCGTCTGAAGAGGTGGCAGTGGAAATAGCTGCACAAGGGGTCCTGGGGAAGAGAGTTGATGAGATGGAGGCCGGTTTCATGATGGCGCTGGACTACATGATCCAACTTGCTGACAGTGACCAAGACGAGAAGCGCAAGTCTCTATTGGAGGTGATTAAGGACACAGTTTTATCCTACCTTACCAAAAAATGCCCCCCACATGTTCAAGTGATTGGGCTACTCTGCAGAACTCCTCTGAAAGAAAGCAGACATGAATTACTACGCAGAGTGGCTGCTGGTGGTGGTGTATTTAAAAGTAAAAATGACGTCAAAGTTCATGTTCCAGCTGCAAATCTAAATGAAATTGCTAACCAAGCTGACGATTTACTGGAGACTATGGAAACTCGGCCTATAGTTCCGGATCGAAAGCTACTTGCAAGACTTGTTTTAATCAGAGAGGAAGCTCGGAATATGATGGGAGGTGGAATACTAGATGAGAGAAATGATTGTGGGTTTAAGACTCTTCCTGAATCAGAGGTGAACTTCTTAACCAAACTGGTAGCTTTGAAACCGGGGAAGACTGTGGAGGAGATGATAAAAAGTGTAATGGAAGGAAAAGACGAAGGTGCAGAAGACTCTGGCAGTGATGAGGAAGATACCACCAGTAGAAAGGGTTCGAGTGGAATTGCAGGAAGGGAAAGTGTTACAGGACGAAAAGCACTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTATCCAAGGTCTTAGGTGGTATATATGCTGGAAATGTCTCTGGCATCACAGCACAACATCTAGAGTGGGTTCATCAAAAGACACTTGAAGTTCTTCAGGAAATAGCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

402

Amino Acids

44.28

Weight (kDa)

5.46

Isoelectric Point (pI)

