Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr10

Orthogroup ID

OG0012361

Physical Location & Seq

Genomic Coordinates Reverse (-)

16569208 .. 16573441

Gene Structure 4234 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom10g13090.7

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1347 bp

ATGTTTTGTTTTTTAATTAAATTACGGCGACCTCGCTTAAATTTTATTATTTCTGGTTTTTTTTTGGTTAATCTTACAGCATCCTTATCACCTTCTTCCTGCAAAATACAAAAACCCAGCAAAAACCCCACAAGAAAAAAATTGTGGCAGAACACCAAAATGTTTCCGTGTTTTTCATACACAGCTGCACAGTCTGTAAACCCAGCAATTCTCTATCTACCCTCTTTTTCCTCCCACCACAGCAAATTTCCCCAACCTCAGCTTCAGCCAAAGCAACCCAATAAGAAGATGCAGCGGCAGACGCTGCGGCGGTGCGGCACCTATGAGGTGGGCGGCGGATACCCGGACGAAGGATTTGGCGCACAAGGGAAGAACAGAACTGCCCGAGAGCAAGGCAGCTCAAAATTGGAGCCTGCCCAATACGAAGCCCTTCTCAGAGGTGGTGAGCAGGTCACTTCTGTTCTTGAAGAGATGATCGTACTTTTGGAGGATATGAACATGGATGAGGCATCTGAAGAGGTGGCAGTGGAAATTGCTGCACAGGGGGTCCTAGGGAAGAGAGTTGATGAAATGGAGGCCAGTTTCATGATGGCTCTCGATTACATGATCCAACTGGCTGACAGTGACCAAGATGATAAGCGCAAGTCTCTATTGGAGGTGATCAAGGAGACAGTATTATCCTATCTTACGAAAAAATGCCCCCCACATGTTCAAGTGGTTGGCCTACTCTGTAGAACTCCCTTAAAAGAAAGCAGGCAGGAATTACTACGCAGAGTGGCTGCTGGTGGTGGTGTGTTTAAAAGTAAAAATGACATCAAAGTTCATGTTCCAGCTGCAAATCTTAATGATATTGCTAACCAGGCTGATGATATACTGGAGACAATGGAAACTCGGCCTATAGTTCCAGATCGAAAACTGCTTGCAAGACTTGTTTTGATCAGAGAGGAAGCTCGGAATATGATGGGAGGTGGAATACTAGATGAGAGAAATGATCGTGGATTTAACACTCTTCCAGAATCCGAGGTGAATTTCTTAACCAAACTGGTAGCTTTAAAGCCGGGGAAGACTGTCCAGGAGATGATAAAAAATGTAATGGAAGGTAAAAATGAAGGTGCTGACCAGTCTAGCAGTGATGAGGAAGATGACACTGGTGCGACGAGTGGAATTGGAGGAAGGGAAAGTGTTTCAGGACGAAAACCACTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTCTCCAAGGTCTTAGGTGGTATATATGGTGGAAATGTCTCTGGTATCACAGCACAACATCTAGAATGGGTTCATCAGAAGACACTTGAAGTTCTTCAGGAAATAGCATTTTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

449

Amino Acids

49.73

Weight (kDa)

8.08

Isoelectric Point (pI)

