MD05G1177200.v1.1

Protein of unknown function (DUF3685)

Basic Information

Type: gene
Biological Identity
malus_domestica
Chr05
Physical Location & Seq
Reverse (-)
30441159 .. 30445774
4616 bp
Loading structure...
UTR
Exon/CDS
Intron
MD05G1177200.v1.1.491

Sequence Viewer

Length: 1551 bp
ATGGCGGAATGCCTGGCTTCGCCATTATGTATGAAGCTGCAGATGCGGAGAAGTTATGTCAAAGAGGAAGGCTCTGTACCCCGGAGTTCACGTCTGCAGAAAGTGCAAAGGAAGTATTCGTATGGAAGGTGCAAGACAGTTCCATTTCCGACCTGGAGAATGTGTGAGTTCACTGCTCATGGCATTTCAAATGTGAAAGTTGGTCCTTTTTCTGAGGCTTCCTCGAAATGTGCTTGCTTGGGGTCTTTGGTAGGCTCTGATGGTGCAGTAGCCTCTGATTGGGTACCTATTGCTGATCAAGTGCTTCTGACAGCCAGTGTATTTCTCACATATATGGCTGGAGTAATTCCTGGTCGGACCTCTAGTCCAACTTTTCGAAAGGACATCTCCAATGACAATGTGGGCTGTGAAACCTCAACCGCTTCTGGTAGTGGAAGAAAGAATGATAATCCAGAAAATTCAGGTTATGCCTTGGATGCAGTGAAAAGGAAACTTTCAGATTCACTCCAAGCTTTTGAACTTGGGGGTAATTTGGGAGACAGGGTCCTTCAACGTGATGGATACACTGCAAAGCGACCCTTAAGTTTGAATGCTGTTGCTGATGGTCCAAGATTAAGATTGCTCTGGGCATCATTTCTGCGAATTGAGGAAGAGGTGATTAATATCTCAAATTCTGGAATTTATAAATTGGATGAGTGCTTGACGGATTTTTCTGATGTTATACGAAAGTCGTGTCAGCCTGTTTGCATGAGCTGGTTAGAAACAGAACTTCATCTTTTAAACAGCAAGCCTACCAAGGCACTTGTTACGCTGATGGATGGAAAGTTAGATGGAGACAATACTGTTTTACAGAACATCAGGAACTCAGGCAAGGAAGACCTTTATGCAGAACTAATGTGCTTTCTAAGCTTCGGTTCTCTCAGGGAGGGATGCTGTTATGACGGTAGTCTGTTTAAGAAACACGGAGTTTCCATACTGGAAGATTTGGTGATAAGTTTAGCAGACGGGATAGTAAGCATATATTTGGAGCTTATTTCTGTTGACAGCAATTTCTCAGATGAAATGGATAACCTGCCTTTGACATTGTGTACATTGTCAACGCGAGCACTCCAAAGATTACGAAATGAGGTAGCTTTGTACCAATGGTTGTATCAAAATTTGGAGGCAGTTGCATCAATGTATGAGGATCGATTTGATTTATGGACATTTCAGAGCCAACTCATCGAGGAGTCAAACAATAGCTGGACTGAGAATTATAAGTGGTGGAAGTGGCTTAGCTGGAAAAAATATGACACTGCGTCATCAACATTACATCAGGTTGTGATAAGTCAATTCTCTATGCCTGTAAAGCGAACAAAAGAATTAAGGGCCCTTACGGGGTGGAGGTATTACTTCAGCCTATTCCTTGAGTTATACGACATCAGCATGCCTTTGATTAGAGCAGTTGTAGACAACGTCAGTAGGGGTCTCTCGTTTTTTCTAAAATGCTTGATTGGAAGGTCATTAGGACTCATCTACACCGGAATTAGACAGTCTCTACGATGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

517

Amino Acids

58.2

Weight (kDa)

8.07

Isoelectric Point (pI)

