Basic Information

Type: gene

Biological Identity

Species

fragaria_vesca

Chromosome

Fvb2

Orthogroup ID

OG0012361

Physical Location & Seq

Genomic Coordinates Reverse (-)

15270664 .. 15276171

Gene Structure 5508 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

FvH4_2g17800.t1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1182 bp

ATGTTGCAGAGCACCACCATCTTCTTCCCCACTCTTTCATTTTCACCGTCCCAATCTCTACGCTCTATCACTCTTCTCTCTCCCCCATCATTTCCCTCTCACCACACCCAATCCCAGCGCCATCCAAATCAACCAGCCCCGAAAAAGAGGCAATTTCAGCGGCTTTGTAGCTCTTATGAGGTCGGTGGAGGCTTCCCAGACGCCCAAGACCGGAATGCAACCACCCAAGAAAAAACCGACCCGGCCCAGATTGAAGCCCTTCTCAAAGGTGGAGAGCAAGTCACTTCTGTCCTCGAAGAAATGATCACCCTCTTGGAAGATATGAAGATGGATGAGGCGTCTGAAGAGGTGGCAGTGGAAATAGCTGCGCAAGGGGTCCTGGGGAAGAGAGTCGATGAGATGGAGGCCGGTTTCATGATGGCGCTGGATTACATGATCAAGCTTGCTGAGGATGACCAAGATGACAAGCGCAAATCACTATTGGAGGTGATTAAGGACACAGTCTTATCCTACCTTACCAAAAAATGCCCTCCACATGTTCAAGTGATTGGCCTACTCTGTAGAACTCCTTTGAAAGATAGCAGACAGGAATTACTACGCAGAGTGGCTGCTGGTGGTGGTGTATTTCAAAGTAAAAATGACGTCAAAGTTCATGTCCCTGCTGCAAATCTCAATGAAATTGCTAACCAAGCTGATGATTTACTGGAGACAATGGAAACTCGGCCTGTAGTTCCAGATCGAAAGCTACTTGCAAGACTTGTTTTGATCAGAGAGGAAGCTCGGAATATGATGGGAGGTGGAATACTAGATGAGAGAAATGATCGTGGGTTTAAGACTCTTCCTGAATCAGAGGTGAACTTCTTAACAAAACTGGTAGCTTTGAAACCAGGGAAGACTGTGGAGGAGATGATAAAAAATGTTATGGAAGGGAAAGACGAAGGTGCAGAAGACACCGGCAGTGATGAGGAAGATACAACCAGTATAAAGGGTCCGATTGGAATTGCAGGAAGGGAAAGTGTTACAGGACGAAAAGCGCTTCCTGTGCGCCCTGGCATGTTTCTTGAGACTGTGTCCAAGGTCTTAGGTGGTATTTATGGTGGAAATGTCTCTGGCATCACAGCACAACATCTAGAATGGGTTCATCAGAAGACACTTGAAGTTCTTCAGGAAATAGCGTTTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0005575 GO:0005622 GO:0005623 GO:0005737 GO:0006355 GO:0006996 GO:0008150 GO:0009295 GO:0009507 GO:0009532 GO:0009536 GO:0009570 GO:0009657 GO:0009658 GO:0009889 GO:0009987 GO:0010468 GO:0010556 GO:0016043 GO:0019219 GO:0019222 GO:0031323 GO:0031326 GO:0042644 GO:0042646 GO:0043226 GO:0043227 GO:0043228 GO:0043229 GO:0043231 GO:0043232 GO:0044422 GO:0044424 GO:0044434 GO:0044435 GO:0044444 GO:0044446 GO:0044464 GO:0050789 GO:0050794 GO:0051171 GO:0051252 GO:0060255 GO:0065007 GO:0071840 GO:0080090 GO:1903506 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

No domains found.