41.99

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48470
fragaria_vesca	FvH4_2g17800 FvH4_2g17800 FvH4_2g17800
malus_domestica	MD05G1159400.v1.1 MD10G1151900.v1.1
prunus_persica	Prupe.8G190300_v2.0.a1 Prupe.8G190300_v2.0.a1
pyrus_communis	pycom10g13090
rosa_chinensis	RchiOBHm_Chr6g0282821
rosa_laevigata	RLG00000012865
rosa_multiflora	Rmu_sc0006070.1_g000012
rosa_roxburghii	Rroxscaffold_7G00185970
rosa_rugosa	Rorug06G0149800
rosa_samantha	Rh6AG263100 Rh6BG266000 Rh6CG265200 Rh6DG257800
rosa_wichuraiana	Rw6G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	439
AccB1I	GGYRCC	1 cut(s)	317
AciI	CCGC	6 cut(s)	295, 307, 310, 315, 333, 336
AclWI	GGATC	1 cut(s)	601
AcsI	RAATTY	3 cut(s)	40, 245, 1027
AcuI	CTGAAG	3 cut(s)	248, 534, 1313
AfaI	GTAC	1 cut(s)	480
AfiI	CCNNNNNNNGG	1 cut(s)	350
AflIII	ACRYGT	1 cut(s)	706
AgsI	TTSAA	3 cut(s)	467, 713, 1322
AjnI	CCWGG	3 cut(s)	858, 1071, 1213
AjuI	GAANNNNNNNTTGG	2 cut(s)	246, 278
AluBI	AGCT	6 cut(s)	185, 262, 399, 833, 950, 1049
AluI	AGCT	6 cut(s)	185, 262, 399, 833, 950, 1049
Alw26I	GTCTC	6 cut(s)	651, 662, 872, 1223, 1240, 1276
AlwI	GGATC	1 cut(s)	601
AlwNI	CAGNNNCTG	1 cut(s)	304
Ama87I	CYCGRG	1 cut(s)	384
AoxI	GGCC	3 cut(s)	576, 721, 893
ApeKI	GCWGC	7 cut(s)	185, 292, 304, 396, 536, 779, 833
ApoI	RAATTY	3 cut(s)	40, 245, 1027
ArsI	GACNNNNNNTTYG	2 cut(s)	338, 370
Asp700I	GAANNNNTTC	3 cut(s)	429, 1302, 1326
AspA2I	CCTAGG	1 cut(s)	550
AspLEI	GCGC	3 cut(s)	362, 642, 1212
AspS9I	GGNCC	1 cut(s)	547
AsuC2I	CCSGG	2 cut(s)	344, 1059
AsuHPI	GGTGA	4 cut(s)	81, 455, 670, 1036
AvaI	CYCGRG	1 cut(s)	384
AvaII	GGWCC	1 cut(s)	547
AvrII	CCTAGG	1 cut(s)	550
BanI	GGYRCC	1 cut(s)	317
BbsI	GAAGAC	2 cut(s)	1070, 1319
BbvCI	CCTCAGC	1 cut(s)	258
BbvI	GCAGC	7 cut(s)	172, 291, 304, 408, 523, 766, 820
BccI	CCATC	2 cut(s)	583, 955
BceAI	ACGGC	1 cut(s)	41
BciT130I	CCWGG	3 cut(s)	860, 1073, 1215
BciVI	GTATCC	1 cut(s)	332
BclI	TGATCA	2 cut(s)	660, 936
BcnI	CCSGG	2 cut(s)	344, 1059
BcoDI	GTCTC	6 cut(s)	651, 662, 872, 1223, 1240, 1276
BfaI	CTAG	4 cut(s)	551, 977, 1125, 1295
BfmI	CTRYAG	2 cut(s)	730, 897
BfuAI	ACCTGC	1 cut(s)	439
BfuI	GTATCC	1 cut(s)	332
BlnI	CCTAGG	1 cut(s)	550
Bme1390I	CCNGG	5 cut(s)	344, 860, 1059, 1073, 1215
Bme18I	GGWCC	1 cut(s)	547
BmeT110I	CYCGRG	1 cut(s)	384
BmgT120I	GGNCC	1 cut(s)	547
BmiI	GGNNCC	3 cut(s)	319, 411, 548
BmrFI	CCNGG	5 cut(s)	344, 860, 1059, 1073, 1215
