FvH4_2g19230

Protein of unknown function (DUF3685)

Basic Information

Type: gene
Biological Identity
fragaria_vesca
Fvb2
Physical Location & Seq
Reverse (-)
16385217 .. 16392412
7196 bp
Loading structure...
UTR
Exon/CDS
Intron
FvH4_2g19230.t1

Sequence Viewer

Length: 1539 bp
ATGGCAGAATGTTTGGCATCTCCACTATGTGTCAAGCTGCAAATGCAGAGGAGTTTTGCCGGAGGGAAGCCCCGGAGTTCACAATCGAAGATTGCGCAAAGGAAGCATTCCTATGGAAATTGCAAAACTGTTCCATTTCCAATGTGGAAGACGTGTGACTTCACTCCTCCTGGCTTCTCAAATTCGAAAGTTAGTCCCTTTTCTGGAGAGGCTGGTTTGAAATGTAGTTGCTTGGGGACTTTGATAGGCTCTGATGGTGCAACCGCCTCTGATTGGGTTCCTATTGTTGATCAAGTGCTTTTGACAGCCAGTGTGTTTCTCACATATATGGCTGGAGTAATTCCTGGTTACAACTCTAGTCCACCTTTTCAGAAGAATATCAACGACAATGCAGTTCCAAAGGCTTCAAACGCTTCTGGTAGTGCAAGAAAGAACAATGATCCAGATTCAGGTTATCCCATTGATGCAGTGAAAAAGAAACTTTCAGATTCTTTAGAAGCACTTGAACTAGGAGACAATCTGGGAAATCGGGTCCTTGAACCTGAAGGGTATTATGCTAAGAGACCTTTAAGTTTGAATGCTATTGCTGATGGTCCCCGACTACGATTGCTATGGACATCATTGCAGCGAATTGAGGAAGAGGTCAAATCTATCTCCAATTCTCAAACTGTTAACTCGGGTTATTGCTTGGCGGATTTTTCTGGTGTCATACAAAATTCCTGTCTCCCTGTATGCACTAGCTGGTTAGAAACAGAACTTGATCTTTTGAGCAGCAAACCTAACAAGGCACTTGTTTTGCTGATGGATGCAAAGTTAAATGGCGACAATGCCATTTTACAGAACATCAGGAACTCTGGAAAGGAAGATCTCTATGCAGAACTGCTGTACTTTCTTAGTTTTGGTTCACTCAGGGAGGGTTGCTCTTATGACAGTGGCCTGTTTATGATCCATGGAGTTTCCATACTGGAAGATTTGGTGATAACTTTATCAGATGGGATAGTAAGCATATATTTGGAGCTGATTTCTGTTGATAGCAATTTCTCAGATGAAATGGATGGCATGTCTTTGGCATTGTGTCCTTTGTCAACACGAGCACTACAAAGATTACGTAATGAGGTGGCTTTGTACCAATGGTTGTATCAAAATTTGGAAGCAGTTGCATCAATGTATGAGGATCGGTTTGACTTATGGACATTTGAGAGTCAACTCATCAAGAAAGCAGACAATAGCTGGAATGAAAACTACAGTTGGTGGAAGAGACTCATCCATAAAAAATCTGACACTGCGTCCTCAACATTAGACCATGTTTTGATAAATAACTTTTCTATGCCTGTAAAGCGAACAAAAGAACTGAGGGCCCTCACAGGCTGGAGGTACTACTTCAGTTTATTCCTTGAGTTATCTGACATTAGCATGCCTTTGGTCAGAGCAGTCATTGATAAAGTCAGCAAGGCTATGTCATTTTTTCTGGTCTGCTTGATTGGGAGGTCATTAGGACTCATTTATACCGGAATTAGGCAATCTCTGCGATGGAAGTGA
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families

Protein Analysis

513

Amino Acids

56.93

Weight (kDa)

6.89

Isoelectric Point (pI)

47.91

Instability Index
Protein Domains (Pfam)
Domain Name Pfam ID Position E-value Description
DUF3685 PF12452 317 - 407 1e-05 Protein of unknown function (DUF3685)
DUF3685 PF12452 433 - 507 5e-12 Protein of unknown function (DUF3685)
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

