Basic Information

Type: gene

Biological Identity

Species

rosa_rugosa

Chromosome

GWHBQTZ00000006

Orthogroup ID

OG0003845

Physical Location & Seq

Genomic Coordinates Reverse (-)

25059723 .. 25061570

Gene Structure 1848 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rorug06G0169700.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1086 bp

ATGGTGGCATCTTCAGAGCACGAACACCCCAAGAAGGCCCTTGGATGGGCTGCCAGAGACACATCTGGTGTCCTCTCTCCTTTCAAGTTCTCAAGAAGGGAAACCGGAGAGAAAGACGTGACGTTCAAAGTTTTGTTCTGCGGTATATGCCATTCCGACCTTCACATGGTTAAGAACGAATGGGGCGTCTCTACCTATCCTCTTGTTCCCGGACATGAGATTGTGGGTAAAGTGACAGAACTGGGGAGCAAAGTCCAAAAGTTTAAAGTTGGAGACAAAGTTGGTGTTGGGTGCTTGGTAGGCTCATGCAAATCTTGCGACAGCTGTGCTAATGATTTGGAAAATTACTGCCCTAAATCAGTACAGACTTACGGCGCCAACTACCTTGACGGAACCACCACATACGGCGGTTACTCTGACATCATGGTAGCGAATGAGGACTTTGTAATCCGTATTCCAGACAACCTGCCTCTTGATGGTGCTGCTCCTCTCCTCTGTGCCGGAATTACAACATATAGTCCCATGAGATATTTCGGACTTGACAAACCCGGCATGCATGTGGGGGTGGTTGGCCTTGGCGGTTTAGGTCACGTGGCGGTGAAGTTTGCCAAGGCTTTGGGGGTTAAGGTTACAGTGATCAGTACCTCCCCTAATAAGAAAGATGAAGCTATTAAACATCTCGGTGCTGATTCTTTCTTGGTCAGTCGTGACCAAGATCAGATGCAGGCTACCATGGGAACATTGGATGGTATCATCGACACAGTTTCTGCAGCCCACCCTCTCCCACCTCTGATTAGTTTATTGAAGGTTAATGGAAAGCTTGTGATGGTTGGAGCGCCAGAGAAGCCTCTTGAGCTCCCAGTTTTTTCCTTGCTAATGGGAAGGAAGATTTTAGCCGGTAGTAATATCGGAGGTATCAAGGAGACACAAGAGATGATAGATTTGGCAGCCAAACACAACATAACGGCCGACATCGAAGTTATCCCCATCGATTATTTGAACACTGCCATGGAGCGTCTTGCCAAAGGAGATGTTAGATACCGGTTTGTCATCGATATCGGAAACACATTAAAGTCGGCCACTTAA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3685

Protein Analysis

361

Amino Acids

38.71

Weight (kDa)

6.79

Isoelectric Point (pI)

21.59

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
ADH_N	PF08240	36 - 154	9.6e-27	Alcohol dehydrogenase GroES-like domain
ADH_zinc_N	PF00107	194 - 317	3.2e-22	Zinc-binding dehydrogenase
ADH_zinc_N_2	PF13602	227 - 346	7.4e-07	Zinc-binding dehydrogenase