43.59

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48470
fragaria_vesca	FvH4_2g17800 FvH4_2g17800 FvH4_2g17800
malus_domestica	MD05G1159400.v1.1 MD10G1151900.v1.1
prunus_persica	Prupe.8G190300_v2.0.a1 Prupe.8G190300_v2.0.a1
pyrus_communis	pycom10g13090
rosa_chinensis	RchiOBHm_Chr6g0282821
rosa_laevigata	RLG00000012865
rosa_multiflora	Rmu_sc0006070.1_g000012
rosa_roxburghii	Rroxscaffold_7G00185970
rosa_rugosa	Rorug06G0149800
rosa_samantha	Rh6AG263100 Rh6BG266000 Rh6CG265200 Rh6DG257800
rosa_wichuraiana	Rw6G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	672
AccIII	TCCGGA	1 cut(s)	760
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	2 cut(s)	457, 771
AcuI	CTGAAG	2 cut(s)	390, 1175
AcyI	GRCGYC	3 cut(s)	228, 365, 669
AfiI	CCNNNNNNNGG	2 cut(s)	218, 343
AflIII	ACRYGT	1 cut(s)	562
AgsI	TTSAA	5 cut(s)	281, 323, 569, 910, 1184
AjnI	CCWGG	2 cut(s)	405, 1075
AluBI	AGCT	6 cut(s)	392, 689, 719, 772, 806, 905
AluI	AGCT	6 cut(s)	392, 689, 719, 772, 806, 905
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	6 cut(s)	89, 228, 507, 728, 1085, 1138
AlwI	GGATC	2 cut(s)	457, 771
Aor13HI	TCCGGA	1 cut(s)	760
AoxI	GGCC	3 cut(s)	270, 432, 749
ApeKI	GCWGC	3 cut(s)	392, 635, 689
Asp700I	GAANNNNTTC	3 cut(s)	285, 1015, 1188
AspLEI	GCGC	3 cut(s)	451, 498, 1074
AspS9I	GGNCC	3 cut(s)	265, 271, 403
AsuC2I	CCSGG	2 cut(s)	269, 915
AsuHPI	GGTGA	5 cut(s)	36, 104, 325, 526, 892
AvaII	GGWCC	2 cut(s)	265, 403
BbsI	GAAGAC	2 cut(s)	926, 981
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	3 cut(s)	379, 622, 676
BccI	CCATC	6 cut(s)	55, 106, 349, 421, 439, 811
BciT130I	CCWGG	2 cut(s)	407, 1077
BciVI	GTATCC	1 cut(s)	1108
BclI	TGATCA	1 cut(s)	330
BcnI	CCSGG	2 cut(s)	269, 915
BcoDI	GTCTC	6 cut(s)	89, 228, 507, 728, 1085, 1138
BfaI	CTAG	2 cut(s)	833, 1157
BfmI	CTRYAG	2 cut(s)	586, 753
BfoI	RGCGCY	1 cut(s)	452
BfuI	GTATCC	1 cut(s)	1108
BisI	GCNGC	3 cut(s)	393, 636, 690
BlsI	GCNGC	3 cut(s)	394, 637, 691
Bme1390I	CCNGG	4 cut(s)	269, 407, 915, 1077
Bme18I	GGWCC	2 cut(s)	265, 403
BmgT120I	GGNCC	3 cut(s)	265, 271, 403
BmiI	GGNNCC	2 cut(s)	267, 404
BmrFI	CCNGG	4 cut(s)	269, 407, 915, 1077
BmrI	ACTGGG	1 cut(s)	121
BmsI	GCATC	2 cut(s)	142, 1149
BmuI	ACTGGG	1 cut(s)	121
BpiI	GAAGAC	2 cut(s)	926, 981
BpmI	CTGGAG	1 cut(s)	752
BpuEI	CTTGAG	1 cut(s)	1109
BpuMI	CCSGG	2 cut(s)	269, 915
BsaHI	GRCGYC	3 cut(s)	228, 365, 669
BsaJI	CCNNGG	4 cut(s)	406, 914, 1075, 1101
BsaWI	WCCGGW	1 cut(s)	760
