Basic Information

Type: gene

Biological Identity

Species

pyrus_communis

Chromosome

Chr5

Orthogroup ID

OG0003845

Physical Location & Seq

Genomic Coordinates Reverse (-)

19640787 .. 19644752

Gene Structure 3966 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

pycom05g16320.3

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1497 bp

ATGGCGGAATGTCTGGCTTCACCTTTATGTATGAAGCTGCAGATGCAGAGAACTTATGTCGCAGAGAAAGGCTTTGTACACTGGAGTTCACGTCTGAAGAAAGCGCAAAGTAGGAAGTATTCGTATGGAAGCTGCAAGACAGTTCCTTTTCCGACCTGGAGAATGTGTGAGTTCACTGCTCCTGGCATTTCAAATGTGAAAGTTGGTCCTTTTTCTGAGGCTTCCTCGAAATGTGCTTGCTTGGGGTCTTTGGTAGGCTCTGATGGTGCAAAAGCCTCTGATTGGGTACCTATTGCTGATCAAGTGCTTCTGACAGCCAGTGTATTTCTCACATATATGGCTGGAGTAATTCCTGGTCGTAGCTCTAGTCCAACTTTTCAAAAGGACATTTCCAAAGACAATGTGGGCTGTGAAACCTCAACCGCTTCTGTGAAAAGGAAACTTTCAGATTCACTCCAAGCTTTTGAACTTGGGGGTAATTTGGGAGACAGGGTCCTTCAACGTGAAGGATACACTGCAAAGCGACCTTTAAGTTTGAATGCTGTTGCTGATGGTCCAAGATTAAGATTGCTCTGGGCATCATTTCTGCGAATTGAGGAAGAGGTGATTAATATCTCAAATTCTGGAATTTCTAAATTGGATGAGTGCTTGACGGATTTTTCTGATGTTATACGAAAGTCGTGTCAGCCTGTCTGCATGAGCTGGTTAGAAACAGAACTTCATCTTTTAAACAGCAAGCCTACCAAGGCACTTGTCACGCTGATGGATGGAAAGTTAGATGGAGACAATACTGTTTTACAGAACATCAGGAACTCAGGCAAGGAAGACCTTTATGCAGAACTAATGTGCTTTCTCAGTTTCGGTTCTCTCAGGGAGGGATGCTGTTATGACGGTAGTCTGTTTAAGAAACACGGAGTTTCCATACTGGAAGATTTGGTGATAAGTTTAGCAGATGGGATAGTAAGCATATATTTGGAGCTTATTTCTGTTGACAGCAATTTCTCAGATGAAATGGATAACCTGCCTTTGACATTGTGTACATTGTCAACACGAGCACTTCAAAGATTACGAAATGAGGTAGCTTTGTACCAATGGTTGTATCAAAATTTGGAGGCAGTTGCATCAATGTATGAGGATCGATTTGATTTATGGACATTTCAGAGCCGGCTCATCGAGGAATCAAACAATAGCTGGACTGAGAATTATAATTGGTGGAAGTGGCTTACCGGGAAAAAATCTGACACCACATCATCATTACATCAGGTTGTGATAAGTCAATTCTCTATGCCTGTAAAGCGAACAAAAGAATTAAGGGCCCTTACGGGGTGGAGGTATTACTTCAGCCTATTCCTTGAGTTATATGACATCAGTTTGCCTTTGATTAGAGCAATTGTTGACAGCGTCAGCAAGGGTCTCTCCTTTTTTCTAAAATGCTTGATTGGAAGGTCATTAGGACTTATCTACACCGGAATTAGACAGTCTCTACGATGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3685

Protein Analysis

499

Amino Acids

55.99

Weight (kDa)

8.25

Isoelectric Point (pI)