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48830 AT5G48830
fragaria_vesca	FvH4_2g19230 FvH4_2g19230 FvH4_2g19230 FvH4_2g19230 FvH4_2g19230
malus_domestica	MD05G1177200.v1.1
prunus_persica	Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1
pyrus_communis	pycom05g16320
rosa_chinensis	RchiOBHm_Chr6g0285011
rosa_laevigata	RLG00000012689
rosa_multiflora	Rmu_sc0006185.1_g000014
rosa_roxburghii	Rroxscaffold_7G00183840 Rroxscaffold_7G00184120
rosa_rugosa	Rorug06G0169500 Rorug06G0169600 Rorug06G0169700 Rorug06G0169800
rosa_samantha	Rh6AG281700 Rh6BG282300 Rh6CG284000 Rh6DG277100
rosa_wichuraiana	Rw6G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
Acc36I	ACCTGC	1 cut(s)	474
AccB1I	GGYRCC	1 cut(s)	374
AciI	CCGC	4 cut(s)	141, 408, 579, 596
AcoI	YGGCCR	2 cut(s)	966, 1077
AcvI	CACGTG	1 cut(s)	592
AcyI	GRCGYC	2 cut(s)	186, 375
AfaI	GTAC	2 cut(s)	363, 643
AfiI	CCNNNNNNNGG	5 cut(s)	34, 45, 46, 166, 476
AgeI	ACCGGT	1 cut(s)	1041
AgsI	TTSAA	4 cut(s)	85, 127, 805, 1000
AjiI	CACGTC	1 cut(s)	118
AluBI	AGCT	4 cut(s)	324, 668, 820, 856
AluI	AGCT	4 cut(s)	324, 668, 820, 856
Alw21I	GWGCWC	2 cut(s)	21, 858
Alw26I	GTCTC	4 cut(s)	51, 193, 267, 917
AlwNI	CAGNNNCTG	1 cut(s)	767
AoxI	GGCC	4 cut(s)	36, 571, 966, 1077
ApeKI	GCWGC	4 cut(s)	50, 482, 770, 947
ArsI	GACNNNNNNTTYG	2 cut(s)	171, 203
AsiGI	ACCGGT	1 cut(s)	1041
AspLEI	GCGC	2 cut(s)	377, 838
AspS9I	GGNCC	1 cut(s)	37
AsuC2I	CCSGG	2 cut(s)	210, 549
AsuHPI	GGTGA	1 cut(s)	610
BanI	GGYRCC	1 cut(s)	374
BanII	GRGCYC	1 cut(s)	858
BbrPI	CACGTG	1 cut(s)	592
Bbv12I	GWGCWC	2 cut(s)	21, 858
BbvI	GCAGC	4 cut(s)	37, 469, 782, 959
BccI	CCATC	5 cut(s)	39, 470, 740, 820, 995
BceAI	ACGGC	3 cut(s)	388, 421, 981
BcgI	CGANNNNNNTGC	2 cut(s)	308, 342
BclI	TGATCA	1 cut(s)	636
BcnI	CCSGG	2 cut(s)	210, 549
BcoDI	GTCTC	4 cut(s)	51, 193, 267, 917
BfmI	CTRYAG	1 cut(s)	768
BfoI	RGCGCY	2 cut(s)	378, 839
BfuAI	ACCTGC	1 cut(s)	474
BisI	GCNGC	4 cut(s)	51, 483, 771, 948
BlsI	GCNGC	4 cut(s)	52, 484, 772, 949
Bme1390I	CCNGG	2 cut(s)	210, 549
BmgBI	CACGTC	1 cut(s)	118
BmgT120I	GGNCC	1 cut(s)	37
BmiI	GGNNCC	2 cut(s)	376, 394
BmrFI	CCNGG	2 cut(s)	210, 549
BmrI	ACTGGG	2 cut(s)	251, 854
BmsI	GCATC	2 cut(s)	17, 711
BmuI	ACTGGG	2 cut(s)	251, 854
BpuEI	CTTGAG	2 cut(s)	76, 872
BpuMI	CCSGG	2 cut(s)	210, 549
Bsa29I	ATCGAT	2 cut(s)	990, 1053
BsaAI	YACGTR	1 cut(s)	592
BsaHI	GRCGYC	2 cut(s)	186, 375
BsaJI	CCNNGG	5 cut(s)	40, 574, 609, 732, 1008
BsaWI	WCCGGW	2 cut(s)	104, 1041
BsaXI	ACNNNNNCTCC	2 cut(s)	264, 294
Bsc4I	CCNNNNNNNGG	5 cut(s)	34, 45, 46, 166, 476
Bse118I	RCCGGY	2 cut(s)	896, 1041
