AT5G48830

Protein of unknown function (DUF3685)

Basic Information

Type: gene
Biological Identity
arabidopsis_thaliana
5
Physical Location & Seq
Reverse (-)
19799953 .. 19803098
3146 bp
Loading structure...
UTR
Exon/CDS
Intron
AT5G48830.2

Sequence Viewer

Length: 1536 bp
ATGGTTGGACATGTTGTTGTGTCTCCTTCATCGAGCGTTCAGCTCCGGATGCACAATGTTCACTCTAGTCAAACAAGCTGCTTCTCCACAAATCCTCGTGTAAAATTTTCCCAGAGGAGTTGCAAGATCGTATCAAGGAAAGCTTACAAATTTAATGTTTCTACTTCCTTGAATCTTGGATCGTCTTGTTCTCAGGGAGATTCTACTTGTAAGTGTACTTGTTTTGCTTCTCTGGCGGATTTTGATGGTGTTGCTGGTTCTGGTTGGGTTCCTATTGGTGACCAAGTTCTCTTGACGGCTAGTATATTTCTTACGTATATGGCTGGAGTGATTCCTGTTCAAAAAACCTCTACCTACTCTTCGGGAAAGAGTACGATCGTGGAGGAGATACCAGAAGTTGGAACTTCAAAATCTTCTGGTAGGGAGACAGATTTTGAGGGTGATTTGAAGTCTGTATGGGATGTGGTGAAAGTAAAGCTTTTAGATTCTTTAGACGCCATCAAGCGTGAGAATACACTTGGAAGCAAAGTTCTCAAACCCAAACCTCCCCAAGGGAAGCCCCCATTGAGTTTGTATGCGATATCTGAAGGGCCTCAGTTGTACTTGCTCTGGTCATGTTTTCAGAAACTTGAAGAAGAGACAAATAAGATCTCTGGCACAATCAATTCAGATGAGTGGATGGGTAGTTTTACTCAAATTGTTCGAGAAGCATATCAAGCAGCATGCACGGCTTGGCTAAAAGAGGAACTGTATGTGGAAAACACTGATTCTGACAATGCGATAACTCCTTTGCTGATCAGAATGCTAAATGAAAAGGATGCTATATTTGACAAAATAAGAAAATCAGGCAAGGAGGATCTGTTTGCAGAATTTTTATATTTCCATAAATTTGGATCTCCCGGGAAAGCTTTCTGCTATGACTTGAGCTTCTTTCGCACTCACGGAGTTGCCATTTTGGAAGACTTCATGATAACATTGGCGGATGGGGTCGCTAGCATCTATCTAGAGCTTATTTCTGTAGACAGCAAATTTTCAAATGAAATGAATAGTGGAGGATTAAGTATCTGTAGCCTTTCTAGTCGAGCACTCCAAAAACTACGTAACGAGGTAGCTCTATATCAGTGGTTGCATCAGAATCTGGAAGCAGTTGTATCGATGTATGAAGATCGCTTTGACCTCTACATTCTTCAAACCCAGGTTATCAACAACCTTGATGGTAGTGACGATACAGAAAGCCTTAGTTGGTGGAGAAAGTTCACACTGGGAAAAACTAAAGCTGCCCCATCATCACCCTTGCGATACTCCATAATCAGCGACTTTTCATTGCCCGTTAAACGAACCAAGGAGCTTAAAGCTCTATCGGGATGGAGGTACTACTTCAGTCTATTTCTGGAGTTATCAGACATCGGGATGCCAATTATCAGAGTGGTGTTGGATAAAGTGAGTAGCGTCATATCCTTCTTTCTCGTCACCTTGATCGGTAGATCAGTCGGACTCATCTTCACCGGCATTAGACAGTCTCTCCGCTGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

511

Amino Acids

57.04

Weight (kDa)

7.92

Isoelectric Point (pI)