49.46

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3685 PF12452 323 - 411 2.2e-06 Protein of unknown function (DUF3685)
DUF3685 PF12452 436 - 511 1e-11 Protein of unknown function (DUF3685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
AanI TTATAA 2 cut(s) 684, 1257
Acc36I ACCTGC 1 cut(s) 1080
Acc65I GGTACC 1 cut(s) 283
AccB1I GGYRCC 1 cut(s) 283
AccI GTMKAC 1 cut(s) 1449
AccII CGCG 1 cut(s) 1102
AciI CCGC 3 cut(s) 5, 46, 420
AclWI GGATC 1 cut(s) 1194
AcsI RAATTY 4 cut(s) 457, 670, 678, 1156
AcuI CTGAAG 1 cut(s) 1378
AfaI GTAC 4 cut(s) 78, 285, 1090, 1139
AfiI CCNNNNNNNGG 2 cut(s) 279, 1377
AflII CTTAAG 1 cut(s) 580
AgsI TTSAA 4 cut(s) 189, 518, 551, 589
AhdI GACNNNNNGTC 2 cut(s) 363, 1297
AjiI CACGTC 1 cut(s) 92
AjnI CCWGG 3 cut(s) 12, 152, 349
AluBI AGCT 8 cut(s) 37, 512, 753, 909, 1030, 1133, 1242, 1278
AluI AGCT 8 cut(s) 37, 512, 753, 909, 1030, 1133, 1242, 1278
Alw21I GWGCWC 1 cut(s) 1108
Alw26I GTCTC 4 cut(s) 531, 828, 1472, 1539
AlwI GGATC 1 cut(s) 1194
AoxI GGCC 1 cut(s) 1368
ApaI GGGCCC 1 cut(s) 1372
ApeKI GCWGC 1 cut(s) 37
ApoI RAATTY 4 cut(s) 457, 670, 678, 1156
ArsI GACNNNNNNTTYG 2 cut(s) 718, 750
AseI ATTAAT 1 cut(s) 660
Asp718I GGTACC 1 cut(s) 283
AspS9I GGNCC 6 cut(s) 203, 357, 544, 605, 1368, 1369
AsuC2I CCSGG 1 cut(s) 82
AsuHPI GGTGA 2 cut(s) 667, 1000
AsuII TTCGAA 1 cut(s) 376
AvaII GGWCC 4 cut(s) 203, 357, 544, 605
BaeGI GKGCMC 1 cut(s) 1372
BanI GGYRCC 1 cut(s) 283
BanII GRGCYC 1 cut(s) 1372
BarI GAAGNNNNNNTAC 2 cut(s) 60, 92
BbsI GAAGAC 1 cut(s) 882
Bbv12I GWGCWC 1 cut(s) 1108
BbvI GCAGC 1 cut(s) 24
BccI CCATC 7 cut(s) 254, 551, 596, 808, 812, 824, 1536
BciT130I CCWGG 3 cut(s) 14, 154, 351
BciVI GTATCC 1 cut(s) 554
BclI TGATCA 1 cut(s) 295
BcnI CCSGG 1 cut(s) 82
BcoDI GTCTC 4 cut(s) 531, 828, 1472, 1539
BfaI CTAG 1 cut(s) 363
BfmI CTRYAG 2 cut(s) 38, 95
BfrI CTTAAG 1 cut(s) 580
BfuAI ACCTGC 1 cut(s) 1080
BfuI GTATCC 1 cut(s) 554
BisI GCNGC 1 cut(s) 38
BlpI GCTNAGC 1 cut(s) 1274
BlsI GCNGC 1 cut(s) 39
Bme1390I CCNGG 4 cut(s) 14, 82, 154, 351
Bme18I GGWCC 4 cut(s) 203, 357, 544, 605
BmeRI GACNNNNNGTC 2 cut(s) 363, 1297
