Basic Information

Type: gene

Biological Identity

Species

rosa_laevigata

Chromosome

Chr3

Orthogroup ID

OG0012361

Physical Location & Seq

Genomic Coordinates Forward (+)

23279280 .. 23282437

Gene Structure 3158 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

RLM00000012865

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1161 bp

ATGTTGCAGAGCACCACCATATTCTTCCCCACTTGTTCATATTCACCATCACAATCTCTCCGCCCAACTCCCTGTCGCCTCTCTCTCCCATCATTTTCCTCTCACCACACACAATCCCAGTGGCATCCAAATCAACCAGCCCACAAGAAGAGCCGATTTCAGCGACTCTGTGGCACTTATGAGGTCGGTGGAGGCTTCCCAGACGACGGATTGGGCGTCCAATACAGGAACAGAACTACCCAAGAGAAATTGGAGCCGGCCCAGATTGAAGCCCTTCTCAAAGGTGGAGAACAAGTCACTTCTGTCCTCGAAGAAATGATCACCCTCTTGGAGGATATGAAGATGGATGAGGCGTCTGAAGAGGTGGCAGTGGAAATAGCTGCACAAGGGGTCCTGGGGAAGAGGGTTGATGAGATGGAGGCCGGTTTCATGATGGCGCTGGACTACATGATCCAACTTGCTGACAGTGACCAAGATGAGAAGCGCAAGTCTCTATTGGAGGTGATTAAGGACACAGTCTTGTCTTACCTTACTAAAAAATGTCCCCCACATGTTCAAGTGATTGGACTACTCTGTAGAACTCCTCTGAAAGAAAGTAGACATGAATTACTACGCAGAGTGGCTGCTGGTGGTGGTGTATTTAAAAGTAAAAATGACGTCAAAGTTCATGTTCCAGCTGCAAATCTAAATGAAATTGCTAACCAAGCTGATGATTTACTGGAGACAATGGAAACTCGGCCTATAGTTCCGGATCGAAAGCTACTTGCTAGACTTGTTTTAATCAGAGAGGAAGCTCGGAATATGATGGGAGGTGGAATACTAGATGAGAGAAATGATCGTGGGTTTAAGACTCTTCCTGAATCAGAGGTGAACTTCTTAACTAAACTGGTAGCTTTGAAACCGGGGAAGACTGTGGAGGAGATGATAAAAAGTGTAATGGAAGGAAAAGACGAAGGTGCAGAAGACTCTGGCAGTGATGAGGAAGATACCACCAGTAGAAAGGGTTCGAGTGGAATTGCAGGAAGGGAAAGTGTTACAGGACGAAAAGCGCTTCCTGTCTTAGGTGGTATATATGCTGGAAATGTCTCTGGCATCACAGCACAACATCTAGAGTGGGTTCATCAAAAGACACTTGAAGTTCTTCAGGAAATAGCATTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

387

Amino Acids

42.66

Weight (kDa)

5.54

Isoelectric Point (pI)

