Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6C

Orthogroup ID

OG0003845

Physical Location & Seq

Genomic Coordinates Reverse (-)

46160512 .. 46169486

Gene Structure 8975 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6CG284000.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1341 bp

ATGCACCCCTGGAACGCACCCTTCAGCTTTGTTCTCAAGGGGTGTAAGTGCCCATCGAGTGCAAAATCTTTTGGCATGGAACTCTTTTTTCTTATAATTGAGGATACATTTTTCTTAGAAATAAGGGTTATTGCTTCTGATTTTTATTATTATTATTTTCTTTTTCATGTTGTTGGTTTGTGCGTTTGTTTCAGTTTGTCAAAGTGCATTTTCTCTAATTGCAGTGCTACAAAGAACAATGATCCAGATTCAGGTTATGCCGTGGATGCAGTGAAAAAGAAACTTCTAGATTCTCTTGAAGCTCTTGAACTAGGAGGCAATCTGGGAAATAGGGTCCTTGAACCTGAAGGGTATTATGCAAAGAGACCCTTAAGTTTGAATGCTATTGCTAATGGTCCGCGACTACGATTGCTATGGGCATCATTGCAGCGAATTGAGGAAGAGGTCAAAACTATCTCCAATTCTAAAACTTTTAACTCGGATTATTGCTTGAAGAATTTTTCCGGTATTATACAAAAATCCTGTCTCCCTGTATGCACGAGCTGGCTAGAAACAGAACTTGGACTTTTAAACAGCAGACCTAACAAGGCACTTGTTTTGCTGATGGATGCAAAGTTAAATGGAGACAACGCTATTTTACAGAACATCAGGAATTCTGGCAAGGAAGATCTTTATGCAGAATTGCTGTGTTTTCTTAGTTTTGGTTCTCTCAGGGAGGGTTGCTCTTATGACAGTGGCCTGTTTATGATGCATGCAGTTTCCATACTGGAAGATTTGGTGATAACTTTGTCAGATGGGATAGTAAGCATATATTTGGAGCTTATTTCTGTTGACAGCAATTTCTCAGATGAAATGGATGGCTTGTCTTTGGCATTGTGTACTTTGTCAACACGAGCACTACAAAGATTACGTAATGAGGTGGCTTTGTACCAATGGTTGTATCAAAATTTGGAAGCAGTTGCATCAATGTATGAGGATCGATTTGACTTATGGACATTTGAGAGTCAACTCATAGAGAAAGTAGACAATAGCTGGAATCAAAAGTACAGTTGGTGGAAGAGACTTATCCATAAAAAATCTGACACTGCATCATCAACATTAGACCATGTTTTGATAAGTAACTTTTCTATGCCTGTAAAGCGAACGAAGGAATTGAGAGCCCTTACAGGCTGGAGGTACTACTTCAGTCTATTCCTCGAGTTATCTGACATTAGCATGCCATTGGTCAGAGCAGTCATTGATAAAGTCAGCAAGGCTATGTCATTTTTTCTAGTCTGCTTGATTGGGAGGTCATTAGGACTCATTTATACTGGAATTAGGCAGTCTCTGCGATGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3685

Protein Analysis

446

Amino Acids

50.77

Weight (kDa)

6.55

Isoelectric Point (pI)

47.32

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3685	PF12452	248 - 341	1.1e-06	Protein of unknown function (DUF3685)
DUF3685	PF12452	366 - 441	4.5e-12	Protein of unknown function (DUF3685)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