Protein Analysis

394

Amino Acids

43.32

Weight (kDa)

5.26

Isoelectric Point (pI)

46.48

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0012361)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48470
fragaria_vesca	FvH4_2g17800 FvH4_2g17800 FvH4_2g17800
malus_domestica	MD05G1159400.v1.1 MD10G1151900.v1.1
prunus_persica	Prupe.8G190300_v2.0.a1 Prupe.8G190300_v2.0.a1
pyrus_communis	pycom10g13090
rosa_chinensis	RchiOBHm_Chr6g0282821
rosa_laevigata	RLG00000012865
rosa_multiflora	Rmu_sc0006070.1_g000012
rosa_roxburghii	Rroxscaffold_7G00185970
rosa_rugosa	Rorug06G0149800
rosa_samantha	Rh6AG263100 Rh6BG266000 Rh6CG265200 Rh6DG257800
rosa_wichuraiana	Rw6G022710

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AatII	GACGTC	1 cut(s)	645
Acc16I	TGCGCA	1 cut(s)	369
AciI	CCGC	1 cut(s)	160
AcuI	CTGAAG	2 cut(s)	363, 1148
AcyI	GRCGYC	3 cut(s)	201, 338, 642
AfeI	AGCGCT	1 cut(s)	1035
AfiI	CCNNNNNNNGG	1 cut(s)	210
AflIII	ACRYGT	1 cut(s)	535
AgsI	TTSAA	6 cut(s)	254, 542, 574, 629, 883, 1157
AjnI	CCWGG	3 cut(s)	378, 886, 1048
AluBI	AGCT	7 cut(s)	171, 365, 442, 692, 745, 779, 878
AluI	AGCT	7 cut(s)	171, 365, 442, 692, 745, 779, 878
Alw21I	GWGCWC	1 cut(s)	14
Alw26I	GTCTC	3 cut(s)	701, 1058, 1111
Aor51HI	AGCGCT	1 cut(s)	1035
AoxI	GGCC	4 cut(s)	243, 405, 550, 722
ApeKI	GCWGC	3 cut(s)	365, 608, 662
ArsI	GACNNNNNNTTYG	2 cut(s)	639, 671
Asp700I	GAANNNNTTC	3 cut(s)	258, 1137, 1161
AspLEI	GCGC	6 cut(s)	120, 370, 424, 471, 1036, 1047
AspS9I	GGNCC	3 cut(s)	244, 376, 989
AsuC2I	CCSGG	1 cut(s)	242
AsuHPI	GGTGA	5 cut(s)	36, 92, 298, 499, 865
AvaII	GGWCC	2 cut(s)	376, 989
BbsI	GAAGAC	3 cut(s)	899, 954, 1154
Bbv12I	GWGCWC	1 cut(s)	14
BbvCI	CCTCAGC	1 cut(s)	447
BbvI	GCAGC	3 cut(s)	352, 595, 649
BccI	CCATC	7 cut(s)	26, 94, 129, 322, 394, 412, 784
BciT130I	CCWGG	3 cut(s)	380, 888, 1050
BclI	TGATCA	3 cut(s)	303, 435, 765
BcnI	CCSGG	1 cut(s)	242
BcoDI	GTCTC	3 cut(s)	701, 1058, 1111
BfaI	CTAG	2 cut(s)	806, 1130
BfmI	CTRYAG	2 cut(s)	559, 726
BfoI	RGCGCY	3 cut(s)	121, 425, 1037
BisI	GCNGC	4 cut(s)	161, 366, 609, 663
BlsI	GCNGC	4 cut(s)	162, 367, 610, 664
Bme1390I	CCNGG	4 cut(s)	242, 380, 888, 1050
Bme18I	GGWCC	2 cut(s)	376, 989
BmgT120I	GGNCC	3 cut(s)	244, 376, 989
BmiI	GGNNCC	2 cut(s)	377, 990
BmrFI	CCNGG	4 cut(s)	242, 380, 888, 1050
BmsI	GCATC	1 cut(s)	1122
BpiI	GAAGAC	3 cut(s)	899, 954, 1154
BpmI	CTGGAG	1 cut(s)	725
Bpu10I	CCTNAGC	1 cut(s)	447
BpuEI	CTTGAG	1 cut(s)	1082
BpuMI	CCSGG	1 cut(s)	242