42.91

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0012361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48470
fragaria_vesca	FvH4_2g17800 FvH4_2g17800 FvH4_2g17800
malus_domestica	MD05G1159400.v1.1 MD10G1151900.v1.1
prunus_persica	Prupe.8G190300_v2.0.a1 Prupe.8G190300_v2.0.a1
pyrus_communis	pycom10g13090
rosa_chinensis	RchiOBHm_Chr6g0282821
rosa_laevigata	RLG00000012865
rosa_multiflora	Rmu_sc0006070.1_g000012
rosa_roxburghii	Rroxscaffold_7G00185970
rosa_rugosa	Rorug06G0149800
rosa_samantha	Rh6AG263100 Rh6BG266000 Rh6CG265200 Rh6DG257800
rosa_wichuraiana	Rw6G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	660
AccI	GTMKAC	1 cut(s)	598
AccIII	TCCGGA	1 cut(s)	748
AciI	CCGC	1 cut(s)	61
AclWI	GGATC	2 cut(s)	445, 759
AcuI	CTGAAG	2 cut(s)	378, 1127
AcyI	GRCGYC	3 cut(s)	216, 353, 657
AfeI	AGCGCT	1 cut(s)	1050
AfiI	CCNNNNNNNGG	3 cut(s)	206, 331, 1061
AflIII	ACRYGT	1 cut(s)	550
AgsI	TTSAA	4 cut(s)	269, 557, 898, 1136
AjnI	CCWGG	1 cut(s)	393
AluBI	AGCT	6 cut(s)	380, 677, 707, 760, 794, 893
AluI	AGCT	6 cut(s)	380, 677, 707, 760, 794, 893
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	3 cut(s)	495, 716, 1090
AlwI	GGATC	2 cut(s)	445, 759
Aor13HI	TCCGGA	1 cut(s)	748
Aor51HI	AGCGCT	1 cut(s)	1050
AoxI	GGCC	3 cut(s)	258, 420, 737
ApeKI	GCWGC	3 cut(s)	380, 623, 677
Asp700I	GAANNNNTTC	3 cut(s)	273, 1003, 1140
AspLEI	GCGC	3 cut(s)	439, 486, 1051
AspS9I	GGNCC	2 cut(s)	259, 391
AsuC2I	CCSGG	1 cut(s)	903
AsuHPI	GGTGA	5 cut(s)	36, 95, 313, 514, 880
AvaII	GGWCC	1 cut(s)	391
BbsI	GAAGAC	2 cut(s)	914, 969
Bbv12I	GWGCWC	1 cut(s)	14
BbvI	GCAGC	3 cut(s)	367, 610, 664
BccI	CCATC	6 cut(s)	55, 97, 337, 409, 427, 799
BciT130I	CCWGG	1 cut(s)	395
BclI	TGATCA	1 cut(s)	318
BcnI	CCSGG	1 cut(s)	903
BcoDI	GTCTC	3 cut(s)	495, 716, 1090
BfaI	CTAG	3 cut(s)	768, 821, 1109
BfmI	CTRYAG	2 cut(s)	574, 741
BfoI	RGCGCY	2 cut(s)	440, 1052
BisI	GCNGC	3 cut(s)	381, 624, 678
BlsI	GCNGC	3 cut(s)	382, 625, 679
Bme1390I	CCNGG	2 cut(s)	395, 903
Bme18I	GGWCC	1 cut(s)	391
BmgT120I	GGNCC	2 cut(s)	259, 391
BmiI	GGNNCC	2 cut(s)	255, 392
BmrFI	CCNGG	2 cut(s)	395, 903
BmrI	ACTGGG	1 cut(s)	112
BmsI	GCATC	2 cut(s)	133, 1101
BmuI	ACTGGG	1 cut(s)	112
BpiI	GAAGAC	2 cut(s)	914, 969
BpmI	CTGGAG	1 cut(s)	740
BpuMI	CCSGG	1 cut(s)	903
BsaHI	GRCGYC	3 cut(s)	216, 353, 657
BsaJI	CCNNGG	2 cut(s)	394, 902
BsaWI	WCCGGW	1 cut(s)	748
BsaXI	ACNNNNNCTCC	4 cut(s)	42, 72, 279, 309