47.93

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48830 AT5G48830
fragaria_vesca	FvH4_2g19230 FvH4_2g19230 FvH4_2g19230 FvH4_2g19230 FvH4_2g19230
malus_domestica	MD05G1177200.v1.1
prunus_persica	Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1
pyrus_communis	pycom05g16320
rosa_chinensis	RchiOBHm_Chr6g0285011
rosa_laevigata	RLG00000012689
rosa_multiflora	Rmu_sc0006185.1_g000014
rosa_roxburghii	Rroxscaffold_7G00183840 Rroxscaffold_7G00184120
rosa_rugosa	Rorug06G0169500 Rorug06G0169600 Rorug06G0169700 Rorug06G0169800
rosa_samantha	Rh6AG281700 Rh6BG282300 Rh6CG284000 Rh6DG277100
rosa_wichuraiana	Rw6G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	1206
Acc36I	ACCTGC	1 cut(s)	1029
Acc65I	GGTACC	1 cut(s)	286
AccB1I	GGYRCC	1 cut(s)	286
AciI	CCGC	2 cut(s)	5, 423
AclWI	GGATC	1 cut(s)	1143
AcsI	RAATTY	3 cut(s)	619, 627, 1105
AcuI	CTGAAG	2 cut(s)	116, 1324
AfaI	GTAC	4 cut(s)	78, 288, 1039, 1088
AfiI	CCNNNNNNNGG	2 cut(s)	282, 1323
AgsI	TTSAA	6 cut(s)	192, 380, 467, 500, 538, 1061
AjiI	CACGTC	1 cut(s)	92
AjnI	CCWGG	3 cut(s)	155, 181, 352
AluBI	AGCT	8 cut(s)	37, 132, 363, 461, 702, 979, 1082, 1191
AluI	AGCT	8 cut(s)	37, 132, 363, 461, 702, 979, 1082, 1191
Alw21I	GWGCWC	1 cut(s)	1057
Alw26I	GTCTC	4 cut(s)	480, 777, 1418, 1485
AlwI	GGATC	1 cut(s)	1143
AoxI	GGCC	1 cut(s)	1314
ApaI	GGGCCC	1 cut(s)	1318
ApeKI	GCWGC	2 cut(s)	37, 132
ApoI	RAATTY	3 cut(s)	619, 627, 1105
ArsI	GACNNNNNNTTYG	2 cut(s)	667, 699
AseI	ATTAAT	1 cut(s)	609
Asp718I	GGTACC	1 cut(s)	286
AspLEI	GCGC	1 cut(s)	106
AspS9I	GGNCC	5 cut(s)	206, 493, 554, 1314, 1315
AsuC2I	CCSGG	1 cut(s)	1228
AsuHPI	GGTGA	3 cut(s)	12, 616, 949
AvaII	GGWCC	3 cut(s)	206, 493, 554
BaeGI	GKGCMC	1 cut(s)	1318
BanI	GGYRCC	1 cut(s)	286
BanII	GRGCYC	1 cut(s)	1318
BauI	CACGAG	1 cut(s)	1050
BbsI	GAAGAC	1 cut(s)	831
Bbv12I	GWGCWC	1 cut(s)	1057
BbvI	GCAGC	2 cut(s)	24, 119
BccI	CCATC	7 cut(s)	257, 545, 757, 761, 773, 947, 1482
BciT130I	CCWGG	3 cut(s)	157, 183, 354
BciVI	GTATCC	1 cut(s)	503
BclI	TGATCA	1 cut(s)	298
BcnI	CCSGG	1 cut(s)	1228
BcoDI	GTCTC	4 cut(s)	480, 777, 1418, 1485