BsaHI	GRCGYC	3 cut(s)	201, 338, 642
BsaJI	CCNNGG	4 cut(s)	379, 887, 1048, 1074
BsaWI	WCCGGW	1 cut(s)	210
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	1 cut(s)	210
Bse118I	RCCGGY	2 cut(s)	407, 953
Bse1I	ACTGG	3 cut(s)	708, 876, 978
BseBI	CCWGG	3 cut(s)	380, 888, 1050
BseDI	CCNNGG	4 cut(s)	379, 887, 1048, 1074
BseGI	GGATG	3 cut(s)	121, 337, 457
BseLI	CCNNNNNNNGG	1 cut(s)	210
BseMII	CTCAG	1 cut(s)	438
BseNI	ACTGG	3 cut(s)	708, 876, 978
BseRI	GAGGAG	1 cut(s)	917
BseXI	GCAGC	3 cut(s)	352, 595, 649
BseYI	CCCAGC	1 cut(s)	114
BsgI	GTGCAG	1 cut(s)	963
BshFI	GGCC	4 cut(s)	245, 407, 552, 724
BsiHKAI	GWGCWC	1 cut(s)	14
BsiSI	CCGG	4 cut(s)	211, 242, 408, 954
BslFI	GGGAC	2 cut(s)	34, 641
BslI	CCNNNNNNNGG	1 cut(s)	210
BsmAI	GTCTC	3 cut(s)	701, 1058, 1111
BsmFI	GGGAC	2 cut(s)	34, 641
BsmI	GAATGC	1 cut(s)	220
BsnI	GGCC	4 cut(s)	245, 407, 552, 724
Bsp1286I	GDGCHC	1 cut(s)	14
Bsp143I	GATC	5 cut(s)	303, 435, 736, 765, 820
BspACI	CCGC	1 cut(s)	160
BspANI	GGCC	4 cut(s)	245, 407, 552, 724
BspCNI	CTCAG	1 cut(s)	439
BspHI	TCATGA	1 cut(s)	414
BspLI	GGNNCC	2 cut(s)	377, 990
BsrFI	RCCGGY	2 cut(s)	407, 953
BsrI	ACTGG	3 cut(s)	708, 876, 978
BssAI	RCCGGY	2 cut(s)	407, 953
BssECI	CCNNGG	4 cut(s)	379, 887, 1048, 1074
BssMI	GATC	5 cut(s)	303, 435, 736, 765, 820
BssNI	GRCGYC	3 cut(s)	201, 338, 642
BssT1I	CCWWGG	1 cut(s)	1074
Bst2UI	CCWGG	3 cut(s)	380, 888, 1050
Bst4CI	ACNGT	4 cut(s)	48, 502, 898, 1069
Bst6I	CTCTTC	4 cut(s)	78, 339, 380, 843
BstACI	GRCGYC	3 cut(s)	201, 338, 642
BstC8I	GCNNGC	1 cut(s)	444
BstDEI	CTNAG	2 cut(s)	447, 1081
BstF5I	GGATG	3 cut(s)	121, 337, 457
BstH2I	RGCGCY	3 cut(s)	121, 425, 1037
BstHHI	GCGC	6 cut(s)	120, 370, 424, 471, 1036, 1047
BstKTI	GATC	5 cut(s)	306, 438, 739, 768, 823
BstMAI	GTCTC	3 cut(s)	701, 1058, 1111
BstMBI	GATC	5 cut(s)	303, 435, 736, 765, 820
BstMWI	GCNNNNNNNGC	3 cut(s)	157, 689, 1042
BstNI	CCWGG	3 cut(s)	380, 888, 1050
BstNSI	RCATGY	2 cut(s)	539, 1057
BstSCI	CCNGG	4 cut(s)	240, 378, 886, 1048
BstSFI	CTRYAG	2 cut(s)	559, 726
BstV1I	GCAGC	3 cut(s)	352, 595, 649
BstV2I	GAAGAC	3 cut(s)	899, 954, 1154
BsuRI	GGCC	4 cut(s)	245, 407, 552, 724
BtsCI	GGATG	3 cut(s)	121, 337, 457
BtsI	GCAGTG	2 cut(s)	360, 964
BtsIMutI	CAGTG	2 cut(s)	360, 964
Cac8I	GCNNGC	1 cut(s)	444
CciI	TCATGA	1 cut(s)	414
CfoI	GCGC	6 cut(s)	120, 370, 424, 471, 1036, 1047
Cfr10I	RCCGGY	2 cut(s)	407, 953
Cfr13I	GGNCC	3 cut(s)	244, 376, 989
CseI	GACGC	2 cut(s)	209, 327
CviAII	CATG	5 cut(s)	415, 433, 536, 653, 1054