41.23

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3685 PF12452 322 - 411 5.5e-06 Protein of unknown function (DUF3685)
DUF3685 PF12452 441 - 512 2.3e-08 Protein of unknown function (DUF3685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AccB7I CCANNNNNTGG 1 cut(s) 398
AccI GTMKAC 1 cut(s) 1020
AccIII TCCGGA 1 cut(s) 45
AciI CCGC 3 cut(s) 236, 980, 1525
AclWI GGATC 3 cut(s) 187, 864, 901
AcsI RAATTY 5 cut(s) 104, 149, 869, 887, 1028
AcuI CTGAAG 2 cut(s) 606, 1363
AcyI GRCGYC 1 cut(s) 495
AfaI GTAC 4 cut(s) 217, 373, 602, 1373
AfiI CCNNNNNNNGG 2 cut(s) 398, 551
AflIII ACRYGT 1 cut(s) 10
AgsI TTSAA 7 cut(s) 172, 341, 408, 448, 632, 1035, 1190
AjnI CCWGG 1 cut(s) 1194
AloI GAACNNNNNNTCC 2 cut(s) 513, 545
Alw21I GWGCWC 1 cut(s) 1087
Alw26I GTCTC 4 cut(s) 27, 419, 632, 1524
AlwI GGATC 3 cut(s) 187, 864, 901
AlwNI CAGNNNCTG 1 cut(s) 1138
Ama87I CYCGRG 1 cut(s) 899
Aor13HI TCCGGA 1 cut(s) 45
AoxI GGCC 1 cut(s) 590
ApeKI GCWGC 3 cut(s) 78, 719, 1277
ApoI RAATTY 5 cut(s) 104, 149, 869, 887, 1028
Asp700I GAANNNNTTC 1 cut(s) 908
AspS9I GGNCC 1 cut(s) 590
AsuC2I CCSGG 2 cut(s) 900, 901
AsuHPI GGTGA 6 cut(s) 290, 452, 478, 1281, 1462, 1495
AsuNHI GCTAGC 1 cut(s) 992
AvaI CYCGRG 1 cut(s) 899
BauI CACGAG 1 cut(s) 96
BbsI GAAGAC 1 cut(s) 966
Bbv12I GWGCWC 1 cut(s) 1087
BbvI GCAGC 3 cut(s) 65, 731, 1264
BccI CCATC 7 cut(s) 239, 506, 673, 977, 1208, 1291, 1359
BceAI ACGGC 2 cut(s) 312, 744
BcgI CGANNNNNNTGC 2 cut(s) 1134, 1168
BciT130I CCWGG 1 cut(s) 1196
BclI TGATCA 1 cut(s) 795
BcnI CCSGG 2 cut(s) 900, 901
BcoDI GTCTC 4 cut(s) 27, 419, 632, 1524
BfaI CTAG 5 cut(s) 66, 300, 993, 1004, 1077
BfmI CTRYAG 2 cut(s) 1017, 1066
BglII AGATCT 1 cut(s) 648
BisI GCNGC 3 cut(s) 79, 720, 1278
BlsI GCNGC 3 cut(s) 80, 721, 1279
Bme1390I CCNGG 3 cut(s) 900, 901, 1196
BmeT110I CYCGRG 1 cut(s) 899
BmgT120I GGNCC 1 cut(s) 590
BmiI GGNNCC 1 cut(s) 270
BmrFI CCNGG 3 cut(s) 900, 901, 1196
BmrI ACTGGG 1 cut(s) 1271
BmsI GCATC 5 cut(s) 39, 808, 1005, 1138, 1401
BmtI GCTAGC 1 cut(s) 996
BmuI ACTGGG 1 cut(s) 1271
BpiI GAAGAC 1 cut(s) 966