BfaI	CTAG	1 cut(s)	366
BfmI	CTRYAG	1 cut(s)	38
BfuAI	ACCTGC	1 cut(s)	1029
BfuI	GTATCC	1 cut(s)	503
BisI	GCNGC	2 cut(s)	38, 133
BlsI	GCNGC	2 cut(s)	39, 134
Bme1390I	CCNGG	4 cut(s)	157, 183, 354, 1228
Bme18I	GGWCC	3 cut(s)	206, 493, 554
BmgBI	CACGTC	1 cut(s)	92
BmgT120I	GGNCC	5 cut(s)	206, 493, 554, 1314, 1315
BmiI	GGNNCC	3 cut(s)	288, 494, 1316
BmrFI	CCNGG	4 cut(s)	157, 183, 354, 1228
BmsI	GCATC	4 cut(s)	33, 587, 869, 1130
BoxI	GACNNNNGTC	1 cut(s)	894
BpiI	GAAGAC	1 cut(s)	831
BplI	GAGNNNNNCTC	2 cut(s)	209, 241
BpmI	CTGGAG	3 cut(s)	103, 178, 363
BpuEI	CTTGAG	1 cut(s)	1373
BpuMI	CCSGG	1 cut(s)	1228
Bsa29I	ATCGAT	1 cut(s)	1138
BsaBI	GATNNNNATC	1 cut(s)	611
BsaI	GGTCTC	1 cut(s)	1418
BsaJI	CCNNGG	1 cut(s)	744
BsaWI	WCCGGW	1 cut(s)	1466
BsaXI	ACNNNNNCTCC	6 cut(s)	76, 106, 151, 181, 477, 507
Bsc4I	CCNNNNNNNGG	2 cut(s)	282, 1323
Bse118I	RCCGGY	1 cut(s)	1164
Bse1I	ACTGG	3 cut(s)	86, 318, 930
Bse8I	GATNNNNATC	1 cut(s)	611
BseBI	CCWGG	3 cut(s)	157, 183, 354
BseCI	ATCGAT	1 cut(s)	1138
BseDI	CCNNGG	1 cut(s)	744
BseGI	GGATG	3 cut(s)	646, 772, 884
BseJI	GATNNNNATC	1 cut(s)	611
BseLI	CCNNNNNNNGG	2 cut(s)	282, 1323
BseMII	CTCAG	6 cut(s)	207, 828, 868, 883, 1017, 1188
BseNI	ACTGG	3 cut(s)	86, 318, 930
BseSI	GKGCMC	1 cut(s)	1318
BseXI	GCAGC	2 cut(s)	24, 119
BshFI	GGCC	1 cut(s)	1316
BshNI	GGYRCC	1 cut(s)	286
BshVI	ATCGAT	1 cut(s)	1138
BsiHKAI	GWGCWC	1 cut(s)	1057
BsiSI	CCGG	3 cut(s)	1165, 1227, 1467
BslI	CCNNNNNNNGG	2 cut(s)	282, 1323
BsmAI	GTCTC	4 cut(s)	480, 777, 1418, 1485
BsmI	GAATGC	1 cut(s)	544
BsnI	GGCC	1 cut(s)	1316
Bso31I	GGTCTC	1 cut(s)	1418
Bsp120I	GGGCCC	1 cut(s)	1314
Bsp1286I	GDGCHC	2 cut(s)	1057, 1318
Bsp1407I	TGTACA	2 cut(s)	76, 1037
Bsp143I	GATC	2 cut(s)	298, 1135
BspACI	CCGC	2 cut(s)	5, 423
BspANI	GGCC	1 cut(s)	1316
BspCNI	CTCAG	6 cut(s)	208, 827, 867, 882, 1016, 1189
BspDI	ATCGAT	1 cut(s)	1138
BspLI	GGNNCC	3 cut(s)	288, 494, 1316
BspMAI	CTGCAG	1 cut(s)	42
BspMI	ACCTGC	1 cut(s)	1029
BspPI	GGATC	1 cut(s)	1143
BspT107I	GGYRCC	1 cut(s)	286
BspTNI	GGTCTC	1 cut(s)	1418
BsrFI	RCCGGY	1 cut(s)	1164