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Publication-ready

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc16I TGCGCA 1 cut(s) 96
AciI CCGC 2 cut(s) 264, 692
AclWI GGATC 3 cut(s) 434, 940, 1182
AcsI RAATTY 3 cut(s) 181, 715, 1144
AcuI CTGAAG 2 cut(s) 564, 1366
AdeI CACNNNGTG 1 cut(s) 29
AfaI GTAC 3 cut(s) 887, 1127, 1376
AfiI CCNNNNNNNGG 4 cut(s) 203, 273, 449, 1515
AflIII ACRYGT 1 cut(s) 152
AgsI TTSAA 5 cut(s) 220, 408, 506, 539, 577
AhdI GACNNNNNGTC 1 cut(s) 1285
AjiI CACGTC 1 cut(s) 153
AjnI CCWGG 2 cut(s) 169, 343
AluBI AGCT 4 cut(s) 37, 741, 1018, 1230
AluI AGCT 4 cut(s) 37, 741, 1018, 1230
Alw21I GWGCWC 1 cut(s) 1096
Alw26I GTCTC 4 cut(s) 507, 556, 728, 1252
AlwI GGATC 3 cut(s) 434, 940, 1182
Ama87I CYCGRG 1 cut(s) 676
AoxI GGCC 2 cut(s) 934, 1356
ApaI GGGCCC 1 cut(s) 1360
ApeKI GCWGC 3 cut(s) 37, 625, 771
ApoI RAATTY 3 cut(s) 181, 715, 1144
ArsI GACNNNNNNTTYG 2 cut(s) 706, 738
AspLEI GCGC 1 cut(s) 97
AspS9I GGNCC 4 cut(s) 532, 593, 1356, 1357
AsuC2I CCSGG 1 cut(s) 73
AsuHPI GGTGA 1 cut(s) 988
AsuII TTCGAA 1 cut(s) 185
AvaI CYCGRG 1 cut(s) 676
AvaII GGWCC 2 cut(s) 532, 593
BaeGI GKGCMC 1 cut(s) 1360
BanII GRGCYC 1 cut(s) 1360
BauI CACGAG 1 cut(s) 1089
BbsI GAAGAC 1 cut(s) 155
Bbv12I GWGCWC 1 cut(s) 1096
BbvI GCAGC 3 cut(s) 24, 637, 783
BccI CCATC 6 cut(s) 248, 584, 796, 986, 1049, 1524
BciT130I CCWGG 2 cut(s) 171, 345
BclI TGATCA 1 cut(s) 289
BcnI CCSGG 1 cut(s) 73
BcoDI GTCTC 4 cut(s) 507, 556, 728, 1252
BfaI CTAG 3 cut(s) 357, 509, 738
BfmI CTRYAG 1 cut(s) 1243
BglII AGATCT 1 cut(s) 865
BisI GCNGC 3 cut(s) 38, 626, 772
BlsI GCNGC 3 cut(s) 39, 627, 773
Bme1390I CCNGG 3 cut(s) 73, 171, 345
Bme18I GGWCC 2 cut(s) 532, 593
BmeRI GACNNNNNGTC 1 cut(s) 1285
BmeT110I CYCGRG 1 cut(s) 676
BmgBI CACGTC 1 cut(s) 153
BmgT120I GGNCC 4 cut(s) 532, 593, 1356, 1357
BmiI GGNNCC 4 cut(s) 279, 533, 595, 1358
BmrFI CCNGG 3 cut(s) 73, 171, 345
BmsI GCATC 4 cut(s) 26, 454, 796, 1169
BpiI GAAGAC 1 cut(s) 155
BplI GAGNNNNNCTC 2 cut(s) 905, 937
BpmI CTGGAG 3 cut(s) 225, 354, 1390
Bpu14I TTCGAA 1 cut(s) 185
BpuEI CTTGAG 1 cut(s) 1415
BpuMI CCSGG 1 cut(s) 73
BsaAI YACGTR 1 cut(s) 1109
BsaI GGTCTC 1 cut(s) 556
BsaJI CCNNGG 2 cut(s) 71, 949