Bsc4I	CCNNNNNNNGG	3 cut(s)	206, 331, 1061
Bse118I	RCCGGY	2 cut(s)	256, 422
Bse1I	ACTGG	4 cut(s)	118, 723, 891, 993
BseAI	TCCGGA	1 cut(s)	748
BseBI	CCWGG	1 cut(s)	395
BseDI	CCNNGG	2 cut(s)	394, 902
BseGI	GGATG	2 cut(s)	124, 352
BseLI	CCNNNNNNNGG	3 cut(s)	206, 331, 1061
BseNI	ACTGG	4 cut(s)	118, 723, 891, 993
BseRI	GAGGAG	2 cut(s)	573, 932
BseXI	GCAGC	3 cut(s)	367, 610, 664
BsgI	GTGCAG	2 cut(s)	366, 978
BshFI	GGCC	3 cut(s)	260, 422, 739
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	4 cut(s)	257, 423, 749, 902
BslFI	GGGAC	1 cut(s)	528
BslI	CCNNNNNNNGG	3 cut(s)	206, 331, 1061
BsmAI	GTCTC	3 cut(s)	495, 716, 1090
BsmFI	GGGAC	1 cut(s)	528
BsnI	GGCC	3 cut(s)	260, 422, 739
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp13I	TCCGGA	1 cut(s)	748
Bsp143I	GATC	4 cut(s)	318, 450, 751, 835
BspACI	CCGC	1 cut(s)	61
BspANI	GGCC	3 cut(s)	260, 422, 739
BspEI	TCCGGA	1 cut(s)	748
BspHI	TCATGA	1 cut(s)	429
BspLI	GGNNCC	2 cut(s)	255, 392
BspPI	GGATC	2 cut(s)	445, 759
BspQI	GCTCTTC	1 cut(s)	143
BsrFI	RCCGGY	2 cut(s)	256, 422
BsrI	ACTGG	4 cut(s)	118, 723, 891, 993
BssAI	RCCGGY	2 cut(s)	256, 422
BssECI	CCNNGG	2 cut(s)	394, 902
BssMI	GATC	4 cut(s)	318, 450, 751, 835
BssNI	GRCGYC	3 cut(s)	216, 353, 657
Bst2UI	CCWGG	1 cut(s)	395
Bst4CI	ACNGT	3 cut(s)	467, 517, 913
Bst6I	CTCTTC	4 cut(s)	143, 354, 395, 858
BstACI	GRCGYC	3 cut(s)	216, 353, 657
BstC8I	GCNNGC	1 cut(s)	258
BstDEI	CTNAG	1 cut(s)	1060
BstENI	CCTNNNNNAGG	2 cut(s)	329, 1059
BstF5I	GGATG	2 cut(s)	124, 352
BstH2I	RGCGCY	2 cut(s)	440, 1052
BstHHI	GCGC	3 cut(s)	439, 486, 1051
BstKTI	GATC	4 cut(s)	321, 453, 754, 838
BstMAI	GTCTC	3 cut(s)	495, 716, 1090
BstMBI	GATC	4 cut(s)	318, 450, 751, 835
BstMWI	GCNNNNNNNGC	1 cut(s)	704
BstNI	CCWGG	1 cut(s)	395
BstNSI	RCATGY	1 cut(s)	554
BstSCI	CCNGG	2 cut(s)	393, 901
BstSFI	CTRYAG	2 cut(s)	574, 741
BstV1I	GCAGC	3 cut(s)	367, 610, 664
BstV2I	GAAGAC	2 cut(s)	914, 969
BsuRI	GGCC	3 cut(s)	260, 422, 739
BtsCI	GGATG	2 cut(s)	124, 352
BtsI	GCAGTG	2 cut(s)	375, 979
BtsIMutI	CAGTG	4 cut(s)	125, 375, 472, 979
Cac8I	GCNNGC	1 cut(s)	258
CciI	TCATGA	1 cut(s)	429
CfoI	GCGC	3 cut(s)	439, 486, 1051
Cfr10I	RCCGGY	2 cut(s)	256, 422
Cfr13I	GGNCC	2 cut(s)	259, 391
CseI	GACGC	2 cut(s)	205, 342
CspCI	CAANNNNNGTGG	2 cut(s)	101, 136
CviAII	CATG	5 cut(s)	430, 448, 551, 602, 668
DdeI	CTNAG	1 cut(s)	1060
DpnI	GATC	4 cut(s)	320, 452, 753, 837
DpnII	GATC	4 cut(s)	318, 450, 751, 835
DraI	TTTAAA	1 cut(s)	643