BsrGI	TGTACA	2 cut(s)	76, 1037
BsrI	ACTGG	3 cut(s)	86, 318, 930
BssAI	RCCGGY	1 cut(s)	1164
BssECI	CCNNGG	1 cut(s)	744
BssMI	GATC	2 cut(s)	298, 1135
BssSI	CACGAG	1 cut(s)	1050
BssT1I	CCWWGG	1 cut(s)	744
Bst2BI	CACGAG	1 cut(s)	1050
Bst2UI	CCWGG	3 cut(s)	157, 183, 354
Bst4CI	ACNGT	4 cut(s)	142, 793, 893, 1479
Bst6I	CTCTTC	1 cut(s)	594
BstAUI	TGTACA	2 cut(s)	76, 1037
BstC8I	GCNNGC	3 cut(s)	238, 737, 1166
BstDEI	CTNAG	6 cut(s)	216, 814, 854, 869, 1003, 1197
BstF5I	GGATG	3 cut(s)	646, 772, 884
BstHHI	GCGC	1 cut(s)	106
BstKTI	GATC	2 cut(s)	301, 1138
BstMAI	GTCTC	4 cut(s)	480, 777, 1418, 1485
BstMBI	GATC	2 cut(s)	298, 1135
BstMWI	GCNNNNNNNGC	2 cut(s)	43, 1294
BstNI	CCWGG	3 cut(s)	157, 183, 354
BstPAI	GACNNNNGTC	1 cut(s)	894
BstSCI	CCNGG	4 cut(s)	155, 181, 352, 1226
BstSFI	CTRYAG	1 cut(s)	38
BstSLI	GKGCMC	1 cut(s)	1318
BstV1I	GCAGC	2 cut(s)	24, 119
BstV2I	GAAGAC	1 cut(s)	831
Bsu15I	ATCGAT	1 cut(s)	1138
BsuI	GTATCC	1 cut(s)	503
BsuRI	GGCC	1 cut(s)	1316
BsuTUI	ATCGAT	1 cut(s)	1138
BtrI	CACGTC	1 cut(s)	92
BtsCI	GGATG	3 cut(s)	646, 772, 884
BtsI	GCAGTG	2 cut(s)	174, 513
BtsIMutI	CAGTG	4 cut(s)	79, 174, 325, 513
BveI	ACCTGC	1 cut(s)	1029
Cac8I	GCNNGC	3 cut(s)	238, 737, 1166
CfoI	GCGC	1 cut(s)	106
Cfr10I	RCCGGY	1 cut(s)	1164
Cfr13I	GGNCC	5 cut(s)	206, 493, 554, 1314, 1315
ClaI	ATCGAT	1 cut(s)	1138
CseI	GACGC	1 cut(s)	1390
Csp6I	GTAC	4 cut(s)	77, 287, 1038, 1087
CviAII	CATG	1 cut(s)	697
CviQI	GTAC	4 cut(s)	77, 287, 1038, 1087
DdeI	CTNAG	6 cut(s)	216, 814, 854, 869, 1003, 1197
DpnI	GATC	2 cut(s)	300, 1137
DpnII	GATC	2 cut(s)	298, 1135
DraI	TTTAAA	1 cut(s)	729
Eam1104I	CTCTTC	1 cut(s)	594
EarI	CTCTTC	1 cut(s)	594
EciI	GGCGGA	1 cut(s)	20
Eco130I	CCWWGG	1 cut(s)	744
Eco24I	GRGCYC	1 cut(s)	1318
Eco31I	GGTCTC	1 cut(s)	1418
Eco47I	GGWCC	3 cut(s)	206, 493, 554
Eco57I	CTGAAG	2 cut(s)	116, 1324
EcoO109I	RGGNCCY	3 cut(s)	493, 1314, 1315
EcoRII	CCWGG	3 cut(s)	155, 181, 352
EcoT14I	CCWWGG	1 cut(s)	744
EcoT38I	GRGCYC	1 cut(s)	1318
ErhI	CCWWGG	1 cut(s)	744
FaeI	CATG	1 cut(s)	700
FatI	CATG	1 cut(s)	696
FbaI	TGATCA	1 cut(s)	298