BmsI	GCATC	3 cut(s)	89, 279, 518
BpiI	GAAGAC	2 cut(s)	1070, 1319
BplI	GAGNNNNNCTC	2 cut(s)	1220, 1252
BpmI	CTGGAG	1 cut(s)	896
Bpu10I	CCTNAGC	1 cut(s)	258
BpuEI	CTTGAG	1 cut(s)	1247
BpuMI	CCSGG	2 cut(s)	344, 1059
BsaJI	CCNNGG	5 cut(s)	550, 1020, 1058, 1213, 1239
Bsc4I	CCNNNNNNNGG	1 cut(s)	350
Bse1I	ACTGG	6 cut(s)	579, 618, 879, 1047, 1120, 1153
BseBI	CCWGG	3 cut(s)	860, 1073, 1215
BseDI	CCNNGG	5 cut(s)	550, 1020, 1058, 1213, 1239
BseGI	GGATG	2 cut(s)	80, 508
BseLI	CCNNNNNNNGG	1 cut(s)	350
BseMII	CTCAG	2 cut(s)	272, 448
BseNI	ACTGG	6 cut(s)	579, 618, 879, 1047, 1120, 1153
BseXI	GCAGC	7 cut(s)	172, 291, 304, 408, 523, 766, 820
BseYI	CCCAGC	2 cut(s)	116, 202
BsgI	GTGCAG	2 cut(s)	171, 522
BshFI	GGCC	3 cut(s)	578, 723, 895
BshNI	GGYRCC	1 cut(s)	317
BsiHKCI	CYCGRG	1 cut(s)	384
BsiSI	CCGG	2 cut(s)	344, 1058
BslI	CCNNNNNNNGG	1 cut(s)	350
BsmAI	GTCTC	6 cut(s)	651, 662, 872, 1223, 1240, 1276
BsnI	GGCC	3 cut(s)	578, 723, 895
BsoBI	CYCGRG	1 cut(s)	384
Bsp143I	GATC	6 cut(s)	474, 606, 660, 907, 936, 991
BspACI	CCGC	6 cut(s)	295, 307, 310, 315, 333, 336
BspANI	GGCC	3 cut(s)	578, 723, 895
BspCNI	CTCAG	2 cut(s)	271, 447
BspHI	TCATGA	1 cut(s)	585
BspLI	GGNNCC	3 cut(s)	319, 411, 548
BspMI	ACCTGC	1 cut(s)	439
BspPI	GGATC	1 cut(s)	601
BspT107I	GGYRCC	1 cut(s)	317
BsrI	ACTGG	6 cut(s)	579, 618, 879, 1047, 1120, 1153
BssECI	CCNNGG	5 cut(s)	550, 1020, 1058, 1213, 1239
BssMI	GATC	6 cut(s)	474, 606, 660, 907, 936, 991
BssT1I	CCWWGG	2 cut(s)	550, 1239
Bst2UI	CCWGG	3 cut(s)	860, 1073, 1215
Bst4CI	ACNGT	5 cut(s)	192, 623, 673, 1069, 1234
Bst6I	CTCTTC	4 cut(s)	462, 510, 551, 1014
BstAPI	GCANNNNNTGC	1 cut(s)	304
BstC8I	GCNNGC	3 cut(s)	414, 755, 921
BstDEI	CTNAG	3 cut(s)	258, 434, 1246
BstF5I	GGATG	2 cut(s)	80, 508
BstHHI	GCGC	3 cut(s)	362, 642, 1212
BstKTI	GATC	6 cut(s)	477, 609, 663, 910, 939, 994
BstMAI	GTCTC	6 cut(s)	651, 662, 872, 1223, 1240, 1276
BstMBI	GATC	6 cut(s)	474, 606, 660, 907, 936, 991
BstMWI	GCNNNNNNNGC	3 cut(s)	301, 304, 860
BstNI	CCWGG	3 cut(s)	860, 1073, 1215
BstNSI	RCATGY	2 cut(s)	710, 1222
BstSCI	CCNGG	5 cut(s)	342, 858, 1057, 1071, 1213
BstSFI	CTRYAG	2 cut(s)	730, 897
BstV1I	GCAGC	7 cut(s)	172, 291, 304, 408, 523, 766, 820
BstV2I	GAAGAC	2 cut(s)	1070, 1319
BsuI	GTATCC	1 cut(s)	332
BsuRI	GGCC	3 cut(s)	578, 723, 895
BtsCI	GGATG	2 cut(s)	80, 508
BtsI	GCAGTG	2 cut(s)	531, 1135
BtsIMutI	CAGTG	4 cut(s)	531, 628, 1135, 1146