Image

Tree File

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Publication-ready

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Orthologous Genes (Group: OG0003845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48830 AT5G48830
fragaria_vesca	FvH4_2g19230 FvH4_2g19230 FvH4_2g19230 FvH4_2g19230 FvH4_2g19230
malus_domestica	MD05G1177200.v1.1
prunus_persica	Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1
pyrus_communis	pycom05g16320
rosa_chinensis	RchiOBHm_Chr6g0285011
rosa_laevigata	RLG00000012689
rosa_multiflora	Rmu_sc0006185.1_g000014
rosa_roxburghii	Rroxscaffold_7G00183840 Rroxscaffold_7G00184120
rosa_rugosa	Rorug06G0169500 Rorug06G0169600 Rorug06G0169700 Rorug06G0169800
rosa_samantha	Rh6AG281700 Rh6BG282300 Rh6CG284000 Rh6DG277100
rosa_wichuraiana	Rw6G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	95
AccI	GTMKAC	1 cut(s)	1023
AccII	CGCG	1 cut(s)	400
AciI	CCGC	1 cut(s)	398
AclWI	GGATC	2 cut(s)	236, 984
AcsI	RAATTY	3 cut(s)	496, 652, 946
AcuI	CTGAAG	3 cut(s)	7, 366, 1168
AfaI	GTAC	4 cut(s)	880, 929, 1046, 1178
AfiI	CCNNNNNNNGG	1 cut(s)	251
AflII	CTTAAG	1 cut(s)	370
AgsI	TTSAA	5 cut(s)	299, 308, 341, 379, 493
AjnI	CCWGG	1 cut(s)	8
AjuI	GAANNNNNNNTTGG	2 cut(s)	543, 575
AluBI	AGCT	5 cut(s)	27, 302, 543, 820, 1032
AluI	AGCT	5 cut(s)	27, 302, 543, 820, 1032
Alw21I	GWGCWC	1 cut(s)	898
Alw26I	GTCTC	5 cut(s)	358, 530, 618, 1054, 1329
AlwI	GGATC	2 cut(s)	236, 984
AlwNI	CAGNNNCTG	1 cut(s)	1327
Ama87I	CYCGRG	1 cut(s)	1196
AoxI	GGCC	1 cut(s)	736
ApeKI	GCWGC	1 cut(s)	427
ApoI	RAATTY	3 cut(s)	496, 652, 946
ArsI	GACNNNNNNTTYG	2 cut(s)	508, 540
AspS9I	GGNCC	2 cut(s)	334, 395
AsuHPI	GGTGA	1 cut(s)	790
AvaI	CYCGRG	1 cut(s)	1196
AvaII	GGWCC	2 cut(s)	334, 395
BaeGI	GKGCMC	1 cut(s)	53
BanII	GRGCYC	1 cut(s)	1162
BauI	CACGAG	2 cut(s)	538, 891
Bbv12I	GWGCWC	1 cut(s)	898
BbvI	GCAGC	1 cut(s)	439
BccI	CCATC	5 cut(s)	61, 598, 788, 851, 1326
BceAI	ACGGC	1 cut(s)	245
BciT130I	CCWGG	1 cut(s)	10
BciVI	GTATCC	1 cut(s)	97
BcoDI	GTCTC	5 cut(s)	358, 530, 618, 1054, 1329
BfaI	CTAG	4 cut(s)	287, 311, 548, 1271
BfrI	CTTAAG	1 cut(s)	370
BfuI	GTATCC	1 cut(s)	97
BglII	AGATCT	1 cut(s)	667
BisI	GCNGC	1 cut(s)	428
BlsI	GCNGC	1 cut(s)	429
Bme1390I	CCNGG	1 cut(s)	10
Bme18I	GGWCC	2 cut(s)	334, 395
BmeT110I	CYCGRG	1 cut(s)	1196
BmgT120I	GGNCC	2 cut(s)	334, 395
BmiI	GGNNCC	1 cut(s)	335
BmrFI	CCNGG	1 cut(s)	10
BmsI	GCATC	6 cut(s)	256, 428, 598, 738, 971, 1097