Fnu4HI	GCNGC	2 cut(s)	38, 133
FokI	GGATG	3 cut(s)	653, 779, 891
FriOI	GRGCYC	1 cut(s)	1318
Fsp4HI	GCNGC	2 cut(s)	38, 133
FspBI	CTAG	1 cut(s)	366
GlaI	GCGC	1 cut(s)	105
GluI	GCNGC	2 cut(s)	38, 133
GsuI	CTGGAG	3 cut(s)	103, 178, 363
HaeIII	GGCC	1 cut(s)	1316
HapII	CCGG	3 cut(s)	1165, 1227, 1467
HgaI	GACGC	1 cut(s)	1390
HhaI	GCGC	1 cut(s)	106
Hin1II	CATG	1 cut(s)	700
Hin6I	GCGC	1 cut(s)	104
HinP1I	GCGC	1 cut(s)	104
HincII	GTYRAC	3 cut(s)	991, 1047, 1396
HindII	GTYRAC	3 cut(s)	991, 1047, 1396
HindIII	AAGCTT	1 cut(s)	459
HinfI	GANTC	2 cut(s)	449, 1178
HpaII	CCGG	3 cut(s)	1165, 1227, 1467
HphI	GGTGA	3 cut(s)	12, 616, 949
Hpy166II	GTNNAC	7 cut(s)	79, 89, 174, 991, 1038, 1047, 1396
Hpy188III	TCNNGA	2 cut(s)	624, 808
Hpy8I	GTNNAC	7 cut(s)	79, 89, 174, 991, 1038, 1047, 1396
HpyAV	CCTTC	3 cut(s)	500, 506, 1437
HpyCH4III	ACNGT	4 cut(s)	142, 793, 893, 1479
HpyCH4IV	ACGT	2 cut(s)	91, 502
HpyCH4V	TGCA	8 cut(s)	40, 46, 135, 269, 518, 696, 836, 1121
HpyF10VI	GCNNNNNNNGC	2 cut(s)	43, 1294
HpyF3I	CTNAG	6 cut(s)	216, 814, 854, 869, 1003, 1197
HpySE526I	ACGT	2 cut(s)	91, 502
Hsp92II	CATG	1 cut(s)	700
HspAI	GCGC	1 cut(s)	104
KpnI	GGTACC	1 cut(s)	290
KroI	GCCGGC	1 cut(s)	1164
KroNI	GCCGGC	1 cut(s)	1166
Ksp22I	TGATCA	1 cut(s)	298
Kzo9I	GATC	2 cut(s)	298, 1135
LmnI	GCTCC	2 cut(s)	184, 976
Lsp1109I	GCAGC	2 cut(s)	24, 119
LweI	GCATC	4 cut(s)	33, 587, 869, 1130
MaeI	CTAG	1 cut(s)	366
MaeII	ACGT	2 cut(s)	91, 502
MaeIII	GTNAC	1 cut(s)	754
MalI	GATC	2 cut(s)	300, 1137
MboI	GATC	2 cut(s)	298, 1135
MboII	GAAGA	4 cut(s)	109, 611, 836, 941
MfeI	CAATTG	1 cut(s)	1389
MhlI	GDGCHC	2 cut(s)	1057, 1318
MmeI	TCCRAC	2 cut(s)	176, 395
MroNI	GCCGGC	1 cut(s)	1164
MseI	TTAA	6 cut(s)	530, 563, 609, 728, 903, 1310
MslI	CAYNNNNRTG	3 cut(s)	25, 335, 761
MspI	CCGG	3 cut(s)	1165, 1227, 1467
MspR9I	CCNGG	4 cut(s)	157, 183, 354, 1228
MunI	CAATTG	1 cut(s)	1389
Mva1269I	GAATGC	1 cut(s)	544
MvaI	CCWGG	3 cut(s)	157, 183, 354
MwoI	GCNNNNNNNGC	2 cut(s)	43, 1294
NaeI	GCCGGC	1 cut(s)	1166
NciI	CCSGG	1 cut(s)	1228
NdeII	GATC	2 cut(s)	298, 1135
NgoMIV	GCCGGC	1 cut(s)	1164