Bse1I	ACTGG	2 cut(s)	246, 860
BseCI	ATCGAT	2 cut(s)	990, 1053
BseDI	CCNNGG	5 cut(s)	40, 574, 609, 732, 1008
BseGI	GGATG	2 cut(s)	50, 751
BseLI	CCNNNNNNNGG	5 cut(s)	34, 45, 46, 166, 476
BseNI	ACTGG	2 cut(s)	246, 860
BseRI	GAGGAG	2 cut(s)	477, 482
BseX3I	CGGCCG	1 cut(s)	966
BseXI	GCAGC	4 cut(s)	37, 469, 782, 959
Bsh1285I	CGRYCG	1 cut(s)	969
BshFI	GGCC	4 cut(s)	38, 573, 968, 1079
BshNI	GGYRCC	1 cut(s)	374
BshTI	ACCGGT	1 cut(s)	1041
BshVI	ATCGAT	2 cut(s)	990, 1053
BsiEI	CGRYCG	1 cut(s)	969
BsiHKAI	GWGCWC	2 cut(s)	21, 858
BsiSI	CCGG	6 cut(s)	105, 210, 501, 549, 897, 1042
BslFI	GGGAC	1 cut(s)	504
BslI	CCNNNNNNNGG	5 cut(s)	34, 45, 46, 166, 476
BsmAI	GTCTC	4 cut(s)	51, 193, 267, 917
BsmBI	CGTCTC	1 cut(s)	193
BsmFI	GGGAC	1 cut(s)	504
BsnI	GGCC	4 cut(s)	38, 573, 968, 1079
Bsp1286I	GDGCHC	2 cut(s)	21, 858
Bsp143I	GATC	2 cut(s)	636, 715
Bsp19I	CCATGG	2 cut(s)	732, 1008
BspACI	CCGC	4 cut(s)	141, 408, 579, 596
BspANI	GGCC	4 cut(s)	38, 573, 968, 1079
BspDI	ATCGAT	2 cut(s)	990, 1053
BspLI	GGNNCC	2 cut(s)	376, 394
BspMAI	CTGCAG	1 cut(s)	772
BspMI	ACCTGC	1 cut(s)	474
BspT107I	GGYRCC	1 cut(s)	374
BsrFI	RCCGGY	2 cut(s)	896, 1041
BsrI	ACTGG	2 cut(s)	246, 860
BssAI	RCCGGY	2 cut(s)	896, 1041
BssECI	CCNNGG	5 cut(s)	40, 574, 609, 732, 1008
BssMI	GATC	2 cut(s)	636, 715
BssNI	GRCGYC	2 cut(s)	186, 375
BssT1I	CCWWGG	5 cut(s)	40, 574, 609, 732, 1008
Bst4CI	ACNGT	2 cut(s)	634, 763
BstACI	GRCGYC	2 cut(s)	186, 375
BstAPI	GCANNNNNTGC	1 cut(s)	315
BstBAI	YACGTR	1 cut(s)	592
BstC8I	GCNNGC	2 cut(s)	554, 726
BstDSI	CCRYGG	2 cut(s)	732, 1008
BstF5I	GGATG	2 cut(s)	50, 751
BstH2I	RGCGCY	2 cut(s)	378, 839
BstHHI	GCGC	2 cut(s)	377, 838
BstKTI	GATC	2 cut(s)	639, 718
BstMAI	GTCTC	4 cut(s)	51, 193, 267, 917
BstMBI	GATC	2 cut(s)	636, 715
BstMCI	CGRYCG	1 cut(s)	969
BstMWI	GCNNNNNNNGC	5 cut(s)	147, 300, 315, 844, 853
BstNSI	RCATGY	2 cut(s)	556, 560
BstSCI	CCNGG	2 cut(s)	208, 547
BstSFI	CTRYAG	1 cut(s)	768
BstV1I	GCAGC	4 cut(s)	37, 469, 782, 959
BstXI	CCANNNNNNTGG	1 cut(s)	616
BstZI	CGGCCG	1 cut(s)	966
Bsu15I	ATCGAT	2 cut(s)	990, 1053
BsuRI	GGCC	4 cut(s)	38, 573, 968, 1079
BsuTUI	ATCGAT	2 cut(s)	990, 1053
BtgI	CCRYGG	2 cut(s)	732, 1008
BtrI	CACGTC	1 cut(s)	118
BtsCI	GGATG	2 cut(s)	50, 751
BtsI	GCAGTG	1 cut(s)	1002
BtsIMutI	CAGTG	2 cut(s)	639, 1002
BveI	ACCTGC	1 cut(s)	474
Cac8I	GCNNGC	2 cut(s)	554, 726
CaiI	CAGNNNCTG	1 cut(s)	767
CfoI	GCGC	2 cut(s)	377, 838
Cfr10I	RCCGGY	2 cut(s)	896, 1041
Cfr13I	GGNCC	1 cut(s)	37
ClaI	ATCGAT	2 cut(s)	990, 1053
CseI	GACGC	2 cut(s)	175, 1004
Csp6I	GTAC	2 cut(s)	362, 642
CspAI	ACCGGT	1 cut(s)	1041
