Basic Information

Type: gene

Biological Identity

Species

rosa_multiflora

Chromosome

Rmu_sc0006185.1

Orthogroup ID

OG0003845

Physical Location & Seq

Genomic Coordinates Reverse (-)

74264 .. 80737

Gene Structure 6474 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

Rmu_sc0006185.1_g000014.1.cds

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1473 bp

atgttgtgtgtagaatgtgctgattgtggggtgagaagttttcatgctaatggcagaatgtgtggtatcaccactaccactatgtatgaagctgcaaatgcagaggagtttcgccacagggaagccccggagttcacattcgaagatcttgcaaaggaagcattcctatggaagttgcaaaactgttctggctctgatggtgcaacggcctctgattggattcctcttgttgatcaactactcctgacggctagtgtgtttctcacatatatggctggagtaattcctggttacaactctagtccaccttctcagaatgacaacgcggttcctaagacctcaaacgcttctggtagtgctacaaagaacaatgatccagattcaggttatgccgtggatgcagtgaaaaagaaacttctagattctcttgaagctcttgaactaggaggcaatctgggaaatagggtccttgaacctgaagggtattatgcaaagagacccttaagtttaaatgctattgctaatggtccgcgactacgattgctatgggcatcattgcagcgaattgaggaagaggtcaaaactatctccaattctcaaacttttaactcggattattgcttgaagaatttttctggtattatacaaaaatcctgtctccctgtatgcacgagttggctagaaacagaacttggacttttaaacagcagacctaacaaggcacttgttttgctgatggatgcaaagttaaatggagacaacgctattttacagaacatcaggaattctggcaaggaagatctttatgcagaattgctgtgttttcttagttttggttctctcagggagggttgctcttatgaaagtggcctgtttatgatgcatgcagtttccatactggaagatttggtgataactttgtcagatgggatagtaagcatatatttggagcttatttctgttgacagcaatttctcagatgaaatggatggcttatctttggcattgtgtactttgtcaacacgagcactacaaagattacgtaatgaggtggctttgtaccaatggttgtatcaaaatttggaagcagttgcatcaatgtatgaggatcgatttgacttatggacatttgagagtcaactcatagagaaagtagacaatagctggaatcaaaagtacagttggtggaagagacttatccataaaaaatctgacactgcatcatcaacattagaccgtgttttgataagtaacttttctatgcctgtaaagcgaacgaaggaattgagagcccttacaggctggaggtactacttcagtctattcctcgagttatctgacattagcatgccattggtcagagcagtcattgataaagtcagcaaggctatgtcattttttctagtctgcttgattgggaggtcattaggactcatttatactggaattaggcagtctctgcgatggaagtga

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3685

Protein Analysis

490

Amino Acids

54.95

Weight (kDa)

5.34

Isoelectric Point (pI)

46.06

Instability Index

Protein Domains (Pfam)

No Pfam domains detected for this protein.