NlaIII	CATG	1 cut(s)	700
NlaIV	GGNNCC	3 cut(s)	288, 494, 1316
NmuCI	GTSAC	1 cut(s)	754
PctI	GAATGC	1 cut(s)	544
PdiI	GCCGGC	1 cut(s)	1166
PfeI	GAWTC	2 cut(s)	449, 1178
PflFI	GACNNNGTC	2 cut(s)	491, 1400
PkrI	GCNGC	2 cut(s)	39, 134
PpuMI	RGGWCCY	1 cut(s)	493
PshAI	GACNNNNGTC	1 cut(s)	894
PshBI	ATTAAT	1 cut(s)	609
PsiI	TTATAA	1 cut(s)	1206
Psp5II	RGGWCCY	1 cut(s)	493
Psp6I	CCWGG	3 cut(s)	155, 181, 352
PspGI	CCWGG	3 cut(s)	155, 181, 352
PspN4I	GGNNCC	3 cut(s)	288, 494, 1316
PspOMI	GGGCCC	1 cut(s)	1314
PspPI	GGNCC	5 cut(s)	206, 493, 554, 1314, 1315
PspPPI	RGGWCCY	1 cut(s)	493
PstI	CTGCAG	1 cut(s)	42
PsyI	GACNNNGTC	2 cut(s)	491, 1400
RsaI	GTAC	4 cut(s)	78, 288, 1039, 1088
RsaNI	GTAC	4 cut(s)	77, 287, 1038, 1087
RseI	CAYNNNNRTG	3 cut(s)	25, 335, 761
SaqAI	TTAA	6 cut(s)	530, 563, 609, 728, 903, 1310
SatI	GCNGC	2 cut(s)	38, 133
Sau3AI	GATC	2 cut(s)	298, 1135
Sau96I	GGNCC	5 cut(s)	206, 493, 554, 1314, 1315
ScrFI	CCNGG	4 cut(s)	157, 183, 354, 1228
SduI	GDGCHC	2 cut(s)	1057, 1318
SfaNI	GCATC	4 cut(s)	33, 587, 869, 1130
SfcI	CTRYAG	1 cut(s)	38
SinI	GGWCC	3 cut(s)	206, 493, 554
SmiMI	CAYNNNNRTG	3 cut(s)	25, 335, 761
SmlI	CTYRAG	1 cut(s)	1352
SmoI	CTYRAG	1 cut(s)	1352
SsiI	CCGC	2 cut(s)	5, 423
SspMI	CTAG	1 cut(s)	366
StyD4I	CCNGG	4 cut(s)	155, 181, 352, 1226
StyI	CCWWGG	1 cut(s)	744
TaaI	ACNGT	4 cut(s)	142, 793, 893, 1479
TaiI	ACGT	2 cut(s)	94, 505
TaqI	TCGA	3 cut(s)	227, 1138, 1173
TatI	WGTACW	2 cut(s)	76, 1037
TfiI	GAWTC	2 cut(s)	449, 1178
Tru1I	TTAA	6 cut(s)	530, 563, 609, 728, 903, 1310
Tru9I	TTAA	6 cut(s)	530, 563, 609, 728, 903, 1310
TscAI	CASTG	4 cut(s)	86, 181, 325, 520
TseFI	GTSAC	1 cut(s)	754
TseI	GCWGC	2 cut(s)	37, 132
Tsp45I	GTSAC	1 cut(s)	754
TspDTI	ATGAA	3 cut(s)	47, 710, 1023
TspGWI	ACGGA	2 cut(s)	668, 927
TspRI	CASTG	4 cut(s)	86, 181, 325, 520
Tth111I	GACNNNGTC	2 cut(s)	491, 1400
VpaK11BI	GGWCC	3 cut(s)	206, 493, 554
VspI	ATTAAT	1 cut(s)	609
XapI	RAATTY	3 cut(s)	619, 627, 1105
XcmI	CCANNNNNNNNNTGG	1 cut(s)	400
XspI	CTAG	1 cut(s)	366

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.