BplI	GAGNNNNNCTC	2 cut(s)	707, 739
BpmI	CTGGAG	1 cut(s)	1192
BpuEI	CTTGAG	1 cut(s)	20
Bsa29I	ATCGAT	1 cut(s)	979
BsaAI	YACGTR	1 cut(s)	911
BsaI	GGTCTC	1 cut(s)	358
BsaJI	CCNNGG	2 cut(s)	8, 261
BsaWI	WCCGGW	1 cut(s)	503
Bsc4I	CCNNNNNNNGG	1 cut(s)	251
Bse1I	ACTGG	2 cut(s)	771, 1315
Bse3DI	GCAATG	1 cut(s)	422
BseBI	CCWGG	1 cut(s)	10
BseCI	ATCGAT	1 cut(s)	979
BseDI	CCNNGG	2 cut(s)	8, 261
BseGI	GGATG	3 cut(s)	271, 613, 862
BseLI	CCNNNNNNNGG	1 cut(s)	251
BseMI	GCAATG	1 cut(s)	422
BseMII	CTCAG	2 cut(s)	724, 858
BseNI	ACTGG	2 cut(s)	771, 1315
BseSI	GKGCMC	1 cut(s)	53
BseXI	GCAGC	1 cut(s)	439
Bsh1236I	CGCG	1 cut(s)	400
BshFI	GGCC	1 cut(s)	738
BshVI	ATCGAT	1 cut(s)	979
BsiHKAI	GWGCWC	1 cut(s)	898
BsiHKCI	CYCGRG	1 cut(s)	1196
BsiSI	CCGG	1 cut(s)	504
BslI	CCNNNNNNNGG	1 cut(s)	251
BsmAI	GTCTC	5 cut(s)	358, 530, 618, 1054, 1329
BsmI	GAATGC	1 cut(s)	385
BsnI	GGCC	1 cut(s)	738
Bso31I	GGTCTC	1 cut(s)	358
BsoBI	CYCGRG	1 cut(s)	1196
Bsp1286I	GDGCHC	3 cut(s)	53, 898, 1162
Bsp143I	GATC	3 cut(s)	241, 667, 976
BspACI	CCGC	1 cut(s)	398
BspANI	GGCC	1 cut(s)	738
BspCNI	CTCAG	2 cut(s)	723, 857
BspDI	ATCGAT	1 cut(s)	979
BspFNI	CGCG	1 cut(s)	400
BspLI	GGNNCC	1 cut(s)	335
BspPI	GGATC	2 cut(s)	236, 984
BspTI	CTTAAG	1 cut(s)	370
BspTNI	GGTCTC	1 cut(s)	358
BsrDI	GCAATG	1 cut(s)	422
BsrI	ACTGG	2 cut(s)	771, 1315
BssECI	CCNNGG	2 cut(s)	8, 261
BssMI	GATC	3 cut(s)	241, 667, 976
BssSI	CACGAG	2 cut(s)	538, 891
Bst2BI	CACGAG	2 cut(s)	538, 891
Bst2UI	CCWGG	1 cut(s)	10
Bst4CI	ACNGT	2 cut(s)	734, 1049
Bst6I	CTCTTC	2 cut(s)	435, 1052
BstAFI	CTTAAG	1 cut(s)	370
BstAPI	GCANNNNNTGC	1 cut(s)	1327
BstBAI	YACGTR	1 cut(s)	911
BstC8I	GCNNGC	3 cut(s)	545, 753, 1217
BstDEI	CTNAG	4 cut(s)	115, 695, 710, 844
BstDSI	CCRYGG	1 cut(s)	261
BstF5I	GGATG	3 cut(s)	271, 613, 862
BstFNI	CGCG	1 cut(s)	400
BstKTI	GATC	3 cut(s)	244, 670, 979
BstMAI	GTCTC	5 cut(s)	358, 530, 618, 1054, 1329
BstMBI	GATC	3 cut(s)	241, 667, 976
BstMWI	GCNNNNNNNGC	3 cut(s)	266, 1138, 1327
BstNI	CCWGG	1 cut(s)	10
BstNSI	RCATGY	2 cut(s)	755, 1219
BstSCI	CCNGG	1 cut(s)	8
BstSLI	GKGCMC	1 cut(s)	53
BstSNI	TACGTA	1 cut(s)	911
BstUI	CGCG	1 cut(s)	400
BstV1I	GCAGC	1 cut(s)	439
BstX2I	RGATCY	1 cut(s)	667
BstYI	RGATCY	1 cut(s)	667
Bsu15I	ATCGAT	1 cut(s)	979
BsuI	GTATCC	1 cut(s)	97
BsuRI	GGCC	1 cut(s)	738
BsuTUI	ATCGAT	1 cut(s)	979
BtgI	CCRYGG	1 cut(s)	261
BtsCI	GGATG	3 cut(s)	271, 613, 862