BveI	ACCTGC	1 cut(s)	439
Cac8I	GCNNGC	3 cut(s)	414, 755, 921
CaiI	CAGNNNCTG	1 cut(s)	304
CciI	TCATGA	1 cut(s)	585
CfoI	GCGC	3 cut(s)	362, 642, 1212
Cfr13I	GGNCC	1 cut(s)	547
CseI	GACGC	1 cut(s)	310
Csp6I	GTAC	1 cut(s)	479
CviAII	CATG	6 cut(s)	499, 586, 604, 707, 824, 1219
CviQI	GTAC	1 cut(s)	479
DdeI	CTNAG	3 cut(s)	258, 434, 1246
DpnI	GATC	6 cut(s)	476, 608, 662, 909, 938, 993
DpnII	GATC	6 cut(s)	474, 606, 660, 907, 936, 991
DraI	TTTAAA	2 cut(s)	799, 1053
Eam1104I	CTCTTC	4 cut(s)	462, 510, 551, 1014
EarI	CTCTTC	4 cut(s)	462, 510, 551, 1014
EciI	GGCGGA	1 cut(s)	351
Eco130I	CCWWGG	2 cut(s)	550, 1239
Eco47I	GGWCC	1 cut(s)	547
Eco57I	CTGAAG	3 cut(s)	248, 534, 1313
Eco88I	CYCGRG	1 cut(s)	384
EcoO109I	RGGNCCY	1 cut(s)	547
EcoRII	CCWGG	3 cut(s)	858, 1071, 1213
EcoT14I	CCWWGG	2 cut(s)	550, 1239
ErhI	CCWWGG	2 cut(s)	550, 1239
FaeI	CATG	6 cut(s)	502, 589, 607, 710, 827, 1222
FatI	CATG	6 cut(s)	498, 585, 603, 706, 823, 1218
FbaI	TGATCA	2 cut(s)	660, 936
FokI	GGATG	2 cut(s)	67, 515
FspBI	CTAG	4 cut(s)	551, 977, 1125, 1295
GlaI	GCGC	3 cut(s)	361, 641, 1211
GsaI	CCCAGC	2 cut(s)	120, 206
GsuI	CTGGAG	1 cut(s)	896
HaeIII	GGCC	3 cut(s)	578, 723, 895
HapII	CCGG	2 cut(s)	344, 1058
HgaI	GACGC	1 cut(s)	310
HhaI	GCGC	3 cut(s)	362, 642, 1212
Hin1II	CATG	6 cut(s)	502, 589, 607, 710, 827, 1222
Hin6I	GCGC	3 cut(s)	360, 640, 1210
HinP1I	GCGC	3 cut(s)	360, 640, 1210
HinfI	GANTC	1 cut(s)	1016
HpaII	CCGG	2 cut(s)	344, 1058
HphI	GGTGA	4 cut(s)	81, 455, 670, 1036
Hpy166II	GTNNAC	1 cut(s)	199
Hpy188I	TCNGA	6 cut(s)	437, 514, 941, 954, 1021, 1311
Hpy188III	TCNNGA	9 cut(s)	464, 586, 596, 905, 1013, 1188, 1226, 1295, 1331
Hpy8I	GTNNAC	1 cut(s)	199
Hpy99I	CGWCG	1 cut(s)	1159
HpyAV	CCTTC	6 cut(s)	102, 344, 440, 1091, 1103, 1167
HpyCH4III	ACNGT	5 cut(s)	192, 623, 673, 1069, 1234
HpyCH4V	TGCA	6 cut(s)	102, 188, 292, 539, 836, 923
HpyF10VI	GCNNNNNNNGC	3 cut(s)	301, 304, 860
HpyF3I	CTNAG	3 cut(s)	258, 434, 1246
Hsp92II	CATG	6 cut(s)	502, 589, 607, 710, 827, 1222
HspAI	GCGC	3 cut(s)	360, 640, 1210
Ksp22I	TGATCA	2 cut(s)	660, 936
Kzo9I	GATC	6 cut(s)	474, 606, 660, 907, 936, 991
LmnI	GCTCC	1 cut(s)	409
Lsp1109I	GCAGC	7 cut(s)	172, 291, 304, 408, 523, 766, 820
LweI	GCATC	3 cut(s)	89, 279, 518
MaeI	CTAG	4 cut(s)	551, 977, 1125, 1295
MaeIII	GTNAC	2 cut(s)	451, 623
MalI	GATC	6 cut(s)	476, 608, 662, 909, 938, 993
MboI	GATC	6 cut(s)	474, 606, 660, 907, 936, 991