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0003845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48830 AT5G48830
fragaria_vesca	FvH4_2g19230 FvH4_2g19230 FvH4_2g19230 FvH4_2g19230 FvH4_2g19230
malus_domestica	MD05G1177200.v1.1
prunus_persica	Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1
pyrus_communis	pycom05g16320
rosa_chinensis	RchiOBHm_Chr6g0285011
rosa_laevigata	RLG00000012689
rosa_multiflora	Rmu_sc0006185.1_g000014
rosa_roxburghii	Rroxscaffold_7G00183840 Rroxscaffold_7G00184120
rosa_rugosa	Rorug06G0169500 Rorug06G0169600 Rorug06G0169700 Rorug06G0169800
rosa_samantha	Rh6AG281700 Rh6BG282300 Rh6CG284000 Rh6DG277100
rosa_wichuraiana	Rw6G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AccI	GTMKAC	1 cut(s)	1155
AccII	CGCG	2 cut(s)	326, 532
AciI	CCGC	2 cut(s)	326, 530
AclWI	GGATC	2 cut(s)	368, 1116
AcsI	RAATTY	3 cut(s)	628, 784, 1078
AcuI	CTGAAG	2 cut(s)	498, 1300
AfaI	GTAC	4 cut(s)	1012, 1061, 1178, 1310
AfiI	CCNNNNNNNGG	2 cut(s)	216, 383
AflII	CTTAAG	1 cut(s)	502
AgsI	TTSAA	4 cut(s)	431, 440, 473, 625
AjnI	CCWGG	1 cut(s)	286
AjuI	GAANNNNNNNTTGG	2 cut(s)	675, 707
AluBI	AGCT	4 cut(s)	92, 434, 952, 1164
AluI	AGCT	4 cut(s)	92, 434, 952, 1164
Alw21I	GWGCWC	1 cut(s)	1030
Alw26I	GTCTC	5 cut(s)	490, 662, 750, 1186, 1461
AlwI	GGATC	2 cut(s)	368, 1116
AlwNI	CAGNNNCTG	1 cut(s)	1459
Ama87I	CYCGRG	1 cut(s)	1328
AoxI	GGCC	2 cut(s)	207, 868
ApeKI	GCWGC	2 cut(s)	92, 559
ApoI	RAATTY	3 cut(s)	628, 784, 1078
ArsI	GACNNNNNNTTYG	2 cut(s)	640, 672
AspS9I	GGNCC	2 cut(s)	466, 527
AsuC2I	CCSGG	1 cut(s)	128
AsuHPI	GGTGA	3 cut(s)	43, 61, 922
AsuII	TTCGAA	1 cut(s)	141
AvaI	CYCGRG	1 cut(s)	1328
AvaII	GGWCC	2 cut(s)	466, 527
BanII	GRGCYC	1 cut(s)	1294
BauI	CACGAG	2 cut(s)	670, 1023
Bbv12I	GWGCWC	1 cut(s)	1030
BbvI	GCAGC	2 cut(s)	79, 571
BccI	CCATC	5 cut(s)	191, 730, 920, 983, 1458
BceAI	ACGGC	3 cut(s)	222, 264, 377
BcgI	CGANNNNNNTGC	2 cut(s)	131, 165
BciT130I	CCWGG	1 cut(s)	288
BclI	TGATCA	1 cut(s)	232
BcnI	CCSGG	1 cut(s)	128
BcoDI	GTCTC	5 cut(s)	490, 662, 750, 1186, 1461
BfaI	CTAG	6 cut(s)	252, 300, 419, 443, 680, 1403
BfrI	CTTAAG	1 cut(s)	502
BglII	AGATCT	2 cut(s)	145, 799
BisI	GCNGC	2 cut(s)	93, 560
BlsI	GCNGC	2 cut(s)	94, 561
Bme1390I	CCNGG	2 cut(s)	128, 288
Bme18I	GGWCC	2 cut(s)	466, 527
BmeT110I	CYCGRG	1 cut(s)	1328
BmgT120I	GGNCC	2 cut(s)	466, 527
BmiI	GGNNCC	2 cut(s)	330, 467
BmrFI	CCNGG	2 cut(s)	128, 288
BmsI	GCATC	6 cut(s)	388, 560, 730, 870, 1103, 1229
BplI	GAGNNNNNCTC	2 cut(s)	839, 871
BpmI	CTGGAG	2 cut(s)	297, 1324
Bpu14I	TTCGAA	1 cut(s)	141
BpuMI	CCSGG	1 cut(s)	128