BsaXI	ACNNNNNCTCC	6 cut(s)	42, 61, 72, 91, 291, 321
Bsc4I	CCNNNNNNNGG	2 cut(s)	218, 343
Bse118I	RCCGGY	1 cut(s)	434
Bse1I	ACTGG	4 cut(s)	127, 735, 903, 1005
BseAI	TCCGGA	1 cut(s)	760
BseBI	CCWGG	2 cut(s)	407, 1077
BseDI	CCNNGG	4 cut(s)	406, 914, 1075, 1101
BseGI	GGATG	2 cut(s)	133, 364
BseLI	CCNNNNNNNGG	2 cut(s)	218, 343
BseNI	ACTGG	4 cut(s)	127, 735, 903, 1005
BseRI	GAGGAG	3 cut(s)	77, 585, 944
BseXI	GCAGC	3 cut(s)	379, 622, 676
BsgI	GTGCAG	2 cut(s)	378, 990
BshFI	GGCC	3 cut(s)	272, 434, 751
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	4 cut(s)	269, 435, 761, 914
BslI	CCNNNNNNNGG	2 cut(s)	218, 343
BsmAI	GTCTC	6 cut(s)	89, 228, 507, 728, 1085, 1138
BsnI	GGCC	3 cut(s)	272, 434, 751
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp13I	TCCGGA	1 cut(s)	760
Bsp143I	GATC	3 cut(s)	330, 462, 763
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	3 cut(s)	272, 434, 751
BspEI	TCCGGA	1 cut(s)	760
BspHI	TCATGA	1 cut(s)	441
BspLI	GGNNCC	2 cut(s)	267, 404
BspMAI	CTGCAG	1 cut(s)	590
BspPI	GGATC	2 cut(s)	457, 771
BspQI	GCTCTTC	1 cut(s)	155
BsrFI	RCCGGY	1 cut(s)	434
BsrI	ACTGG	4 cut(s)	127, 735, 903, 1005
BssAI	RCCGGY	1 cut(s)	434
BssECI	CCNNGG	4 cut(s)	406, 914, 1075, 1101
BssMI	GATC	3 cut(s)	330, 462, 763
BssNI	GRCGYC	3 cut(s)	228, 365, 669
BssT1I	CCWWGG	1 cut(s)	1101
Bst2UI	CCWGG	2 cut(s)	407, 1077
Bst4CI	ACNGT	4 cut(s)	479, 529, 925, 1096
Bst6I	CTCTTC	4 cut(s)	155, 366, 407, 870
BstACI	GRCGYC	3 cut(s)	228, 365, 669
BstDEI	CTNAG	1 cut(s)	1108
BstENI	CCTNNNNNAGG	1 cut(s)	341
BstF5I	GGATG	2 cut(s)	133, 364
BstH2I	RGCGCY	1 cut(s)	452
BstHHI	GCGC	3 cut(s)	451, 498, 1074
BstKTI	GATC	3 cut(s)	333, 465, 766
BstMAI	GTCTC	6 cut(s)	89, 228, 507, 728, 1085, 1138
BstMBI	GATC	3 cut(s)	330, 462, 763
BstMWI	GCNNNNNNNGC	1 cut(s)	716
BstNI	CCWGG	2 cut(s)	407, 1077
BstNSI	RCATGY	2 cut(s)	566, 1084
BstSCI	CCNGG	4 cut(s)	267, 405, 913, 1075
BstSFI	CTRYAG	2 cut(s)	586, 753
BstV1I	GCAGC	3 cut(s)	379, 622, 676
BstV2I	GAAGAC	2 cut(s)	926, 981
BsuI	GTATCC	1 cut(s)	1108
BsuRI	GGCC	3 cut(s)	272, 434, 751
BtsCI	GGATG	2 cut(s)	133, 364
BtsI	GCAGTG	2 cut(s)	387, 991
BtsIMutI	CAGTG	4 cut(s)	134, 387, 484, 991
CciI	TCATGA	1 cut(s)	441
CfoI	GCGC	3 cut(s)	451, 498, 1074
Cfr10I	RCCGGY	1 cut(s)	434
Cfr13I	GGNCC	3 cut(s)	265, 271, 403
CseI	GACGC	2 cut(s)	217, 354
CspCI	CAANNNNNGTGG	2 cut(s)	110, 145
CviAII	CATG	6 cut(s)	442, 460, 563, 614, 680, 1081
DdeI	CTNAG	1 cut(s)	1108
DpnI	GATC	3 cut(s)	332, 464, 765