BpmI CTGGAG 2 cut(s) 345, 1412
BpuEI CTTGAG 1 cut(s) 943
BpuMI CCSGG 2 cut(s) 900, 901
Bsa29I ATCGAT 1 cut(s) 1154
BsaAI YACGTR 2 cut(s) 315, 1100
BsaHI GRCGYC 1 cut(s) 495
BsaJI CCNNGG 4 cut(s) 550, 899, 1194, 1341
BsaWI WCCGGW 1 cut(s) 45
BsaXI ACNNNNNCTCC 4 cut(s) 845, 875, 1506, 1536
Bsc4I CCNNNNNNNGG 2 cut(s) 398, 551
Bse118I RCCGGY 1 cut(s) 1505
Bse1I ACTGG 1 cut(s) 1266
Bse3DI GCAATG 1 cut(s) 1322
BseAI TCCGGA 1 cut(s) 45
BseBI CCWGG 1 cut(s) 1196
BseCI ATCGAT 1 cut(s) 1154
BseDI CCNNGG 4 cut(s) 550, 899, 1194, 1341
BseGI GGATG 7 cut(s) 54, 466, 684, 823, 988, 1370, 1416
BseLI CCNNNNNNNGG 2 cut(s) 398, 551
BseMI GCAATG 1 cut(s) 1322
BseMII CTCAG 2 cut(s) 206, 608
BseNI ACTGG 1 cut(s) 1266
BseRI GAGGAG 2 cut(s) 130, 398
BseXI GCAGC 3 cut(s) 65, 731, 1264
Bsh1285I CGRYCG 1 cut(s) 378
BshFI GGCC 1 cut(s) 592
BshVI ATCGAT 1 cut(s) 1154
BsiEI CGRYCG 1 cut(s) 378
BsiHKAI GWGCWC 1 cut(s) 1087
BsiHKCI CYCGRG 1 cut(s) 899
BsiSI CCGG 3 cut(s) 46, 900, 1506
BslI CCNNNNNNNGG 2 cut(s) 398, 551
BsmAI GTCTC 4 cut(s) 27, 419, 632, 1524
BsmI GAATGC 1 cut(s) 807
BsnI GGCC 1 cut(s) 592
BsoBI CYCGRG 1 cut(s) 899
Bsp1286I GDGCHC 1 cut(s) 1087
Bsp13I TCCGGA 1 cut(s) 45
BspACI CCGC 3 cut(s) 236, 980, 1525
BspANI GGCC 1 cut(s) 592
BspCNI CTCAG 2 cut(s) 205, 607
BspDI ATCGAT 1 cut(s) 1154
BspEI TCCGGA 1 cut(s) 45
BspHI TCATGA 1 cut(s) 966
BspLI GGNNCC 1 cut(s) 270
BspOI GCTAGC 1 cut(s) 996
BspPI GGATC 3 cut(s) 187, 864, 901
BsrDI GCAATG 1 cut(s) 1322
BsrFI RCCGGY 1 cut(s) 1505
BsrI ACTGG 1 cut(s) 1266
BssAI RCCGGY 1 cut(s) 1505
BssECI CCNNGG 4 cut(s) 550, 899, 1194, 1341
BssNI GRCGYC 1 cut(s) 495
BssSI CACGAG 1 cut(s) 96
BssT1I CCWWGG 2 cut(s) 550, 1341
Bst2BI CACGAG 1 cut(s) 96
Bst2UI CCWGG 1 cut(s) 1196
Bst4CI ACNGT 2 cut(s) 750, 1518
Bst6I CTCTTC 2 cut(s) 364, 630
BstACI GRCGYC 1 cut(s) 495
BstBAI YACGTR 2 cut(s) 315, 1100
BstC8I GCNNGC 2 cut(s) 724, 994
BstDEI CTNAG 3 cut(s) 192, 594, 1238
BstEII GGTNACC 1 cut(s) 278
BstENI CCTNNNNNAGG 1 cut(s) 549
BstF5I GGATG 7 cut(s) 54, 466, 684, 823, 988, 1370, 1416