Eam1104I	CTCTTC	4 cut(s)	143, 354, 395, 858
EarI	CTCTTC	4 cut(s)	143, 354, 395, 858
EciI	GGCGGA	1 cut(s)	50
Eco47I	GGWCC	1 cut(s)	391
Eco47III	AGCGCT	1 cut(s)	1050
Eco57I	CTGAAG	2 cut(s)	378, 1127
EcoNI	CCTNNNNNAGG	2 cut(s)	329, 1059
EcoO109I	RGGNCCY	1 cut(s)	391
EcoRII	CCWGG	1 cut(s)	393
FaeI	CATG	5 cut(s)	433, 451, 554, 605, 671
FaqI	GGGAC	1 cut(s)	528
FatI	CATG	5 cut(s)	429, 447, 550, 601, 667
FbaI	TGATCA	1 cut(s)	318
FblI	GTMKAC	1 cut(s)	598
Fnu4HI	GCNGC	3 cut(s)	381, 624, 678
FokI	GGATG	2 cut(s)	111, 359
Fsp4HI	GCNGC	3 cut(s)	381, 624, 678
FspBI	CTAG	3 cut(s)	768, 821, 1109
GlaI	GCGC	3 cut(s)	438, 485, 1050
GluI	GCNGC	3 cut(s)	381, 624, 678
GsuI	CTGGAG	1 cut(s)	740
HaeII	RGCGCY	2 cut(s)	440, 1052
HaeIII	GGCC	3 cut(s)	260, 422, 739
HapII	CCGG	4 cut(s)	257, 423, 749, 902
HgaI	GACGC	2 cut(s)	205, 342
HhaI	GCGC	3 cut(s)	439, 486, 1051
Hin1I	GRCGYC	3 cut(s)	216, 353, 657
Hin1II	CATG	5 cut(s)	433, 451, 554, 605, 671
Hin6I	GCGC	3 cut(s)	437, 484, 1049
HinP1I	GCGC	3 cut(s)	437, 484, 1049
HinfI	GANTC	4 cut(s)	165, 850, 860, 965
HpaII	CCGG	4 cut(s)	257, 423, 749, 902
HphI	GGTGA	5 cut(s)	36, 95, 313, 514, 880
Hpy166II	GTNNAC	2 cut(s)	599, 871
Hpy188I	TCNGA	5 cut(s)	358, 588, 785, 798, 865
Hpy188III	TCNNGA	5 cut(s)	430, 749, 857, 1109, 1145
Hpy8I	GTNNAC	2 cut(s)	599, 871
Hpy99I	CGWCG	1 cut(s)	209
HpyAV	CCTTC	4 cut(s)	284, 935, 947, 1017
HpyCH4III	ACNGT	3 cut(s)	467, 517, 913
HpyCH4IV	ACGT	1 cut(s)	657
HpyCH4V	TGCA	5 cut(s)	7, 383, 680, 959, 1019
HpyF10VI	GCNNNNNNNGC	1 cut(s)	704
HpyF3I	CTNAG	1 cut(s)	1060
HpySE526I	ACGT	1 cut(s)	657
Hsp92I	GRCGYC	3 cut(s)	216, 353, 657
Hsp92II	CATG	5 cut(s)	433, 451, 554, 605, 671
HspAI	GCGC	3 cut(s)	437, 484, 1049
Kpn2I	TCCGGA	1 cut(s)	748
KroI	GCCGGC	1 cut(s)	256
KroNI	GCCGGC	1 cut(s)	258
Ksp22I	TGATCA	1 cut(s)	318
Kzo9I	GATC	4 cut(s)	318, 450, 751, 835
LguI	GCTCTTC	1 cut(s)	143
LmnI	GCTCC	1 cut(s)	253
Lsp1109I	GCAGC	3 cut(s)	367, 610, 664
LweI	GCATC	2 cut(s)	133, 1101
MaeI	CTAG	3 cut(s)	768, 821, 1109
MaeII	ACGT	1 cut(s)	657
MaeIII	GTNAC	3 cut(s)	295, 467, 1033
MalI	GATC	4 cut(s)	320, 452, 753, 837
MboI	GATC	4 cut(s)	318, 450, 751, 835
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	4 cut(s)	248, 605, 693, 1014
MlyI	GAGTC	3 cut(s)	159, 844, 959
MmeI	TCCRAC	1 cut(s)	478
MroI	TCCGGA	1 cut(s)	748
MroNI	GCCGGC	1 cut(s)	256
MroXI	GAANNNNTTC	3 cut(s)	273, 1003, 1140
MseI	TTAA	6 cut(s)	507, 642, 779, 846, 878, 1159