DdeI	CTNAG	2 cut(s)	447, 1081
DpnI	GATC	5 cut(s)	305, 437, 738, 767, 822
DpnII	GATC	5 cut(s)	303, 435, 736, 765, 820
Eam1104I	CTCTTC	4 cut(s)	78, 339, 380, 843
EarI	CTCTTC	4 cut(s)	78, 339, 380, 843
Eco130I	CCWWGG	1 cut(s)	1074
Eco47I	GGWCC	2 cut(s)	376, 989
Eco47III	AGCGCT	1 cut(s)	1035
Eco57I	CTGAAG	2 cut(s)	363, 1148
EcoO109I	RGGNCCY	1 cut(s)	376
EcoRII	CCWGG	3 cut(s)	378, 886, 1048
EcoT14I	CCWWGG	1 cut(s)	1074
ErhI	CCWWGG	1 cut(s)	1074
FaeI	CATG	5 cut(s)	418, 436, 539, 656, 1057
FaqI	GGGAC	2 cut(s)	34, 641
FatI	CATG	5 cut(s)	414, 432, 535, 652, 1053
FbaI	TGATCA	3 cut(s)	303, 435, 765
Fnu4HI	GCNGC	4 cut(s)	161, 366, 609, 663
FokI	GGATG	3 cut(s)	108, 344, 464
Fsp4HI	GCNGC	4 cut(s)	161, 366, 609, 663
FspBI	CTAG	2 cut(s)	806, 1130
FspI	TGCGCA	1 cut(s)	369
GlaI	GCGC	6 cut(s)	119, 369, 423, 470, 1035, 1046
GluI	GCNGC	4 cut(s)	161, 366, 609, 663
GsaI	CCCAGC	1 cut(s)	118
GsuI	CTGGAG	1 cut(s)	725
HaeII	RGCGCY	3 cut(s)	121, 425, 1037
HaeIII	GGCC	4 cut(s)	245, 407, 552, 724
HapII	CCGG	4 cut(s)	211, 242, 408, 954
HgaI	GACGC	2 cut(s)	209, 327
HhaI	GCGC	6 cut(s)	120, 370, 424, 471, 1036, 1047
Hin1I	GRCGYC	3 cut(s)	201, 338, 642
Hin1II	CATG	5 cut(s)	418, 436, 539, 656, 1057
Hin6I	GCGC	6 cut(s)	118, 368, 422, 469, 1034, 1045
HinP1I	GCGC	6 cut(s)	118, 368, 422, 469, 1034, 1045
HindIII	AAGCTT	1 cut(s)	440
HinfI	GANTC	3 cut(s)	390, 835, 845
HpaII	CCGG	4 cut(s)	211, 242, 408, 954
HphI	GGTGA	5 cut(s)	36, 92, 298, 499, 865
Hpy166II	GTNNAC	1 cut(s)	856
Hpy188I	TCNGA	6 cut(s)	343, 770, 783, 850, 993, 1146
Hpy188III	TCNNGA	6 cut(s)	415, 734, 842, 1061, 1130, 1166
Hpy8I	GTNNAC	1 cut(s)	856
HpyAV	CCTTC	4 cut(s)	269, 920, 932, 1002
HpyCH4III	ACNGT	4 cut(s)	48, 502, 898, 1069
HpyCH4IV	ACGT	1 cut(s)	642
HpyCH4V	TGCA	6 cut(s)	7, 218, 665, 752, 944, 1004
HpyF10VI	GCNNNNNNNGC	3 cut(s)	157, 689, 1042
HpyF3I	CTNAG	2 cut(s)	447, 1081
HpySE526I	ACGT	1 cut(s)	642
Hsp92I	GRCGYC	3 cut(s)	201, 338, 642
Hsp92II	CATG	5 cut(s)	418, 436, 539, 656, 1057
HspAI	GCGC	6 cut(s)	118, 368, 422, 469, 1034, 1045
Ksp22I	TGATCA	3 cut(s)	303, 435, 765
Kzo9I	GATC	5 cut(s)	303, 435, 736, 765, 820
Lsp1109I	GCAGC	3 cut(s)	352, 595, 649
LweI	GCATC	1 cut(s)	1122
MaeI	CTAG	2 cut(s)	806, 1130
MaeII	ACGT	1 cut(s)	642
MaeIII	GTNAC	2 cut(s)	280, 1018
MalI	GATC	5 cut(s)	305, 437, 738, 767, 822
MboI	GATC	5 cut(s)	303, 435, 736, 765, 820
MhlI	GDGCHC	1 cut(s)	14
MluCI	AATT	4 cut(s)	152, 590, 678, 999
MlyI	GAGTC	2 cut(s)	399, 829