BtsI	GCAGTG	3 cut(s)	229, 276, 1083
BtsIMutI	CAGTG	4 cut(s)	229, 276, 739, 1083
Cac8I	GCNNGC	3 cut(s)	545, 753, 1217
CaiI	CAGNNNCTG	1 cut(s)	1327
Cfr13I	GGNCC	2 cut(s)	334, 395
ClaI	ATCGAT	1 cut(s)	979
Csp6I	GTAC	4 cut(s)	879, 928, 1045, 1177
CviAII	CATG	5 cut(s)	76, 167, 752, 1106, 1216
CviQI	GTAC	4 cut(s)	879, 928, 1045, 1177
DdeI	CTNAG	4 cut(s)	115, 695, 710, 844
DpnI	GATC	3 cut(s)	243, 669, 978
DpnII	GATC	3 cut(s)	241, 667, 976
DraI	TTTAAA	1 cut(s)	570
Eam1104I	CTCTTC	2 cut(s)	435, 1052
EarI	CTCTTC	2 cut(s)	435, 1052
Eco105I	TACGTA	1 cut(s)	911
Eco24I	GRGCYC	1 cut(s)	1162
Eco31I	GGTCTC	1 cut(s)	358
Eco47I	GGWCC	2 cut(s)	334, 395
Eco57I	CTGAAG	3 cut(s)	7, 366, 1168
Eco88I	CYCGRG	1 cut(s)	1196
EcoO109I	RGGNCCY	1 cut(s)	334
EcoRI	GAATTC	1 cut(s)	652
EcoRII	CCWGG	1 cut(s)	8
EcoT22I	ATGCAT	1 cut(s)	753
EcoT38I	GRGCYC	1 cut(s)	1162
FaeI	CATG	5 cut(s)	79, 170, 755, 1109, 1219
FalI	AAGNNNNNCTT	2 cut(s)	353, 385
FatI	CATG	5 cut(s)	75, 166, 751, 1105, 1215
FblI	GTMKAC	1 cut(s)	1023
Fnu4HI	GCNGC	1 cut(s)	428
FokI	GGATG	3 cut(s)	278, 620, 869
FriOI	GRGCYC	1 cut(s)	1162
Fsp4HI	GCNGC	1 cut(s)	428
FspBI	CTAG	4 cut(s)	287, 311, 548, 1271
GluI	GCNGC	1 cut(s)	428
GsuI	CTGGAG	1 cut(s)	1192
HaeIII	GGCC	1 cut(s)	738
HapII	CCGG	1 cut(s)	504
Hin1II	CATG	5 cut(s)	79, 170, 755, 1109, 1219
HincII	GTYRAC	3 cut(s)	832, 888, 1007
HindII	GTYRAC	3 cut(s)	832, 888, 1007
HinfI	GANTC	5 cut(s)	248, 290, 1003, 1036, 1299
HpaII	CCGG	1 cut(s)	504
HphI	GGTGA	1 cut(s)	790
Hpy166II	GTNNAC	5 cut(s)	832, 879, 888, 1007, 1024
Hpy188I	TCNGA	7 cut(s)	139, 481, 793, 847, 1081, 1207, 1229
Hpy188III	TCNNGA	5 cut(s)	245, 287, 296, 305, 649
Hpy8I	GTNNAC	5 cut(s)	832, 879, 888, 1007, 1024
HpyAV	CCTTC	3 cut(s)	31, 341, 1141
HpyCH4III	ACNGT	2 cut(s)	734, 1049
HpyCH4IV	ACGT	1 cut(s)	910
HpyF10VI	GCNNNNNNNGC	3 cut(s)	266, 1138, 1327
HpyF3I	CTNAG	4 cut(s)	115, 695, 710, 844
HpySE526I	ACGT	1 cut(s)	910
Hsp92II	CATG	5 cut(s)	79, 170, 755, 1109, 1219
Kzo9I	GATC	3 cut(s)	241, 667, 976
LmnI	GCTCC	1 cut(s)	817
Lsp1109I	GCAGC	1 cut(s)	439
LweI	GCATC	6 cut(s)	256, 428, 598, 738, 971, 1097
MaeI	CTAG	4 cut(s)	287, 311, 548, 1271
MaeII	ACGT	1 cut(s)	910
MaeIII	GTNAC	1 cut(s)	1118
MalI	GATC	3 cut(s)	243, 669, 978
MboI	GATC	3 cut(s)	241, 667, 976
MboII	GAAGA	5 cut(s)	452, 505, 677, 782, 1069
MflI	RGATCY	1 cut(s)	667
MhlI	GDGCHC	3 cut(s)	53, 898, 1162
MlyI	GAGTC	2 cut(s)	1012, 1293