BmgBI CACGTC 1 cut(s) 92
BmgT120I GGNCC 6 cut(s) 203, 357, 544, 605, 1368, 1369
BmiI GGNNCC 3 cut(s) 285, 545, 1370
BmrFI CCNGG 4 cut(s) 14, 82, 154, 351
BmsI GCATC 5 cut(s) 33, 466, 638, 920, 1181
BoxI GACNNNNGTC 1 cut(s) 945
BpiI GAAGAC 1 cut(s) 882
BplI GAGNNNNNCTC 4 cut(s) 56, 88, 206, 238
BpmI CTGGAG 2 cut(s) 175, 360
Bpu1102I GCTNAGC 1 cut(s) 1274
Bpu14I TTCGAA 1 cut(s) 376
BpuEI CTTGAG 1 cut(s) 1427
BpuMI CCSGG 1 cut(s) 82
Bsa29I ATCGAT 1 cut(s) 1189
BsaBI GATNNNNATC 1 cut(s) 662
BsaI GGTCTC 1 cut(s) 1472
BsaJI CCNNGG 3 cut(s) 80, 471, 795
BsaWI WCCGGW 1 cut(s) 1520
BsaXI ACNNNNNCTCC 6 cut(s) 76, 106, 148, 178, 528, 558
Bsc4I CCNNNNNNNGG 2 cut(s) 279, 1377
Bse1I ACTGG 2 cut(s) 315, 981
Bse8I GATNNNNATC 1 cut(s) 662
BseBI CCWGG 3 cut(s) 14, 154, 351
BseCI ATCGAT 1 cut(s) 1189
BseDI CCNNGG 3 cut(s) 80, 471, 795
BseGI GGATG 4 cut(s) 481, 697, 823, 935
BseJI GATNNNNATC 1 cut(s) 662
BseLI CCNNNNNNNGG 2 cut(s) 279, 1377
BseMII CTCAG 5 cut(s) 204, 879, 934, 1068, 1239
BseNI ACTGG 2 cut(s) 315, 981
BseRI GAGGAG 1 cut(s) 1241
BseSI GKGCMC 1 cut(s) 1372
BseXI GCAGC 1 cut(s) 24
BsgI GTGCAG 1 cut(s) 285
Bsh1236I CGCG 1 cut(s) 1102
BshFI GGCC 1 cut(s) 1370
BshNI GGYRCC 1 cut(s) 283
BshVI ATCGAT 1 cut(s) 1189
BsiHKAI GWGCWC 1 cut(s) 1108
BsiSI CCGG 2 cut(s) 82, 1521
BslI CCNNNNNNNGG 2 cut(s) 279, 1377
BsmAI GTCTC 4 cut(s) 531, 828, 1472, 1539
BsmI GAATGC 2 cut(s) 14, 595
BsnI GGCC 1 cut(s) 1370
Bso31I GGTCTC 1 cut(s) 1472
Bsp119I TTCGAA 1 cut(s) 376
Bsp120I GGGCCC 1 cut(s) 1368
Bsp1286I GDGCHC 2 cut(s) 1108, 1372
Bsp1407I TGTACA 1 cut(s) 1088
Bsp143I GATC 2 cut(s) 295, 1186
Bsp1720I GCTNAGC 1 cut(s) 1274
BspACI CCGC 3 cut(s) 5, 46, 420
BspANI GGCC 1 cut(s) 1370
BspCNI CTCAG 5 cut(s) 205, 878, 933, 1067, 1240
BspDI ATCGAT 1 cut(s) 1189
BspFNI CGCG 1 cut(s) 1102
BspLI GGNNCC 3 cut(s) 285, 545, 1370
BspMAI CTGCAG 2 cut(s) 42, 99
BspMI ACCTGC 1 cut(s) 1080
BspPI GGATC 1 cut(s) 1194
BspT104I TTCGAA 1 cut(s) 376
BspT107I GGYRCC 1 cut(s) 283
BspTI CTTAAG 1 cut(s) 580
BspTNI GGTCTC 1 cut(s) 1472
BsrGI TGTACA 1 cut(s) 1088
BsrI ACTGG 2 cut(s) 315, 981
BssECI CCNNGG 3 cut(s) 80, 471, 795