Bsa29I	ATCGAT	1 cut(s)	1111
BsaAI	YACGTR	1 cut(s)	1043
BsaI	GGTCTC	1 cut(s)	490
BsaJI	CCNNGG	2 cut(s)	126, 393
Bsc4I	CCNNNNNNNGG	2 cut(s)	216, 383
Bse1I	ACTGG	2 cut(s)	903, 1447
Bse3DI	GCAATG	1 cut(s)	554
BseBI	CCWGG	1 cut(s)	288
BseCI	ATCGAT	1 cut(s)	1111
BseDI	CCNNGG	2 cut(s)	126, 393
BseGI	GGATG	3 cut(s)	403, 745, 994
BseLI	CCNNNNNNNGG	2 cut(s)	216, 383
BseMI	GCAATG	1 cut(s)	554
BseMII	CTCAG	3 cut(s)	326, 856, 990
BseNI	ACTGG	2 cut(s)	903, 1447
BseRI	GAGGAG	1 cut(s)	119
BseXI	GCAGC	2 cut(s)	79, 571
Bsh1236I	CGCG	2 cut(s)	326, 532
BshFI	GGCC	2 cut(s)	209, 870
BshVI	ATCGAT	1 cut(s)	1111
BsiHKAI	GWGCWC	1 cut(s)	1030
BsiHKCI	CYCGRG	1 cut(s)	1328
BsiSI	CCGG	1 cut(s)	128
BslI	CCNNNNNNNGG	2 cut(s)	216, 383
BsmAI	GTCTC	5 cut(s)	490, 662, 750, 1186, 1461
BsmI	GAATGC	1 cut(s)	161
BsnI	GGCC	2 cut(s)	209, 870
Bso31I	GGTCTC	1 cut(s)	490
BsoBI	CYCGRG	1 cut(s)	1328
Bsp119I	TTCGAA	1 cut(s)	141
Bsp1286I	GDGCHC	2 cut(s)	1030, 1294
Bsp143I	GATC	5 cut(s)	145, 232, 373, 799, 1108
BspACI	CCGC	2 cut(s)	326, 530
BspANI	GGCC	2 cut(s)	209, 870
BspCNI	CTCAG	3 cut(s)	325, 855, 989
BspDI	ATCGAT	1 cut(s)	1111
BspFNI	CGCG	2 cut(s)	326, 532
BspLI	GGNNCC	2 cut(s)	330, 467
BspPI	GGATC	2 cut(s)	368, 1116
BspT104I	TTCGAA	1 cut(s)	141
BspTI	CTTAAG	1 cut(s)	502
BspTNI	GGTCTC	1 cut(s)	490
BsrDI	GCAATG	1 cut(s)	554
BsrI	ACTGG	2 cut(s)	903, 1447
BssECI	CCNNGG	2 cut(s)	126, 393
BssMI	GATC	5 cut(s)	145, 232, 373, 799, 1108
BssSI	CACGAG	2 cut(s)	670, 1023
Bst2BI	CACGAG	2 cut(s)	670, 1023
Bst2UI	CCWGG	1 cut(s)	288
Bst4CI	ACNGT	3 cut(s)	185, 1181, 1238
Bst6I	CTCTTC	2 cut(s)	567, 1184
BstAFI	CTTAAG	1 cut(s)	502
BstAPI	GCANNNNNTGC	1 cut(s)	1459
BstBAI	YACGTR	1 cut(s)	1043
BstBI	TTCGAA	1 cut(s)	141
BstC8I	GCNNGC	2 cut(s)	885, 1349
BstDEI	CTNAG	5 cut(s)	312, 333, 827, 842, 976
BstDSI	CCRYGG	1 cut(s)	393
BstF5I	GGATG	3 cut(s)	403, 745, 994
BstFNI	CGCG	2 cut(s)	326, 532
BstKTI	GATC	5 cut(s)	148, 235, 376, 802, 1111
BstMAI	GTCTC	5 cut(s)	490, 662, 750, 1186, 1461
BstMBI	GATC	5 cut(s)	145, 232, 373, 799, 1108
BstMWI	GCNNNNNNNGC	5 cut(s)	98, 158, 398, 1270, 1459
BstNI	CCWGG	1 cut(s)	288
BstNSI	RCATGY	2 cut(s)	887, 1351
BstSCI	CCNGG	2 cut(s)	126, 286
BstSNI	TACGTA	1 cut(s)	1043
BstUI	CGCG	2 cut(s)	326, 532
BstV1I	GCAGC	2 cut(s)	79, 571
BstX2I	RGATCY	2 cut(s)	145, 799
BstYI	RGATCY	2 cut(s)	145, 799
Bsu15I	ATCGAT	1 cut(s)	1111
BsuRI	GGCC	2 cut(s)	209, 870
BsuTUI	ATCGAT	1 cut(s)	1111
BtgI	CCRYGG	1 cut(s)	393
BtsCI	GGATG	3 cut(s)	403, 745, 994
BtsI	GCAGTG	2 cut(s)	408, 1215
BtsIMutI	CAGTG	2 cut(s)	408, 1215
Cac8I	GCNNGC	2 cut(s)	885, 1349