BstMAI GTCTC 4 cut(s) 27, 419, 632, 1524
BstMCI CGRYCG 1 cut(s) 378
BstMWI GCNNNNNNNGC 5 cut(s) 49, 233, 716, 728, 933
BstNI CCWGG 1 cut(s) 1196
BstNSI RCATGY 2 cut(s) 14, 726
BstPI GGTNACC 1 cut(s) 278
BstSCI CCNGG 3 cut(s) 898, 899, 1194
BstSFI CTRYAG 2 cut(s) 1017, 1066
BstSNI TACGTA 2 cut(s) 315, 1100
BstV1I GCAGC 3 cut(s) 65, 731, 1264
BstV2I GAAGAC 1 cut(s) 966
BstX2I RGATCY 3 cut(s) 648, 856, 893
BstXI CCANNNNNNTGG 1 cut(s) 890
BstYI RGATCY 3 cut(s) 648, 856, 893
Bsu15I ATCGAT 1 cut(s) 1154
BsuRI GGCC 1 cut(s) 592
BsuTUI ATCGAT 1 cut(s) 1154
BtsCI GGATG 7 cut(s) 54, 466, 684, 823, 988, 1370, 1416
BtsIMutI CAGTG 3 cut(s) 762, 1127, 1259
Cac8I GCNNGC 2 cut(s) 724, 994
CaiI CAGNNNCTG 1 cut(s) 1138
CciI TCATGA 1 cut(s) 966
Cfr10I RCCGGY 1 cut(s) 1505
Cfr13I GGNCC 1 cut(s) 590
Cfr9I CCCGGG 1 cut(s) 899
ClaI ATCGAT 1 cut(s) 1154
CseI GACGC 2 cut(s) 503, 1438
Csp6I GTAC 4 cut(s) 216, 372, 601, 1372
CviAII CATG 4 cut(s) 11, 615, 723, 967
CviQI GTAC 4 cut(s) 216, 372, 601, 1372
DdeI CTNAG 3 cut(s) 192, 594, 1238
Eam1104I CTCTTC 2 cut(s) 364, 630
EarI CTCTTC 2 cut(s) 364, 630
EciI GGCGGA 2 cut(s) 251, 995
Eco105I TACGTA 2 cut(s) 315, 1100
Eco130I CCWWGG 2 cut(s) 550, 1341
Eco32I GATATC 1 cut(s) 582
Eco57I CTGAAG 2 cut(s) 606, 1363
Eco88I CYCGRG 1 cut(s) 899
Eco91I GGTNACC 1 cut(s) 278
EcoNI CCTNNNNNAGG 1 cut(s) 549
EcoO109I RGGNCCY 1 cut(s) 590
EcoO65I GGTNACC 1 cut(s) 278
EcoRII CCWGG 1 cut(s) 1194
EcoRV GATATC 1 cut(s) 582
EcoT14I CCWWGG 2 cut(s) 550, 1341
ErhI CCWWGG 2 cut(s) 550, 1341
FaeI CATG 4 cut(s) 14, 618, 726, 970
FalI AAGNNNNNCTT 4 cut(s) 127, 159, 462, 494
FatI CATG 4 cut(s) 10, 614, 722, 966
FbaI TGATCA 1 cut(s) 795
FblI GTMKAC 1 cut(s) 1020
Fnu4HI GCNGC 3 cut(s) 79, 720, 1278
FokI GGATG 7 cut(s) 61, 473, 691, 830, 995, 1377, 1423
Fsp4HI GCNGC 3 cut(s) 79, 720, 1278
FspBI CTAG 5 cut(s) 66, 300, 993, 1004, 1077
GluI GCNGC 3 cut(s) 79, 720, 1278
GsuI CTGGAG 2 cut(s) 345, 1412
HaeIII GGCC 1 cut(s) 592
HapII CCGG 3 cut(s) 46, 900, 1506
HgaI GACGC 2 cut(s) 503, 1438
Hin1I GRCGYC 1 cut(s) 495