BsaWI WCCGGW 1 cut(s) 1508
Bsc4I CCNNNNNNNGG 4 cut(s) 203, 273, 449, 1515
Bse1I ACTGG 2 cut(s) 309, 969
Bse3DI GCAATG 1 cut(s) 620
BseBI CCWGG 2 cut(s) 171, 345
BseDI CCNNGG 2 cut(s) 71, 949
BseGI GGATG 3 cut(s) 811, 1060, 1263
BseLI CCNNNNNNNGG 4 cut(s) 203, 273, 449, 1515
BseMI GCAATG 1 cut(s) 620
BseMII CTCAG 3 cut(s) 922, 1056, 1343
BseNI ACTGG 2 cut(s) 309, 969
BseRI GAGGAG 2 cut(s) 64, 156
BseSI GKGCMC 1 cut(s) 1360
BseXI GCAGC 3 cut(s) 24, 637, 783
BshFI GGCC 2 cut(s) 936, 1358
BsiHKAI GWGCWC 1 cut(s) 1096
BsiHKCI CYCGRG 1 cut(s) 676
BsiSI CCGG 3 cut(s) 60, 73, 1509
BslFI GGGAC 3 cut(s) 180, 250, 579
BslI CCNNNNNNNGG 4 cut(s) 203, 273, 449, 1515
BsmAI GTCTC 4 cut(s) 507, 556, 728, 1252
BsmFI GGGAC 3 cut(s) 180, 250, 579
BsmI GAATGC 2 cut(s) 106, 583
BsnI GGCC 2 cut(s) 936, 1358
Bso31I GGTCTC 1 cut(s) 556
BsoBI CYCGRG 1 cut(s) 676
Bsp119I TTCGAA 1 cut(s) 185
Bsp120I GGGCCC 1 cut(s) 1356
Bsp1286I GDGCHC 2 cut(s) 1096, 1360
Bsp143I GATC 6 cut(s) 289, 439, 760, 865, 945, 1174
Bsp19I CCATGG 1 cut(s) 949
BspACI CCGC 2 cut(s) 264, 692
BspANI GGCC 2 cut(s) 936, 1358
BspCNI CTCAG 3 cut(s) 921, 1055, 1344
BspLI GGNNCC 4 cut(s) 279, 533, 595, 1358
BspPI GGATC 3 cut(s) 434, 940, 1182
BspT104I TTCGAA 1 cut(s) 185
BspTNI GGTCTC 1 cut(s) 556
BsrDI GCAATG 1 cut(s) 620
BsrI ACTGG 2 cut(s) 309, 969
BssECI CCNNGG 2 cut(s) 71, 949
BssMI GATC 6 cut(s) 289, 439, 760, 865, 945, 1174
BssSI CACGAG 1 cut(s) 1089
BssT1I CCWWGG 1 cut(s) 949
Bst2BI CACGAG 1 cut(s) 1089
Bst2UI CCWGG 2 cut(s) 171, 345
Bst4CI ACNGT 4 cut(s) 130, 670, 932, 1247
Bst6I CTCTTC 2 cut(s) 633, 1250
BstAPI GCANNNNNTGC 1 cut(s) 1525
BstBAI YACGTR 1 cut(s) 1109
BstBI TTCGAA 1 cut(s) 185
BstC8I GCNNGC 1 cut(s) 1415
BstDEI CTNAG 5 cut(s) 558, 893, 908, 1042, 1352
BstDSI CCRYGG 1 cut(s) 949
BstF5I GGATG 3 cut(s) 811, 1060, 1263
BstHHI GCGC 1 cut(s) 97
BstKTI GATC 6 cut(s) 292, 442, 763, 868, 948, 1177
BstMAI GTCTC 4 cut(s) 507, 556, 728, 1252
BstMBI GATC 6 cut(s) 289, 439, 760, 865, 945, 1174
BstMWI GCNNNNNNNGC 5 cut(s) 43, 103, 410, 1336, 1525
BstNI CCWGG 2 cut(s) 171, 345
BstNSI RCATGY 2 cut(s) 1063, 1417
BstSCI CCNGG 3 cut(s) 71, 169, 343
BstSFI CTRYAG 1 cut(s) 1243
BstSLI GKGCMC 1 cut(s) 1360
