Basic Information

Type: gene

Biological Identity

Species

malus_domestica

Chromosome

Chr05

Orthogroup ID

OG0012361

Physical Location & Seq

Genomic Coordinates Reverse (-)

28795152 .. 28795806

Gene Structure 655 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

MD05G1159400.v1.1.491

Sequence Viewer

CDS Protein Promoter (2k)

Length: 381 bp

ATGAAGCGGCAGACGCTGCAGTGTTGTGGCACCTATGAGGTGGGCGCTGGATACCCAGATGAGCTATTGGGCGTGAAAGGCAAGAACGGAACTGCCCGAGAGCTAGGCAGCTCAAAATTGGAGAATGCCGAGTATAAAGCTCTTCTCAGAGGGGGTGAGCAGGTCATTTCCGTTCTTGAAGAGATGATCGTACTTGTACACCAAAAACTAGTTTCCCACTTCCATTTCACCTTTACATATACCCTAACTTTAATGTGGATTTGGACTATCCTCATGGAACTGAGCGATGAGCACGCACTGCCCTTTCAATTTTATCAAGTTATATGTATCACCACATTCTATCATTTCTCTACTTTTATGTCACTTGGGGAAAAAATATAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

127

Amino Acids

14.45

Weight (kDa)

5.92

Isoelectric Point (pI)