MspA1I	CMGCKG	1 cut(s)	677
MspI	CCGG	4 cut(s)	257, 423, 749, 902
MspR9I	CCNGG	2 cut(s)	395, 903
MvaI	CCWGG	1 cut(s)	395
MwoI	GCNNNNNNNGC	1 cut(s)	704
NaeI	GCCGGC	1 cut(s)	258
NciI	CCSGG	1 cut(s)	903
NdeII	GATC	4 cut(s)	318, 450, 751, 835
NgoMIV	GCCGGC	1 cut(s)	256
NlaIII	CATG	5 cut(s)	433, 451, 554, 605, 671
NlaIV	GGNNCC	2 cut(s)	255, 392
NmeAIII	GCCGAG	1 cut(s)	715
NmuCI	GTSAC	2 cut(s)	295, 467
NspI	RCATGY	1 cut(s)	554
PagI	TCATGA	1 cut(s)	429
PciI	ACATGT	1 cut(s)	550
PciSI	GCTCTTC	1 cut(s)	143
PcsI	WCGNNNNNNNCGW	1 cut(s)	213
PdiI	GCCGGC	1 cut(s)	258
PdmI	GAANNNNTTC	3 cut(s)	273, 1003, 1140
PfeI	GAWTC	1 cut(s)	860
PflFI	GACNNNGTC	1 cut(s)	515
PkrI	GCNGC	3 cut(s)	382, 625, 679
PleI	GAGTC	3 cut(s)	159, 844, 959
PpsI	GAGTC	3 cut(s)	159, 844, 959
PpuMI	RGGWCCY	1 cut(s)	391
PscI	ACATGT	1 cut(s)	550
Psp5II	RGGWCCY	1 cut(s)	391
Psp6I	CCWGG	1 cut(s)	393
PspGI	CCWGG	1 cut(s)	393
PspN4I	GGNNCC	2 cut(s)	255, 392
PspPI	GGNCC	2 cut(s)	259, 391
PspPPI	RGGWCCY	1 cut(s)	391
PsrI	GAACNNNNNNTAC	2 cut(s)	988, 1020
PsyI	GACNNNGTC	1 cut(s)	515
PvuII	CAGCTG	1 cut(s)	677
SapI	GCTCTTC	1 cut(s)	143
SaqAI	TTAA	6 cut(s)	507, 642, 779, 846, 878, 1159
SatI	GCNGC	3 cut(s)	381, 624, 678
Sau3AI	GATC	4 cut(s)	318, 450, 751, 835
Sau96I	GGNCC	2 cut(s)	259, 391
SchI	GAGTC	3 cut(s)	159, 844, 959
ScrFI	CCNGG	2 cut(s)	395, 903
SduI	GDGCHC	1 cut(s)	14
SfaNI	GCATC	2 cut(s)	133, 1101
SfcI	CTRYAG	2 cut(s)	574, 741
SinI	GGWCC	1 cut(s)	391
Sse9I	AATT	4 cut(s)	248, 605, 693, 1014
SsiI	CCGC	1 cut(s)	61
SspMI	CTAG	3 cut(s)	768, 821, 1109
StyD4I	CCNGG	2 cut(s)	393, 901
TaaI	ACNGT	3 cut(s)	467, 517, 913
TaiI	ACGT	1 cut(s)	660
TaqI	TCGA	3 cut(s)	309, 754, 1007
TasI	AATT	4 cut(s)	248, 605, 693, 1014
TfiI	GAWTC	1 cut(s)	860
Tru1I	TTAA	6 cut(s)	507, 642, 779, 846, 878, 1159
Tru9I	TTAA	6 cut(s)	507, 642, 779, 846, 878, 1159
TscAI	CASTG	4 cut(s)	125, 375, 472, 979
TseFI	GTSAC	2 cut(s)	295, 467
TseI	GCWGC	3 cut(s)	380, 623, 677
Tsp45I	GTSAC	2 cut(s)	295, 467
TspDTI	ATGAA	7 cut(s)	27, 353, 418, 618, 656, 705, 1109
TspGWI	ACGGA	1 cut(s)	222
TspRI	CASTG	4 cut(s)	125, 375, 472, 979
Tth111I	GACNNNGTC	1 cut(s)	515
VpaK11BI	GGWCC	1 cut(s)	391
XagI	CCTNNNNNAGG	2 cut(s)	329, 1059
XbaI	TCTAGA	1 cut(s)	1108
XceI	RCATGY	1 cut(s)	554
XmiI	GTMKAC	1 cut(s)	598
XmnI	GAANNNNTTC	3 cut(s)	273, 1003, 1140
XspI	CTAG	3 cut(s)	768, 821, 1109
ZraI	GACGTC	1 cut(s)	658

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.