CviAII	CATG	9 cut(s)	166, 215, 306, 424, 523, 553, 557, 733, 1009
CviQI	GTAC	2 cut(s)	362, 642
DinI	GGCGCC	1 cut(s)	376
DpnI	GATC	2 cut(s)	638, 717
DpnII	GATC	2 cut(s)	636, 715
DraI	TTTAAA	1 cut(s)	265
EaeI	YGGCCR	2 cut(s)	966, 1077
EagI	CGGCCG	1 cut(s)	966
Ecl136II	GAGCTC	1 cut(s)	856
EclXI	CGGCCG	1 cut(s)	966
Eco130I	CCWWGG	5 cut(s)	40, 574, 609, 732, 1008
Eco24I	GRGCYC	1 cut(s)	858
Eco32I	GATATC	1 cut(s)	1057
Eco52I	CGGCCG	1 cut(s)	966
Eco53kI	GAGCTC	1 cut(s)	856
Eco72I	CACGTG	1 cut(s)	592
EcoICRI	GAGCTC	1 cut(s)	856
EcoO109I	RGGNCCY	1 cut(s)	37
EcoRV	GATATC	1 cut(s)	1057
EcoT14I	CCWWGG	5 cut(s)	40, 574, 609, 732, 1008
EcoT22I	ATGCAT	1 cut(s)	558
EcoT38I	GRGCYC	1 cut(s)	858
EgeI	GGCGCC	1 cut(s)	376
EheI	GGCGCC	1 cut(s)	376
ErhI	CCWWGG	5 cut(s)	40, 574, 609, 732, 1008
Esp3I	CGTCTC	1 cut(s)	193
FaeI	CATG	9 cut(s)	169, 218, 309, 427, 526, 556, 560, 736, 1012
FaqI	GGGAC	1 cut(s)	504
FatI	CATG	9 cut(s)	165, 214, 305, 423, 522, 552, 556, 732, 1008
FbaI	TGATCA	1 cut(s)	636
Fnu4HI	GCNGC	4 cut(s)	51, 483, 771, 948
FokI	GGATG	2 cut(s)	57, 758
FriOI	GRGCYC	1 cut(s)	858
Fsp4HI	GCNGC	4 cut(s)	51, 483, 771, 948
GlaI	GCGC	2 cut(s)	376, 837
GluI	GCNGC	4 cut(s)	51, 483, 771, 948
HaeII	RGCGCY	2 cut(s)	378, 839
HaeIII	GGCC	4 cut(s)	38, 573, 968, 1079
HapII	CCGG	6 cut(s)	105, 210, 501, 549, 897, 1042
HgaI	GACGC	2 cut(s)	175, 1004
HhaI	GCGC	2 cut(s)	377, 838
Hin1I	GRCGYC	2 cut(s)	186, 375
Hin1II	CATG	9 cut(s)	169, 218, 309, 427, 526, 556, 560, 736, 1012
Hin6I	GCGC	2 cut(s)	375, 836
HinP1I	GCGC	2 cut(s)	375, 836
HindIII	AAGCTT	1 cut(s)	818
HinfI	GANTC	1 cut(s)	689
HpaII	CCGG	6 cut(s)	105, 210, 501, 549, 897, 1042
HphI	GGTGA	1 cut(s)	610
Hpy188I	TCNGA	8 cut(s)	16, 157, 418, 536, 720, 792, 911, 1061
Hpy188III	TCNNGA	5 cut(s)	93, 458, 473, 707, 851
HpyAV	CCTTC	5 cut(s)	28, 90, 170, 799, 876
HpyCH4III	ACNGT	2 cut(s)	634, 763
HpyCH4IV	ACGT	3 cut(s)	117, 122, 591
HpyCH4V	TGCA	4 cut(s)	309, 556, 724, 770
HpyF10VI	GCNNNNNNNGC	5 cut(s)	147, 300, 315, 844, 853
HpySE526I	ACGT	3 cut(s)	117, 122, 591
Hsp92I	GRCGYC	2 cut(s)	186, 375
Hsp92II	CATG	9 cut(s)	169, 218, 309, 427, 526, 556, 560, 736, 1012
HspAI	GCGC	2 cut(s)	375, 836
KasI	GGCGCC	1 cut(s)	374
Ksp22I	TGATCA	1 cut(s)	636
Kzo9I	GATC	2 cut(s)	636, 715
LmnI	GCTCC	5 cut(s)	246, 490, 833, 861, 1012
Lsp1109I	GCAGC	4 cut(s)	37, 469, 782, 959
LweI	GCATC	2 cut(s)	17, 711
MaeII	ACGT	3 cut(s)	117, 122, 591
MaeIII	GTNAC	6 cut(s)	118, 232, 410, 587, 628, 707
MalI	GATC	2 cut(s)	638, 717
MboI	GATC	2 cut(s)	636, 715
MboII	GAAGA	2 cut(s)	3, 898
MhlI	GDGCHC	2 cut(s)	21, 858