DpnII	GATC	3 cut(s)	330, 462, 763
DraI	TTTAAA	1 cut(s)	655
Eam1104I	CTCTTC	4 cut(s)	155, 366, 407, 870
EarI	CTCTTC	4 cut(s)	155, 366, 407, 870
EciI	GGCGGA	1 cut(s)	50
Eco130I	CCWWGG	1 cut(s)	1101
Eco47I	GGWCC	2 cut(s)	265, 403
Eco57I	CTGAAG	2 cut(s)	390, 1175
EcoNI	CCTNNNNNAGG	1 cut(s)	341
EcoO109I	RGGNCCY	1 cut(s)	403
EcoRII	CCWGG	2 cut(s)	405, 1075
EcoT14I	CCWWGG	1 cut(s)	1101
ErhI	CCWWGG	1 cut(s)	1101
FaeI	CATG	6 cut(s)	445, 463, 566, 617, 683, 1084
FatI	CATG	6 cut(s)	441, 459, 562, 613, 679, 1080
FbaI	TGATCA	1 cut(s)	330
Fnu4HI	GCNGC	3 cut(s)	393, 636, 690
FokI	GGATG	2 cut(s)	120, 371
Fsp4HI	GCNGC	3 cut(s)	393, 636, 690
FspBI	CTAG	2 cut(s)	833, 1157
GlaI	GCGC	3 cut(s)	450, 497, 1073
GluI	GCNGC	3 cut(s)	393, 636, 690
GsuI	CTGGAG	1 cut(s)	752
HaeII	RGCGCY	1 cut(s)	452
HaeIII	GGCC	3 cut(s)	272, 434, 751
HapII	CCGG	4 cut(s)	269, 435, 761, 914
HgaI	GACGC	2 cut(s)	217, 354
HhaI	GCGC	3 cut(s)	451, 498, 1074
Hin1I	GRCGYC	3 cut(s)	228, 365, 669
Hin1II	CATG	6 cut(s)	445, 463, 566, 617, 683, 1084
Hin6I	GCGC	3 cut(s)	449, 496, 1072
HinP1I	GCGC	3 cut(s)	449, 496, 1072
HinfI	GANTC	4 cut(s)	177, 862, 872, 977
HpaII	CCGG	4 cut(s)	269, 435, 761, 914
HphI	GGTGA	5 cut(s)	36, 104, 325, 526, 892
Hpy166II	GTNNAC	1 cut(s)	883
Hpy188I	TCNGA	6 cut(s)	233, 370, 600, 797, 810, 877
Hpy188III	TCNNGA	6 cut(s)	442, 761, 869, 1088, 1157, 1193
Hpy8I	GTNNAC	1 cut(s)	883
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	4 cut(s)	296, 947, 959, 1029
HpyCH4III	ACNGT	4 cut(s)	479, 529, 925, 1096
HpyCH4IV	ACGT	1 cut(s)	669
HpyCH4V	TGCA	7 cut(s)	7, 395, 588, 692, 779, 971, 1031
HpyF10VI	GCNNNNNNNGC	1 cut(s)	716
HpyF3I	CTNAG	1 cut(s)	1108
HpySE526I	ACGT	1 cut(s)	669
Hsp92I	GRCGYC	3 cut(s)	228, 365, 669
Hsp92II	CATG	6 cut(s)	445, 463, 566, 617, 683, 1084
HspAI	GCGC	3 cut(s)	449, 496, 1072
Kpn2I	TCCGGA	1 cut(s)	760
Ksp22I	TGATCA	1 cut(s)	330
Kzo9I	GATC	3 cut(s)	330, 462, 763
LguI	GCTCTTC	1 cut(s)	155
Lsp1109I	GCAGC	3 cut(s)	379, 622, 676
LweI	GCATC	2 cut(s)	142, 1149
MaeI	CTAG	2 cut(s)	833, 1157
MaeII	ACGT	1 cut(s)	669
MaeIII	GTNAC	3 cut(s)	307, 479, 1045
MalI	GATC	3 cut(s)	332, 464, 765
MboI	GATC	3 cut(s)	330, 462, 763
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	5 cut(s)	167, 260, 617, 705, 1026
MlyI	GAGTC	3 cut(s)	171, 856, 971
MmeI	TCCRAC	1 cut(s)	490
MroI	TCCGGA	1 cut(s)	760
MroXI	GAANNNNTTC	3 cut(s)	285, 1015, 1188
MseI	TTAA	6 cut(s)	519, 654, 791, 858, 890, 1207