Mph1103I	ATGCAT	1 cut(s)	753
MseI	TTAA	4 cut(s)	371, 474, 569, 617
MslI	CAYNNNNRTG	1 cut(s)	1214
MspCI	CTTAAG	1 cut(s)	370
MspI	CCGG	1 cut(s)	504
MspR9I	CCNGG	1 cut(s)	10
Mva1269I	GAATGC	1 cut(s)	385
MvaI	CCWGG	1 cut(s)	10
MvnI	CGCG	1 cut(s)	400
MwoI	GCNNNNNNNGC	3 cut(s)	266, 1138, 1327
NdeII	GATC	3 cut(s)	241, 667, 976
NlaIII	CATG	5 cut(s)	79, 170, 755, 1109, 1219
NlaIV	GGNNCC	1 cut(s)	335
NsiI	ATGCAT	1 cut(s)	753
NspI	RCATGY	2 cut(s)	755, 1219
PaeI	GCATGC	2 cut(s)	755, 1219
PaeR7I	CTCGAG	1 cut(s)	1196
PctI	GAATGC	1 cut(s)	385
PfeI	GAWTC	3 cut(s)	248, 290, 1036
PkrI	GCNGC	1 cut(s)	429
PleI	GAGTC	2 cut(s)	1011, 1293
PpsI	GAGTC	2 cut(s)	1011, 1293
Ppu21I	YACGTR	1 cut(s)	911
PpuMI	RGGWCCY	1 cut(s)	334
PsiI	TTATAA	1 cut(s)	95
Psp5II	RGGWCCY	1 cut(s)	334
Psp6I	CCWGG	1 cut(s)	8
PspGI	CCWGG	1 cut(s)	8
PspN4I	GGNNCC	1 cut(s)	335
PspPI	GGNCC	2 cut(s)	334, 395
PspPPI	RGGWCCY	1 cut(s)	334
PspXI	VCTCGAGB	1 cut(s)	1196
PstNI	CAGNNNCTG	1 cut(s)	1327
PsuI	RGATCY	1 cut(s)	667
RsaI	GTAC	4 cut(s)	880, 929, 1046, 1178
RsaNI	GTAC	4 cut(s)	879, 928, 1045, 1177
RseI	CAYNNNNRTG	1 cut(s)	1214
SaqAI	TTAA	4 cut(s)	371, 474, 569, 617
SatI	GCNGC	1 cut(s)	428
Sau3AI	GATC	3 cut(s)	241, 667, 976
Sau96I	GGNCC	2 cut(s)	334, 395
SchI	GAGTC	2 cut(s)	1012, 1293
ScrFI	CCNGG	1 cut(s)	10
SduI	GDGCHC	3 cut(s)	53, 898, 1162
SfaNI	GCATC	6 cut(s)	256, 428, 598, 738, 971, 1097
Sfr274I	CTCGAG	1 cut(s)	1196
SinI	GGWCC	2 cut(s)	334, 395
SlaI	CTCGAG	1 cut(s)	1196
SmiMI	CAYNNNNRTG	1 cut(s)	1214
SmlI	CTYRAG	3 cut(s)	35, 370, 1196
SmoI	CTYRAG	3 cut(s)	35, 370, 1196
SnaBI	TACGTA	1 cut(s)	911
SphI	GCATGC	2 cut(s)	755, 1219
SsiI	CCGC	1 cut(s)	398
SspMI	CTAG	4 cut(s)	287, 311, 548, 1271
StyD4I	CCNGG	1 cut(s)	8
TaaI	ACNGT	2 cut(s)	734, 1049
TaiI	ACGT	1 cut(s)	913
TaqI	TCGA	3 cut(s)	56, 979, 1197
TatI	WGTACW	2 cut(s)	878, 1044
TfiI	GAWTC	3 cut(s)	248, 290, 1036
Tru1I	TTAA	4 cut(s)	371, 474, 569, 617
Tru9I	TTAA	4 cut(s)	371, 474, 569, 617
TscAI	CASTG	4 cut(s)	229, 276, 739, 1090
TseI	GCWGC	1 cut(s)	427
TspDTI	ATGAA	2 cut(s)	155, 864
TspRI	CASTG	4 cut(s)	229, 276, 739, 1090
Vha464I	CTTAAG	1 cut(s)	370
VpaK11BI	GGWCC	2 cut(s)	334, 395
XapI	RAATTY	3 cut(s)	496, 652, 946
XbaI	TCTAGA	1 cut(s)	286
XceI	RCATGY	2 cut(s)	755, 1219
XhoI	CTCGAG	1 cut(s)	1196
XmiI	GTMKAC	1 cut(s)	1023
XspI	CTAG	4 cut(s)	287, 311, 548, 1271
Zsp2I	ATGCAT	1 cut(s)	753

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.