CaiI	CAGNNNCTG	1 cut(s)	1459
Cfr13I	GGNCC	2 cut(s)	466, 527
ClaI	ATCGAT	1 cut(s)	1111
Csp6I	GTAC	4 cut(s)	1011, 1060, 1177, 1309
CviAII	CATG	3 cut(s)	44, 884, 1348
CviQI	GTAC	4 cut(s)	1011, 1060, 1177, 1309
DdeI	CTNAG	5 cut(s)	312, 333, 827, 842, 976
DpnI	GATC	5 cut(s)	147, 234, 375, 801, 1110
DpnII	GATC	5 cut(s)	145, 232, 373, 799, 1108
DraI	TTTAAA	2 cut(s)	510, 702
Eam1104I	CTCTTC	2 cut(s)	567, 1184
EarI	CTCTTC	2 cut(s)	567, 1184
Eco105I	TACGTA	1 cut(s)	1043
Eco24I	GRGCYC	1 cut(s)	1294
Eco31I	GGTCTC	1 cut(s)	490
Eco47I	GGWCC	2 cut(s)	466, 527
Eco57I	CTGAAG	2 cut(s)	498, 1300
Eco88I	CYCGRG	1 cut(s)	1328
EcoO109I	RGGNCCY	1 cut(s)	466
EcoRI	GAATTC	1 cut(s)	784
EcoRII	CCWGG	1 cut(s)	286
EcoT22I	ATGCAT	1 cut(s)	885
EcoT38I	GRGCYC	1 cut(s)	1294
FaeI	CATG	3 cut(s)	47, 887, 1351
FalI	AAGNNNNNCTT	2 cut(s)	485, 517
FatI	CATG	3 cut(s)	43, 883, 1347
FbaI	TGATCA	1 cut(s)	232
FblI	GTMKAC	1 cut(s)	1155
Fnu4HI	GCNGC	2 cut(s)	93, 560
FokI	GGATG	3 cut(s)	410, 752, 1001
FriOI	GRGCYC	1 cut(s)	1294
Fsp4HI	GCNGC	2 cut(s)	93, 560
FspBI	CTAG	6 cut(s)	252, 300, 419, 443, 680, 1403
GluI	GCNGC	2 cut(s)	93, 560
GsuI	CTGGAG	2 cut(s)	297, 1324
HaeIII	GGCC	2 cut(s)	209, 870
HapII	CCGG	1 cut(s)	128
Hin1II	CATG	3 cut(s)	47, 887, 1351
HincII	GTYRAC	3 cut(s)	964, 1020, 1139
HindII	GTYRAC	3 cut(s)	964, 1020, 1139
HinfI	GANTC	6 cut(s)	220, 380, 422, 1135, 1168, 1431
HpaII	CCGG	1 cut(s)	128
HphI	GGTGA	3 cut(s)	43, 61, 922
Hpy166II	GTNNAC	7 cut(s)	135, 305, 964, 1011, 1020, 1139, 1156
Hpy188I	TCNGA	9 cut(s)	196, 214, 315, 613, 925, 979, 1213, 1339, 1361
Hpy188III	TCNNGA	6 cut(s)	244, 377, 419, 428, 437, 781
Hpy8I	GTNNAC	7 cut(s)	135, 305, 964, 1011, 1020, 1139, 1156
HpyAV	CCTTC	3 cut(s)	318, 473, 1273
HpyCH4III	ACNGT	3 cut(s)	185, 1181, 1238
HpyCH4IV	ACGT	1 cut(s)	1042
HpyF10VI	GCNNNNNNNGC	5 cut(s)	98, 158, 398, 1270, 1459
HpyF3I	CTNAG	5 cut(s)	312, 333, 827, 842, 976
HpySE526I	ACGT	1 cut(s)	1042
Hsp92II	CATG	3 cut(s)	47, 887, 1351
Ksp22I	TGATCA	1 cut(s)	232
Kzo9I	GATC	5 cut(s)	145, 232, 373, 799, 1108
LmnI	GCTCC	1 cut(s)	949
Lsp1109I	GCAGC	2 cut(s)	79, 571
LweI	GCATC	6 cut(s)	388, 560, 730, 870, 1103, 1229
MaeI	CTAG	6 cut(s)	252, 300, 419, 443, 680, 1403
MaeII	ACGT	1 cut(s)	1042
MaeIII	GTNAC	2 cut(s)	290, 1250
MalI	GATC	5 cut(s)	147, 234, 375, 801, 1110
MboI	GATC	5 cut(s)	145, 232, 373, 799, 1108
MboII	GAAGA	6 cut(s)	155, 584, 637, 809, 914, 1201
MflI	RGATCY	2 cut(s)	145, 799
MhlI	GDGCHC	2 cut(s)	1030, 1294
MlyI	GAGTC	2 cut(s)	1144, 1425
Mph1103I	ATGCAT	1 cut(s)	885
MseI	TTAA	5 cut(s)	503, 509, 606, 701, 749