MspA1I	CMGCKG	1 cut(s)	689
MspI	CCGG	4 cut(s)	269, 435, 761, 914
MspR9I	CCNGG	4 cut(s)	269, 407, 915, 1077
MvaI	CCWGG	2 cut(s)	407, 1077
MwoI	GCNNNNNNNGC	1 cut(s)	716
NciI	CCSGG	2 cut(s)	269, 915
NdeII	GATC	3 cut(s)	330, 462, 763
NlaIII	CATG	6 cut(s)	445, 463, 566, 617, 683, 1084
NlaIV	GGNNCC	2 cut(s)	267, 404
NmeAIII	GCCGAG	1 cut(s)	727
NmuCI	GTSAC	2 cut(s)	307, 479
NspI	RCATGY	2 cut(s)	566, 1084
PagI	TCATGA	1 cut(s)	441
PciI	ACATGT	1 cut(s)	562
PciSI	GCTCTTC	1 cut(s)	155
PcsI	WCGNNNNNNNCGW	1 cut(s)	225
PdmI	GAANNNNTTC	3 cut(s)	285, 1015, 1188
PfeI	GAWTC	1 cut(s)	872
PkrI	GCNGC	3 cut(s)	394, 637, 691
PleI	GAGTC	3 cut(s)	171, 856, 971
PpsI	GAGTC	3 cut(s)	171, 856, 971
PpuMI	RGGWCCY	1 cut(s)	403
PscI	ACATGT	1 cut(s)	562
Psp5II	RGGWCCY	1 cut(s)	403
Psp6I	CCWGG	2 cut(s)	405, 1075
PspGI	CCWGG	2 cut(s)	405, 1075
PspN4I	GGNNCC	2 cut(s)	267, 404
PspPI	GGNCC	3 cut(s)	265, 271, 403
PspPPI	RGGWCCY	1 cut(s)	403
PsrI	GAACNNNNNNTAC	2 cut(s)	1000, 1032
PstI	CTGCAG	1 cut(s)	590
PvuII	CAGCTG	1 cut(s)	689
SapI	GCTCTTC	1 cut(s)	155
SaqAI	TTAA	6 cut(s)	519, 654, 791, 858, 890, 1207
SatI	GCNGC	3 cut(s)	393, 636, 690
Sau3AI	GATC	3 cut(s)	330, 462, 763
Sau96I	GGNCC	3 cut(s)	265, 271, 403
SchI	GAGTC	3 cut(s)	171, 856, 971
ScrFI	CCNGG	4 cut(s)	269, 407, 915, 1077
SduI	GDGCHC	1 cut(s)	14
SfaNI	GCATC	2 cut(s)	142, 1149
SfcI	CTRYAG	2 cut(s)	586, 753
SinI	GGWCC	2 cut(s)	265, 403
SmlI	CTYRAG	1 cut(s)	1088
SmoI	CTYRAG	1 cut(s)	1088
Sse9I	AATT	5 cut(s)	167, 260, 617, 705, 1026
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	2 cut(s)	833, 1157
StyD4I	CCNGG	4 cut(s)	267, 405, 913, 1075
StyI	CCWWGG	1 cut(s)	1101
TaaI	ACNGT	4 cut(s)	479, 529, 925, 1096
TaiI	ACGT	1 cut(s)	672
TaqI	TCGA	2 cut(s)	766, 1019
TasI	AATT	5 cut(s)	167, 260, 617, 705, 1026
TfiI	GAWTC	1 cut(s)	872
Tru1I	TTAA	6 cut(s)	519, 654, 791, 858, 890, 1207
Tru9I	TTAA	6 cut(s)	519, 654, 791, 858, 890, 1207
TscAI	CASTG	4 cut(s)	134, 387, 484, 991
TseFI	GTSAC	2 cut(s)	307, 479
TseI	GCWGC	3 cut(s)	392, 635, 689
Tsp45I	GTSAC	2 cut(s)	307, 479
TspDTI	ATGAA	7 cut(s)	27, 365, 430, 630, 668, 717, 1157
TspGWI	ACGGA	1 cut(s)	234
TspRI	CASTG	4 cut(s)	134, 387, 484, 991
VpaK11BI	GGWCC	2 cut(s)	265, 403
XagI	CCTNNNNNAGG	1 cut(s)	341
XbaI	TCTAGA	1 cut(s)	1156
XceI	RCATGY	2 cut(s)	566, 1084
XmnI	GAANNNNTTC	3 cut(s)	285, 1015, 1188
XspI	CTAG	2 cut(s)	833, 1157
ZraI	GACGTC	1 cut(s)	670

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.