BssMI GATC 2 cut(s) 295, 1186
BssT1I CCWWGG 2 cut(s) 471, 795
Bst2UI CCWGG 3 cut(s) 14, 154, 351
Bst4CI ACNGT 4 cut(s) 139, 844, 944, 1533
Bst6I CTCTTC 1 cut(s) 645
BstAFI CTTAAG 1 cut(s) 580
BstAPI GCANNNNNTGC 1 cut(s) 103
BstAUI TGTACA 1 cut(s) 1088
BstBI TTCGAA 1 cut(s) 376
BstC8I GCNNGC 4 cut(s) 235, 788, 1104, 1427
BstDEI CTNAG 7 cut(s) 213, 865, 905, 920, 1054, 1248, 1274
BstF5I GGATG 4 cut(s) 481, 697, 823, 935
BstFNI CGCG 1 cut(s) 1102
BstKTI GATC 2 cut(s) 298, 1189
BstMAI GTCTC 4 cut(s) 531, 828, 1472, 1539
BstMBI GATC 2 cut(s) 295, 1186
BstMWI GCNNNNNNNGC 5 cut(s) 43, 103, 476, 906, 1348
BstNI CCWGG 3 cut(s) 14, 154, 351
BstNSI RCATGY 1 cut(s) 1429
BstPAI GACNNNNGTC 1 cut(s) 945
BstSCI CCNGG 4 cut(s) 12, 80, 152, 349
BstSFI CTRYAG 2 cut(s) 38, 95
BstSLI GKGCMC 1 cut(s) 1372
BstUI CGCG 1 cut(s) 1102
BstV1I GCAGC 1 cut(s) 24
BstV2I GAAGAC 1 cut(s) 882
Bsu15I ATCGAT 1 cut(s) 1189
BsuI GTATCC 1 cut(s) 554
BsuRI GGCC 1 cut(s) 1370
BsuTUI ATCGAT 1 cut(s) 1189
BtrI CACGTC 1 cut(s) 92
BtsCI GGATG 4 cut(s) 481, 697, 823, 935
BtsI GCAGTG 4 cut(s) 171, 486, 564, 1293
BtsIMutI CAGTG 5 cut(s) 171, 322, 486, 564, 1293
BveI ACCTGC 1 cut(s) 1080
Cac8I GCNNGC 4 cut(s) 235, 788, 1104, 1427
Cfr13I GGNCC 6 cut(s) 203, 357, 544, 605, 1368, 1369
ClaI ATCGAT 1 cut(s) 1189
CseI GACGC 1 cut(s) 1287
Csp6I GTAC 4 cut(s) 77, 284, 1089, 1138
CviAII CATG 3 cut(s) 179, 748, 1426
CviQI GTAC 4 cut(s) 77, 284, 1089, 1138
DdeI CTNAG 7 cut(s) 213, 865, 905, 920, 1054, 1248, 1274
DpnI GATC 2 cut(s) 297, 1188
DpnII GATC 2 cut(s) 295, 1186
DraI TTTAAA 1 cut(s) 780
DriI GACNNNNNGTC 2 cut(s) 363, 1297
Eam1104I CTCTTC 1 cut(s) 645
Eam1105I GACNNNNNGTC 2 cut(s) 363, 1297
EarI CTCTTC 1 cut(s) 645
EciI GGCGGA 1 cut(s) 20
Eco130I CCWWGG 2 cut(s) 471, 795
Eco24I GRGCYC 1 cut(s) 1372
Eco31I GGTCTC 1 cut(s) 1472
Eco47I GGWCC 4 cut(s) 203, 357, 544, 605
Eco57I CTGAAG 1 cut(s) 1378
EcoO109I RGGNCCY 3 cut(s) 544, 1368, 1369
EcoRII CCWGG 3 cut(s) 12, 152, 349
EcoT14I CCWWGG 2 cut(s) 471, 795
EcoT38I GRGCYC 1 cut(s) 1372
ErhI CCWWGG 2 cut(s) 471, 795
FaeI CATG 3 cut(s) 182, 751, 1429
FalI AAGNNNNNCTT 2 cut(s) 563, 595