23.69

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48470
fragaria_vesca	FvH4_2g17800 FvH4_2g17800 FvH4_2g17800
malus_domestica	MD05G1159400.v1.1 MD10G1151900.v1.1
prunus_persica	Prupe.8G190300_v2.0.a1 Prupe.8G190300_v2.0.a1
pyrus_communis	pycom10g13090
rosa_chinensis	RchiOBHm_Chr6g0282821
rosa_laevigata	RLG00000012865
rosa_multiflora	Rmu_sc0006070.1_g000012
rosa_roxburghii	Rroxscaffold_7G00185970
rosa_rugosa	Rorug06G0149800
rosa_samantha	Rh6AG263100 Rh6BG266000 Rh6CG265200 Rh6DG257800
rosa_wichuraiana	Rw6G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	151
AccB1I	GGYRCC	1 cut(s)	29
AciI	CCGC	1 cut(s)	7
AfaI	GTAC	2 cut(s)	192, 198
AgsI	TTSAA	2 cut(s)	179, 308
AhlI	ACTAGT	1 cut(s)	208
AluBI	AGCT	4 cut(s)	64, 103, 111, 140
AluI	AGCT	4 cut(s)	64, 103, 111, 140
Alw21I	GWGCWC	1 cut(s)	294
AlwNI	CAGNNNCTG	1 cut(s)	16
Ama87I	CYCGRG	1 cut(s)	96
ApeKI	GCWGC	2 cut(s)	16, 108
AspLEI	GCGC	1 cut(s)	47
AsuHPI	GGTGA	3 cut(s)	167, 220, 322
AvaI	CYCGRG	1 cut(s)	96
BanI	GGYRCC	1 cut(s)	29
Bbv12I	GWGCWC	1 cut(s)	294
BbvI	GCAGC	2 cut(s)	3, 120
BciVI	GTATCC	1 cut(s)	44
BcuI	ACTAGT	1 cut(s)	208
BfaI	CTAG	2 cut(s)	104, 209
BfmI	CTRYAG	1 cut(s)	17
BfoI	RGCGCY	1 cut(s)	48
BfuAI	ACCTGC	1 cut(s)	151
BfuI	GTATCC	1 cut(s)	44
BisI	GCNGC	3 cut(s)	8, 17, 109
BlsI	GCNGC	3 cut(s)	9, 18, 110
BmeT110I	CYCGRG	1 cut(s)	96
BmiI	GGNNCC	1 cut(s)	31
BseMII	CTCAG	2 cut(s)	160, 272
BseXI	GCAGC	2 cut(s)	3, 120
BshNI	GGYRCC	1 cut(s)	29
BsiHKAI	GWGCWC	1 cut(s)	294
BsiHKCI	CYCGRG	1 cut(s)	96
BsmI	GAATGC	1 cut(s)	130
BsoBI	CYCGRG	1 cut(s)	96
Bsp1286I	GDGCHC	1 cut(s)	294
Bsp1407I	TGTACA	1 cut(s)	196
Bsp143I	GATC	1 cut(s)	186
BspACI	CCGC	1 cut(s)	7
BspCNI	CTCAG	2 cut(s)	159, 273
BspLI	GGNNCC	1 cut(s)	31
BspMAI	CTGCAG	1 cut(s)	21
BspMI	ACCTGC	1 cut(s)	151
BspQI	GCTCTTC	1 cut(s)	147
BspT107I	GGYRCC	1 cut(s)	29
BsrGI	TGTACA	1 cut(s)	196
BssMI	GATC	1 cut(s)	186
Bst6I	CTCTTC	2 cut(s)	147, 174
BstAPI	GCANNNNNTGC	2 cut(s)	16, 298
BstAUI	TGTACA	1 cut(s)	196
BstC8I	GCNNGC	1 cut(s)	294
BstDEI	CTNAG	2 cut(s)	146, 281
BstH2I	RGCGCY	1 cut(s)	48
BstHHI	GCGC	1 cut(s)	47
BstKTI	GATC	1 cut(s)	189
BstMBI	GATC	1 cut(s)	186
BstMWI	GCNNNNNNNGC	4 cut(s)	13, 16, 78, 298
BstSFI	CTRYAG	1 cut(s)	17
BstV1I	GCAGC	2 cut(s)	3, 120
BsuI	GTATCC	1 cut(s)	44
BtgZI	GCGATG	1 cut(s)	300
BtsI	GCAGTG	2 cut(s)	26, 296
BtsIMutI	CAGTG	2 cut(s)	26, 296
BveI	ACCTGC	1 cut(s)	151
Cac8I	GCNNGC	1 cut(s)	294
CaiI	CAGNNNCTG	1 cut(s)	16
CfoI	GCGC	1 cut(s)	47
CseI	GACGC	1 cut(s)	22
Csp6I	GTAC	2 cut(s)	191, 197
CviAII	CATG	1 cut(s)	274
CviJI	RGCY	4 cut(s)	64, 103, 111, 140
CviKI_1	RGCY	4 cut(s)	64, 103, 111, 140
CviQI	GTAC	2 cut(s)	191, 197
DdeI	CTNAG	2 cut(s)	146, 281
DpnI	GATC	1 cut(s)	188
DpnII	GATC	1 cut(s)	186
Eam1104I	CTCTTC	2 cut(s)	147, 174
EarI	CTCTTC	2 cut(s)	147, 174
Eco88I	CYCGRG	1 cut(s)	96
FaeI	CATG	1 cut(s)	277
FaiI	YATR	9 cut(s)	36, 135, 238, 240, 275, 323, 325, 359, 379
FatI	CATG	1 cut(s)	273
Fnu4HI	GCNGC	3 cut(s)	8, 17, 109
Fsp4HI	GCNGC	3 cut(s)	8, 17, 109
FspBI	CTAG	2 cut(s)	104, 209
GlaI	GCGC	1 cut(s)	46
GluI	GCNGC	3 cut(s)	8, 17, 109
HaeII	RGCGCY	1 cut(s)	48
HgaI	GACGC	1 cut(s)	22
HhaI	GCGC	1 cut(s)	47
Hin1II	CATG	1 cut(s)	277
Hin6I	GCGC	1 cut(s)	45
HinP1I	GCGC	1 cut(s)	45
HphI	GGTGA	3 cut(s)	167, 220, 322
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	1 cut(s)	149
Hpy188III	TCNNGA	1 cut(s)	176
Hpy8I	GTNNAC	1 cut(s)	199
HpyCH4V	TGCA	1 cut(s)	19
HpyF10VI	GCNNNNNNNGC	4 cut(s)	13, 16, 78, 298
HpyF3I	CTNAG	2 cut(s)	146, 281
Hsp92II	CATG	1 cut(s)	277
HspAI	GCGC	1 cut(s)	45
Kzo9I	GATC	1 cut(s)	186
LguI	GCTCTTC	1 cut(s)	147
LpnPI	CCDG	3 cut(s)	33, 69, 146
Lsp1109I	GCAGC	2 cut(s)	3, 120
MaeI	CTAG	2 cut(s)	104, 209
MaeIII	GTNAC	1 cut(s)	360
MalI	GATC	1 cut(s)	188
MboI	GATC	1 cut(s)	186
MboII	GAAGA	2 cut(s)	134, 191
MhlI	GDGCHC	1 cut(s)	294
MluCI	AATT	2 cut(s)	116, 308
MnlI	CCTC	3 cut(s)	31, 143, 281
MseI	TTAA	1 cut(s)	251
Mva1269I	GAATGC	1 cut(s)	130
MwoI	GCNNNNNNNGC	4 cut(s)	13, 16, 78, 298
NdeII	GATC	1 cut(s)	186
NlaIII	CATG	1 cut(s)	277
NlaIV	GGNNCC	1 cut(s)	31
NmeAIII	GCCGAG	1 cut(s)	154
NmuCI	GTSAC	1 cut(s)	360
PciSI	GCTCTTC	1 cut(s)	147
PctI	GAATGC	1 cut(s)	130
PkrI	GCNGC	3 cut(s)	9, 18, 110
PspN4I	GGNNCC	1 cut(s)	31
PstI	CTGCAG	1 cut(s)	21
PstNI	CAGNNNCTG	1 cut(s)	16
RsaI	GTAC	2 cut(s)	192, 198
RsaNI	GTAC	2 cut(s)	191, 197
SapI	GCTCTTC	1 cut(s)	147
SaqAI	TTAA	1 cut(s)	251
SatI	GCNGC	3 cut(s)	8, 17, 109
Sau3AI	GATC	1 cut(s)	186
SduI	GDGCHC	1 cut(s)	294
SetI	ASST	8 cut(s)	35, 42, 66, 105, 113, 142, 165, 233
SfcI	CTRYAG	1 cut(s)	17
SpeI	ACTAGT	1 cut(s)	208
Sse9I	AATT	2 cut(s)	116, 308
SsiI	CCGC	1 cut(s)	7
SspMI	CTAG	2 cut(s)	104, 209
TasI	AATT	2 cut(s)	116, 308
TatI	WGTACW	1 cut(s)	196
TauI	GCSGC	1 cut(s)	10
Tru1I	TTAA	1 cut(s)	251
Tru9I	TTAA	1 cut(s)	251
TscAI	CASTG	2 cut(s)	26, 303
TseFI	GTSAC	1 cut(s)	360
TseI	GCWGC	2 cut(s)	16, 108
Tsp45I	GTSAC	1 cut(s)	360
TspDTI	ATGAA	1 cut(s)	17
TspGWI	ACGGA	2 cut(s)	102, 160
TspRI	CASTG	2 cut(s)	26, 303
XspI	CTAG	2 cut(s)	104, 209

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.