MluCI	AATT	2 cut(s)	343, 504
Mly113I	GGCGCC	1 cut(s)	375
MmeI	TCCRAC	3 cut(s)	180, 250, 811
Mph1103I	ATGCAT	1 cut(s)	558
MseI	TTAA	7 cut(s)	171, 264, 624, 672, 810, 1070, 1084
MslI	CAYNNNNRTG	3 cut(s)	557, 681, 1007
MspA1I	CMGCKG	1 cut(s)	324
MspI	CCGG	6 cut(s)	105, 210, 501, 549, 897, 1042
MspR9I	CCNGG	2 cut(s)	210, 549
MwoI	GCNNNNNNNGC	5 cut(s)	147, 300, 315, 844, 853
NarI	GGCGCC	1 cut(s)	375
NciI	CCSGG	2 cut(s)	210, 549
NcoI	CCATGG	2 cut(s)	732, 1008
NdeII	GATC	2 cut(s)	636, 715
NlaIII	CATG	9 cut(s)	169, 218, 309, 427, 526, 556, 560, 736, 1012
NlaIV	GGNNCC	2 cut(s)	376, 394
NmuCI	GTSAC	4 cut(s)	118, 232, 587, 707
NsiI	ATGCAT	1 cut(s)	558
NspI	RCATGY	2 cut(s)	556, 560
PaeI	GCATGC	1 cut(s)	556
PcsI	WCGNNNNNNNCGW	1 cut(s)	183
PfeI	GAWTC	1 cut(s)	689
PfoI	TCCNGGA	1 cut(s)	208
PinAI	ACCGGT	1 cut(s)	1041
PkrI	GCNGC	4 cut(s)	52, 484, 772, 949
PluTI	GGCGCC	1 cut(s)	378
PmaCI	CACGTG	1 cut(s)	592
PmlI	CACGTG	1 cut(s)	592
Ppu21I	YACGTR	1 cut(s)	592
Psp124BI	GAGCTC	1 cut(s)	858
PspCI	CACGTG	1 cut(s)	592
PspN4I	GGNNCC	2 cut(s)	376, 394
PspPI	GGNCC	1 cut(s)	37
PstI	CTGCAG	1 cut(s)	772
PstNI	CAGNNNCTG	1 cut(s)	767
PvuII	CAGCTG	1 cut(s)	324
RsaI	GTAC	2 cut(s)	363, 643
RsaNI	GTAC	2 cut(s)	362, 642
RseI	CAYNNNNRTG	3 cut(s)	557, 681, 1007
SacI	GAGCTC	1 cut(s)	858
SaqAI	TTAA	7 cut(s)	171, 264, 624, 672, 810, 1070, 1084
SatI	GCNGC	4 cut(s)	51, 483, 771, 948
Sau3AI	GATC	2 cut(s)	636, 715
Sau96I	GGNCC	1 cut(s)	37
ScrFI	CCNGG	2 cut(s)	210, 549
SduI	GDGCHC	2 cut(s)	21, 858
SfaNI	GCATC	2 cut(s)	17, 711
SfcI	CTRYAG	1 cut(s)	768
SfoI	GGCGCC	1 cut(s)	376
SmiMI	CAYNNNNRTG	3 cut(s)	557, 681, 1007
SmlI	CTYRAG	2 cut(s)	91, 851
SmoI	CTYRAG	2 cut(s)	91, 851
SphI	GCATGC	1 cut(s)	556
Sse9I	AATT	2 cut(s)	343, 504
SsiI	CCGC	4 cut(s)	141, 408, 579, 596
SspDI	GGCGCC	1 cut(s)	374
SstI	GAGCTC	1 cut(s)	858
StyD4I	CCNGG	2 cut(s)	208, 547
StyI	CCWWGG	5 cut(s)	40, 574, 609, 732, 1008
TaaI	ACNGT	2 cut(s)	634, 763
TaiI	ACGT	3 cut(s)	120, 125, 594
TaqI	TCGA	4 cut(s)	756, 975, 990, 1053
TasI	AATT	2 cut(s)	343, 504
TatI	WGTACW	1 cut(s)	361
TfiI	GAWTC	1 cut(s)	689
Tru1I	TTAA	7 cut(s)	171, 264, 624, 672, 810, 1070, 1084
Tru9I	TTAA	7 cut(s)	171, 264, 624, 672, 810, 1070, 1084
TscAI	CASTG	2 cut(s)	639, 1009
TseFI	GTSAC	4 cut(s)	118, 232, 587, 707
TseI	GCWGC	4 cut(s)	50, 482, 770, 947
Tsp45I	GTSAC	4 cut(s)	118, 232, 587, 707
TspDTI	ATGAA	1 cut(s)	678
TspGWI	ACGGA	2 cut(s)	405, 440
TspRI	CASTG	2 cut(s)	639, 1009
XceI	RCATGY	2 cut(s)	556, 560
XcmI	CCANNNNNNNNNTGG	1 cut(s)	739
Zsp2I	ATGCAT	1 cut(s)	558

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.