FatI CATG 3 cut(s) 178, 747, 1425
FbaI TGATCA 1 cut(s) 295
FblI GTMKAC 1 cut(s) 1449
Fnu4HI GCNGC 1 cut(s) 38
FokI GGATG 4 cut(s) 488, 704, 830, 942
FriOI GRGCYC 1 cut(s) 1372
Fsp4HI GCNGC 1 cut(s) 38
FspBI CTAG 1 cut(s) 363
GluI GCNGC 1 cut(s) 38
GsuI CTGGAG 2 cut(s) 175, 360
HaeIII GGCC 1 cut(s) 1370
HapII CCGG 2 cut(s) 82, 1521
HgaI GACGC 1 cut(s) 1287
Hin1II CATG 3 cut(s) 182, 751, 1429
HincII GTYRAC 2 cut(s) 1042, 1098
HindII GTYRAC 2 cut(s) 1042, 1098
HindIII AAGCTT 2 cut(s) 510, 907
HinfI GANTC 3 cut(s) 500, 1229, 1509
HpaII CCGG 2 cut(s) 82, 1521
HphI GGTGA 2 cut(s) 667, 1000
Hpy166II GTNNAC 6 cut(s) 89, 171, 1042, 1089, 1098, 1450
Hpy188III TCNNGA 3 cut(s) 452, 675, 859
Hpy8I GTNNAC 6 cut(s) 89, 171, 1042, 1089, 1098, 1450
HpyAV CCTTC 4 cut(s) 62, 120, 557, 1491
HpyCH4III ACNGT 4 cut(s) 139, 844, 944, 1533
HpyCH4IV ACGT 3 cut(s) 91, 553, 1455
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 103, 476, 906, 1348
HpyF3I CTNAG 7 cut(s) 213, 865, 905, 920, 1054, 1248, 1274
HpySE526I ACGT 3 cut(s) 91, 553, 1455
Hsp92II CATG 3 cut(s) 182, 751, 1429
KpnI GGTACC 1 cut(s) 287
Ksp22I TGATCA 1 cut(s) 295
Kzo9I GATC 2 cut(s) 295, 1186
LmnI GCTCC 1 cut(s) 1027
Lsp1109I GCAGC 1 cut(s) 24
LweI GCATC 5 cut(s) 33, 466, 638, 920, 1181
MaeI CTAG 1 cut(s) 363
MaeII ACGT 3 cut(s) 91, 553, 1455
MaeIII GTNAC 1 cut(s) 805
MalI GATC 2 cut(s) 297, 1188
MboI GATC 2 cut(s) 295, 1186
MboII GAAGA 4 cut(s) 447, 662, 887, 992
MhlI GDGCHC 2 cut(s) 1108, 1372
MlyI GAGTC 2 cut(s) 1238, 1503
MmeI TCCRAC 3 cut(s) 173, 335, 392
MseI TTAA 6 cut(s) 581, 614, 660, 779, 954, 1364
MslI CAYNNNNRTG 2 cut(s) 332, 1424
MspCI CTTAAG 1 cut(s) 580
MspI CCGG 2 cut(s) 82, 1521
MspR9I CCNGG 4 cut(s) 14, 82, 154, 351
Mva1269I GAATGC 2 cut(s) 14, 595
MvaI CCWGG 3 cut(s) 14, 154, 351
MvnI CGCG 1 cut(s) 1102
MwoI GCNNNNNNNGC 5 cut(s) 43, 103, 476, 906, 1348
NciI CCSGG 1 cut(s) 82
NdeII GATC 2 cut(s) 295, 1186
NlaIII CATG 3 cut(s) 182, 751, 1429
NlaIV GGNNCC 3 cut(s) 285, 545, 1370
NspI RCATGY 1 cut(s) 1429
NspV TTCGAA 1 cut(s) 376
PaeI GCATGC 1 cut(s) 1429
PctI GAATGC 2 cut(s) 14, 595