MmeI	TCCRAC	1 cut(s)	634
MroXI	GAANNNNTTC	3 cut(s)	429, 1302, 1326
MslI	CAYNNNNRTG	1 cut(s)	158
MspA1I	CMGCKG	3 cut(s)	185, 295, 833
MspI	CCGG	2 cut(s)	344, 1058
MspR9I	CCNGG	5 cut(s)	344, 860, 1059, 1073, 1215
MvaI	CCWGG	3 cut(s)	860, 1073, 1215
MwoI	GCNNNNNNNGC	3 cut(s)	301, 304, 860
NciI	CCSGG	2 cut(s)	344, 1059
NdeII	GATC	6 cut(s)	474, 606, 660, 907, 936, 991
NlaIII	CATG	6 cut(s)	502, 589, 607, 710, 827, 1222
NlaIV	GGNNCC	3 cut(s)	319, 411, 548
NmeAIII	GCCGAG	1 cut(s)	871
NmuCI	GTSAC	2 cut(s)	451, 623
NspI	RCATGY	2 cut(s)	710, 1222
PacI	TTAATTAA	1 cut(s)	18
PagI	TCATGA	1 cut(s)	585
PciI	ACATGT	1 cut(s)	706
PdmI	GAANNNNTTC	3 cut(s)	429, 1302, 1326
PfeI	GAWTC	1 cut(s)	1016
PfoI	TCCNGGA	1 cut(s)	1071
PpuMI	RGGWCCY	1 cut(s)	547
PscI	ACATGT	1 cut(s)	706
Psp5II	RGGWCCY	1 cut(s)	547
Psp6I	CCWGG	3 cut(s)	858, 1071, 1213
PspFI	CCCAGC	2 cut(s)	116, 202
PspGI	CCWGG	3 cut(s)	858, 1071, 1213
PspN4I	GGNNCC	3 cut(s)	319, 411, 548
PspPI	GGNCC	1 cut(s)	547
PspPPI	RGGWCCY	1 cut(s)	547
PstNI	CAGNNNCTG	1 cut(s)	304
PvuII	CAGCTG	2 cut(s)	185, 833
RsaI	GTAC	1 cut(s)	480
RsaNI	GTAC	1 cut(s)	479
RseI	CAYNNNNRTG	1 cut(s)	158
Sau3AI	GATC	6 cut(s)	474, 606, 660, 907, 936, 991
Sau96I	GGNCC	1 cut(s)	547
ScrFI	CCNGG	5 cut(s)	344, 860, 1059, 1073, 1215
SfaNI	GCATC	3 cut(s)	89, 279, 518
SfcI	CTRYAG	2 cut(s)	730, 897
SinI	GGWCC	1 cut(s)	547
SmiMI	CAYNNNNRTG	1 cut(s)	158
SmlI	CTYRAG	1 cut(s)	1226
SmoI	CTYRAG	1 cut(s)	1226
SsiI	CCGC	6 cut(s)	295, 307, 310, 315, 333, 336
SspMI	CTAG	4 cut(s)	551, 977, 1125, 1295
StyD4I	CCNGG	5 cut(s)	342, 858, 1057, 1071, 1213
StyI	CCWWGG	2 cut(s)	550, 1239
TaaI	ACNGT	5 cut(s)	192, 623, 673, 1069, 1234
TaqI	TCGA	2 cut(s)	597, 910
TauI	GCSGC	4 cut(s)	298, 310, 318, 336
TfiI	GAWTC	1 cut(s)	1016
TscAI	CASTG	4 cut(s)	531, 628, 1135, 1153
TseFI	GTSAC	2 cut(s)	451, 623
TseI	GCWGC	7 cut(s)	185, 292, 304, 396, 536, 779, 833
Tsp45I	GTSAC	2 cut(s)	451, 623
TspDTI	ATGAA	7 cut(s)	165, 509, 574, 582, 812, 1122, 1295
TspGWI	ACGGA	1 cut(s)	156
TspRI	CASTG	4 cut(s)	531, 628, 1135, 1153
VpaK11BI	GGWCC	1 cut(s)	547
XapI	RAATTY	3 cut(s)	40, 245, 1027
XbaI	TCTAGA	1 cut(s)	1294
XceI	RCATGY	2 cut(s)	710, 1222
XcmI	CCANNNNNNNNNTGG	1 cut(s)	586
XmaJI	CCTAGG	1 cut(s)	550
XmnI	GAANNNNTTC	3 cut(s)	429, 1302, 1326
XspI	CTAG	4 cut(s)	551, 977, 1125, 1295

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.