MroXI	GAANNNNTTC	3 cut(s)	258, 1137, 1161
MseI	TTAA	4 cut(s)	492, 831, 863, 1180
MspA1I	CMGCKG	1 cut(s)	160
MspI	CCGG	4 cut(s)	211, 242, 408, 954
MspR9I	CCNGG	4 cut(s)	242, 380, 888, 1050
Mva1269I	GAATGC	1 cut(s)	220
MvaI	CCWGG	3 cut(s)	380, 888, 1050
MwoI	GCNNNNNNNGC	3 cut(s)	157, 689, 1042
NciI	CCSGG	1 cut(s)	242
NdeII	GATC	5 cut(s)	303, 435, 736, 765, 820
NlaIII	CATG	5 cut(s)	418, 436, 539, 656, 1057
NlaIV	GGNNCC	2 cut(s)	377, 990
NmeAIII	GCCGAG	1 cut(s)	700
NmuCI	GTSAC	1 cut(s)	280
NsbI	TGCGCA	1 cut(s)	369
NspI	RCATGY	2 cut(s)	539, 1057
PagI	TCATGA	1 cut(s)	414
PciI	ACATGT	1 cut(s)	535
PctI	GAATGC	1 cut(s)	220
PdmI	GAANNNNTTC	3 cut(s)	258, 1137, 1161
PfeI	GAWTC	1 cut(s)	845
PflFI	GACNNNGTC	2 cut(s)	500, 1069
PkrI	GCNGC	4 cut(s)	162, 367, 610, 664
PleI	GAGTC	2 cut(s)	398, 829
PpsI	GAGTC	2 cut(s)	398, 829
PpuMI	RGGWCCY	1 cut(s)	376
PscI	ACATGT	1 cut(s)	535
Psp5II	RGGWCCY	1 cut(s)	376
Psp6I	CCWGG	3 cut(s)	378, 886, 1048
PspFI	CCCAGC	1 cut(s)	114
PspGI	CCWGG	3 cut(s)	378, 886, 1048
PspN4I	GGNNCC	2 cut(s)	377, 990
PspPI	GGNCC	3 cut(s)	244, 376, 989
PspPPI	RGGWCCY	1 cut(s)	376
PsyI	GACNNNGTC	2 cut(s)	500, 1069
SaqAI	TTAA	4 cut(s)	492, 831, 863, 1180
SatI	GCNGC	4 cut(s)	161, 366, 609, 663
Sau3AI	GATC	5 cut(s)	303, 435, 736, 765, 820
Sau96I	GGNCC	3 cut(s)	244, 376, 989
SchI	GAGTC	2 cut(s)	399, 829
ScrFI	CCNGG	4 cut(s)	242, 380, 888, 1050
SduI	GDGCHC	1 cut(s)	14
SfaNI	GCATC	1 cut(s)	1122
SfcI	CTRYAG	2 cut(s)	559, 726
SinI	GGWCC	2 cut(s)	376, 989
SmlI	CTYRAG	1 cut(s)	1061
SmoI	CTYRAG	1 cut(s)	1061
Sse9I	AATT	4 cut(s)	152, 590, 678, 999
SsiI	CCGC	1 cut(s)	160
SspMI	CTAG	2 cut(s)	806, 1130
StyD4I	CCNGG	4 cut(s)	240, 378, 886, 1048
StyI	CCWWGG	1 cut(s)	1074
TaaI	ACNGT	4 cut(s)	48, 502, 898, 1069
TaiI	ACGT	1 cut(s)	645
TaqI	TCGA	3 cut(s)	294, 393, 739
TasI	AATT	4 cut(s)	152, 590, 678, 999
TauI	GCSGC	1 cut(s)	163
TfiI	GAWTC	1 cut(s)	845
Tru1I	TTAA	4 cut(s)	492, 831, 863, 1180
Tru9I	TTAA	4 cut(s)	492, 831, 863, 1180
TscAI	CASTG	2 cut(s)	360, 964
TseFI	GTSAC	1 cut(s)	280
TseI	GCWGC	3 cut(s)	365, 608, 662
Tsp45I	GTSAC	1 cut(s)	280
TspDTI	ATGAA	6 cut(s)	27, 338, 403, 641, 690, 1130
TspRI	CASTG	2 cut(s)	360, 964
Tth111I	GACNNNGTC	2 cut(s)	500, 1069
VpaK11BI	GGWCC	2 cut(s)	376, 989
XbaI	TCTAGA	1 cut(s)	1129
XceI	RCATGY	2 cut(s)	539, 1057
XmnI	GAANNNNTTC	3 cut(s)	258, 1137, 1161
XspI	CTAG	2 cut(s)	806, 1130
ZraI	GACGTC	1 cut(s)	643

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.