PfeI GAWTC 1 cut(s) 500
PflFI GACNNNGTC 2 cut(s) 542, 1454
PkrI GCNGC 1 cut(s) 39
PleI GAGTC 2 cut(s) 1237, 1503
PpsI GAGTC 2 cut(s) 1237, 1503
PpuMI RGGWCCY 1 cut(s) 544
PshAI GACNNNNGTC 1 cut(s) 945
PshBI ATTAAT 1 cut(s) 660
PsiI TTATAA 2 cut(s) 684, 1257
Psp5II RGGWCCY 1 cut(s) 544
Psp6I CCWGG 3 cut(s) 12, 152, 349
PspGI CCWGG 3 cut(s) 12, 152, 349
PspN4I GGNNCC 3 cut(s) 285, 545, 1370
PspOMI GGGCCC 1 cut(s) 1368
PspPI GGNCC 6 cut(s) 203, 357, 544, 605, 1368, 1369
PspPPI RGGWCCY 1 cut(s) 544
PstI CTGCAG 2 cut(s) 42, 99
PsyI GACNNNGTC 2 cut(s) 542, 1454
RsaI GTAC 4 cut(s) 78, 285, 1090, 1139
RsaNI GTAC 4 cut(s) 77, 284, 1089, 1138
RseI CAYNNNNRTG 2 cut(s) 332, 1424
SaqAI TTAA 6 cut(s) 581, 614, 660, 779, 954, 1364
SatI GCNGC 1 cut(s) 38
Sau3AI GATC 2 cut(s) 295, 1186
Sau96I GGNCC 6 cut(s) 203, 357, 544, 605, 1368, 1369
SchI GAGTC 2 cut(s) 1238, 1503
ScrFI CCNGG 4 cut(s) 14, 82, 154, 351
SduI GDGCHC 2 cut(s) 1108, 1372
SfaNI GCATC 5 cut(s) 33, 466, 638, 920, 1181
SfcI CTRYAG 2 cut(s) 38, 95
SfuI TTCGAA 1 cut(s) 376
SinI GGWCC 4 cut(s) 203, 357, 544, 605
SmiMI CAYNNNNRTG 2 cut(s) 332, 1424
SmlI CTYRAG 2 cut(s) 580, 1406
SmoI CTYRAG 2 cut(s) 580, 1406
SphI GCATGC 1 cut(s) 1429
SsiI CCGC 3 cut(s) 5, 46, 420
SspMI CTAG 1 cut(s) 363
StyD4I CCNGG 4 cut(s) 12, 80, 152, 349
StyI CCWWGG 2 cut(s) 471, 795
TaaI ACNGT 4 cut(s) 139, 844, 944, 1533
TaiI ACGT 3 cut(s) 94, 556, 1458
TaqI TCGA 4 cut(s) 224, 376, 1189, 1224
TatI WGTACW 1 cut(s) 1088
TfiI GAWTC 1 cut(s) 500
Tru1I TTAA 6 cut(s) 581, 614, 660, 779, 954, 1364
Tru9I TTAA 6 cut(s) 581, 614, 660, 779, 954, 1364
TscAI CASTG 5 cut(s) 178, 322, 486, 571, 1300
TseI GCWGC 1 cut(s) 37
TspDTI ATGAA 3 cut(s) 47, 761, 1074
TspGWI ACGGA 2 cut(s) 719, 978
TspRI CASTG 5 cut(s) 178, 322, 486, 571, 1300
Tth111I GACNNNGTC 2 cut(s) 542, 1454
Vha464I CTTAAG 1 cut(s) 580
VpaK11BI GGWCC 4 cut(s) 203, 357, 544, 605
VspI ATTAAT 1 cut(s) 660
XapI RAATTY 4 cut(s) 457, 670, 678, 1156
XceI RCATGY 1 cut(s) 1429
XcmI CCANNNNNNNNNTGG 2 cut(s) 150, 397
XmiI GTMKAC 1 cut(s) 1449
XspI CTAG 1 cut(s) 363
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.