MslI	CAYNNNNRTG	4 cut(s)	48, 166, 269, 1346
MspCI	CTTAAG	1 cut(s)	502
MspI	CCGG	1 cut(s)	128
MspR9I	CCNGG	2 cut(s)	128, 288
Mva1269I	GAATGC	1 cut(s)	161
MvaI	CCWGG	1 cut(s)	288
MvnI	CGCG	2 cut(s)	326, 532
MwoI	GCNNNNNNNGC	5 cut(s)	98, 158, 398, 1270, 1459
NciI	CCSGG	1 cut(s)	128
NdeII	GATC	5 cut(s)	145, 232, 373, 799, 1108
NlaIII	CATG	3 cut(s)	47, 887, 1351
NlaIV	GGNNCC	2 cut(s)	330, 467
NsiI	ATGCAT	1 cut(s)	885
NspI	RCATGY	2 cut(s)	887, 1351
NspV	TTCGAA	1 cut(s)	141
PaeI	GCATGC	2 cut(s)	887, 1351
PaeR7I	CTCGAG	1 cut(s)	1328
PctI	GAATGC	1 cut(s)	161
PfeI	GAWTC	4 cut(s)	220, 380, 422, 1168
PkrI	GCNGC	2 cut(s)	94, 561
PleI	GAGTC	2 cut(s)	1143, 1425
PpsI	GAGTC	2 cut(s)	1143, 1425
Ppu21I	YACGTR	1 cut(s)	1043
PpuMI	RGGWCCY	1 cut(s)	466
Psp5II	RGGWCCY	1 cut(s)	466
Psp6I	CCWGG	1 cut(s)	286
PspGI	CCWGG	1 cut(s)	286
PspN4I	GGNNCC	2 cut(s)	330, 467
PspPI	GGNCC	2 cut(s)	466, 527
PspPPI	RGGWCCY	1 cut(s)	466
PspXI	VCTCGAGB	1 cut(s)	1328
PstNI	CAGNNNCTG	1 cut(s)	1459
PsuI	RGATCY	2 cut(s)	145, 799
RsaI	GTAC	4 cut(s)	1012, 1061, 1178, 1310
RsaNI	GTAC	4 cut(s)	1011, 1060, 1177, 1309
RseI	CAYNNNNRTG	4 cut(s)	48, 166, 269, 1346
SaqAI	TTAA	5 cut(s)	503, 509, 606, 701, 749
SatI	GCNGC	2 cut(s)	93, 560
Sau3AI	GATC	5 cut(s)	145, 232, 373, 799, 1108
Sau96I	GGNCC	2 cut(s)	466, 527
SchI	GAGTC	2 cut(s)	1144, 1425
ScrFI	CCNGG	2 cut(s)	128, 288
SduI	GDGCHC	2 cut(s)	1030, 1294
SfaNI	GCATC	6 cut(s)	388, 560, 730, 870, 1103, 1229
Sfr274I	CTCGAG	1 cut(s)	1328
SfuI	TTCGAA	1 cut(s)	141
SinI	GGWCC	2 cut(s)	466, 527
SlaI	CTCGAG	1 cut(s)	1328
SmiMI	CAYNNNNRTG	4 cut(s)	48, 166, 269, 1346
SmlI	CTYRAG	2 cut(s)	502, 1328
SmoI	CTYRAG	2 cut(s)	502, 1328
SnaBI	TACGTA	1 cut(s)	1043
SphI	GCATGC	2 cut(s)	887, 1351
SsiI	CCGC	2 cut(s)	326, 530
SspMI	CTAG	6 cut(s)	252, 300, 419, 443, 680, 1403
StyD4I	CCNGG	2 cut(s)	126, 286
TaaI	ACNGT	3 cut(s)	185, 1181, 1238
TaiI	ACGT	1 cut(s)	1045
TaqI	TCGA	3 cut(s)	141, 1111, 1329
TatI	WGTACW	2 cut(s)	1010, 1176
TfiI	GAWTC	4 cut(s)	220, 380, 422, 1168
Tru1I	TTAA	5 cut(s)	503, 509, 606, 701, 749
Tru9I	TTAA	5 cut(s)	503, 509, 606, 701, 749
TscAI	CASTG	2 cut(s)	408, 1222
TseI	GCWGC	2 cut(s)	92, 559
TspDTI	ATGAA	4 cut(s)	32, 102, 876, 996
TspRI	CASTG	2 cut(s)	408, 1222
Vha464I	CTTAAG	1 cut(s)	502
VpaK11BI	GGWCC	2 cut(s)	466, 527
XapI	RAATTY	3 cut(s)	628, 784, 1078
XbaI	TCTAGA	1 cut(s)	418
XceI	RCATGY	2 cut(s)	887, 1351
XhoI	CTCGAG	1 cut(s)	1328
XmiI	GTMKAC	1 cut(s)	1155
XspI	CTAG	6 cut(s)	252, 300, 419, 443, 680, 1403
Zsp2I	ATGCAT	1 cut(s)	885

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.