Hin1II CATG 4 cut(s) 14, 618, 726, 970
HindIII AAGCTT 3 cut(s) 141, 476, 906
HinfI GANTC 7 cut(s) 172, 200, 331, 485, 767, 1135, 1494
HpaII CCGG 3 cut(s) 46, 900, 1506
HphI GGTGA 6 cut(s) 290, 452, 478, 1281, 1462, 1495
Hpy166II GTNNAC 4 cut(s) 61, 216, 1021, 1257
Hpy188I TCNGA 9 cut(s) 586, 624, 670, 772, 800, 1134, 1402, 1424, 1493
Hpy8I GTNNAC 4 cut(s) 61, 216, 1021, 1257
HpyAV CCTTC 3 cut(s) 36, 581, 1468
HpyCH4III ACNGT 2 cut(s) 750, 1518
HpyCH4IV ACGT 2 cut(s) 314, 1099
HpyCH4V TGCA 5 cut(s) 52, 123, 726, 866, 1129
HpyF10VI GCNNNNNNNGC 5 cut(s) 49, 233, 716, 728, 933
HpyF3I CTNAG 3 cut(s) 192, 594, 1238
HpySE526I ACGT 2 cut(s) 314, 1099
Hsp92I GRCGYC 1 cut(s) 495
Hsp92II CATG 4 cut(s) 14, 618, 726, 970
Kpn2I TCCGGA 1 cut(s) 45
Ksp22I TGATCA 1 cut(s) 795
LmnI GCTCC 2 cut(s) 48, 1345
Lsp1109I GCAGC 3 cut(s) 65, 731, 1264
LweI GCATC 5 cut(s) 39, 808, 1005, 1138, 1401
MaeI CTAG 5 cut(s) 66, 300, 993, 1004, 1077
MaeII ACGT 2 cut(s) 314, 1099
MaeIII GTNAC 4 cut(s) 278, 1100, 1220, 1468
MboII GAAGA 8 cut(s) 351, 405, 644, 647, 971, 1175, 1178, 1492
MflI RGATCY 3 cut(s) 648, 856, 893
MhlI GDGCHC 1 cut(s) 1087
MluCI AATT 8 cut(s) 104, 149, 664, 696, 869, 887, 1028, 1416
MlyI GAGTC 1 cut(s) 1488
MmeI TCCRAC 3 cut(s) 379, 1413, 1471
MroI TCCGGA 1 cut(s) 45
MroXI GAANNNNTTC 1 cut(s) 908
MseI TTAA 4 cut(s) 153, 1058, 1332, 1350
MslI CAYNNNNRTG 1 cut(s) 1409
MspA1I CMGCKG 1 cut(s) 1527
MspI CCGG 3 cut(s) 46, 900, 1506
MspR9I CCNGG 3 cut(s) 900, 901, 1196
Mva1269I GAATGC 1 cut(s) 807
MvaI CCWGG 1 cut(s) 1196
MwoI GCNNNNNNNGC 5 cut(s) 49, 233, 716, 728, 933
NciI CCSGG 2 cut(s) 900, 901
NheI GCTAGC 1 cut(s) 992
NlaIII CATG 4 cut(s) 14, 618, 726, 970
NlaIV GGNNCC 1 cut(s) 270
NmuCI GTSAC 3 cut(s) 278, 1220, 1468
NspI RCATGY 2 cut(s) 14, 726
PaeI GCATGC 1 cut(s) 726
PagI TCATGA 1 cut(s) 966
PciI ACATGT 1 cut(s) 10
PctI GAATGC 1 cut(s) 807
PdmI GAANNNNTTC 1 cut(s) 908
PfeI GAWTC 6 cut(s) 172, 200, 331, 485, 767, 1135
PflMI CCANNNNNTGG 1 cut(s) 398
PkrI GCNGC 3 cut(s) 80, 721, 1279
Ple19I CGATCG 1 cut(s) 378
PleI GAGTC 1 cut(s) 1488
PpsI GAGTC 1 cut(s) 1488
Ppu21I YACGTR 2 cut(s) 315, 1100
PscI ACATGT 1 cut(s) 10
Psp6I CCWGG 1 cut(s) 1194
PspEI GGTNACC 1 cut(s) 278
PspGI CCWGG 1 cut(s) 1194
PspN4I GGNNCC 1 cut(s) 270
PspPI GGNCC 1 cut(s) 590
PstNI CAGNNNCTG 1 cut(s) 1138
PsuI RGATCY 3 cut(s) 648, 856, 893
PvuI CGATCG 1 cut(s) 378
RsaI GTAC 4 cut(s) 217, 373, 602, 1373
RsaNI GTAC 4 cut(s) 216, 372, 601, 1372
RseI CAYNNNNRTG 1 cut(s) 1409
SaqAI TTAA 4 cut(s) 153, 1058, 1332, 1350
SatI GCNGC 3 cut(s) 79, 720, 1278
Sau96I GGNCC 1 cut(s) 590
SchI GAGTC 1 cut(s) 1488
ScrFI CCNGG 3 cut(s) 900, 901, 1196
SduI GDGCHC 1 cut(s) 1087
SfaNI GCATC 5 cut(s) 39, 808, 1005, 1138, 1401
SfcI CTRYAG 2 cut(s) 1017, 1066
SmaI CCCGGG 1 cut(s) 901
SmiMI CAYNNNNRTG 1 cut(s) 1409
SmlI CTYRAG 1 cut(s) 922
SmoI CTYRAG 1 cut(s) 922
SnaBI TACGTA 2 cut(s) 315, 1100
SphI GCATGC 1 cut(s) 726
Sse9I AATT 8 cut(s) 104, 149, 664, 696, 869, 887, 1028, 1416
SsiI CCGC 3 cut(s) 236, 980, 1525
SspMI CTAG 5 cut(s) 66, 300, 993, 1004, 1077
StyD4I CCNGG 3 cut(s) 898, 899, 1194
StyI CCWWGG 2 cut(s) 550, 1341
TaaI ACNGT 2 cut(s) 750, 1518
TaiI ACGT 2 cut(s) 317, 1102
TaqI TCGA 4 cut(s) 32, 703, 1081, 1154
TasI AATT 8 cut(s) 104, 149, 664, 696, 869, 887, 1028, 1416
TatI WGTACW 2 cut(s) 215, 600
TfiI GAWTC 6 cut(s) 172, 200, 331, 485, 767, 1135
Tru1I TTAA 4 cut(s) 153, 1058, 1332, 1350
Tru9I TTAA 4 cut(s) 153, 1058, 1332, 1350
TscAI CASTG 3 cut(s) 769, 1127, 1266
TseFI GTSAC 3 cut(s) 278, 1220, 1468
TseI GCWGC 3 cut(s) 78, 719, 1277
Tsp45I GTSAC 3 cut(s) 278, 1220, 1468
TspDTI ATGAA 7 cut(s) 18, 825, 955, 1053, 1058, 1176, 1311
TspGWI ACGGA 1 cut(s) 957
TspMI CCCGGG 1 cut(s) 899
TspRI CASTG 3 cut(s) 769, 1127, 1266
Van91I CCANNNNNTGG 1 cut(s) 398
XagI CCTNNNNNAGG 1 cut(s) 549
XapI RAATTY 5 cut(s) 104, 149, 869, 887, 1028
XbaI TCTAGA 1 cut(s) 1003
XceI RCATGY 2 cut(s) 14, 726
XmaI CCCGGG 1 cut(s) 899
XmiI GTMKAC 1 cut(s) 1020
XmnI GAANNNNTTC 1 cut(s) 908
XspI CTAG 5 cut(s) 66, 300, 993, 1004, 1077
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.