BstSNI TACGTA 1 cut(s) 1109
BstV1I GCAGC 3 cut(s) 24, 637, 783
BstV2I GAAGAC 1 cut(s) 155
BstX2I RGATCY 1 cut(s) 865
BstYI RGATCY 1 cut(s) 865
BsuRI GGCC 2 cut(s) 936, 1358
BtgI CCRYGG 1 cut(s) 949
BtrI CACGTC 1 cut(s) 153
BtsCI GGATG 3 cut(s) 811, 1060, 1263
BtsI GCAGTG 2 cut(s) 474, 1281
BtsIMutI CAGTG 4 cut(s) 316, 474, 937, 1281
Cac8I GCNNGC 1 cut(s) 1415
CfoI GCGC 1 cut(s) 97
Cfr13I GGNCC 4 cut(s) 532, 593, 1356, 1357
CseI GACGC 1 cut(s) 1275
Csp6I GTAC 3 cut(s) 886, 1126, 1375
CviAII CATG 4 cut(s) 950, 1060, 1304, 1414
CviQI GTAC 3 cut(s) 886, 1126, 1375
DdeI CTNAG 5 cut(s) 558, 893, 908, 1042, 1352
DpnI GATC 6 cut(s) 291, 441, 762, 867, 947, 1176
DpnII GATC 6 cut(s) 289, 439, 760, 865, 945, 1174
DraIII CACNNNGTG 1 cut(s) 29
DriI GACNNNNNGTC 1 cut(s) 1285
Eam1104I CTCTTC 2 cut(s) 633, 1250
Eam1105I GACNNNNNGTC 1 cut(s) 1285
EarI CTCTTC 2 cut(s) 633, 1250
EciI GGCGGA 1 cut(s) 707
Eco105I TACGTA 1 cut(s) 1109
Eco130I CCWWGG 1 cut(s) 949
Eco24I GRGCYC 1 cut(s) 1360
Eco31I GGTCTC 1 cut(s) 556
Eco47I GGWCC 2 cut(s) 532, 593
Eco57I CTGAAG 2 cut(s) 564, 1366
Eco88I CYCGRG 1 cut(s) 676
EcoO109I RGGNCCY 3 cut(s) 532, 1356, 1357
EcoRII CCWGG 2 cut(s) 169, 343
EcoT14I CCWWGG 1 cut(s) 949
EcoT38I GRGCYC 1 cut(s) 1360
ErhI CCWWGG 1 cut(s) 949
FaeI CATG 4 cut(s) 953, 1063, 1307, 1417
FaqI GGGAC 3 cut(s) 180, 250, 579
FatI CATG 4 cut(s) 949, 1059, 1303, 1413
FbaI TGATCA 1 cut(s) 289
Fnu4HI GCNGC 3 cut(s) 38, 626, 772
FokI GGATG 3 cut(s) 818, 1067, 1250
FriOI GRGCYC 1 cut(s) 1360
Fsp4HI GCNGC 3 cut(s) 38, 626, 772
FspBI CTAG 3 cut(s) 357, 509, 738
FspI TGCGCA 1 cut(s) 96
GlaI GCGC 1 cut(s) 96
GluI GCNGC 3 cut(s) 38, 626, 772
GsuI CTGGAG 3 cut(s) 225, 354, 1390
HaeIII GGCC 2 cut(s) 936, 1358
HapII CCGG 3 cut(s) 60, 73, 1509
HgaI GACGC 1 cut(s) 1275
HhaI GCGC 1 cut(s) 97
Hin1II CATG 4 cut(s) 953, 1063, 1307, 1417
Hin6I GCGC 1 cut(s) 95
HinP1I GCGC 1 cut(s) 95
HincII GTYRAC 3 cut(s) 673, 1086, 1205
HindII GTYRAC 3 cut(s) 673, 1086, 1205
HinfI GANTC 5 cut(s) 446, 488, 1201, 1260, 1497
HpaI GTTAAC 1 cut(s) 673
HpaII CCGG 3 cut(s) 60, 73, 1509
HphI GGTGA 1 cut(s) 988
Hpy166II GTNNAC 6 cut(s) 80, 362, 673, 905, 1086, 1205
Hpy188I TCNGA 9 cut(s) 253, 271, 372, 487, 991, 1045, 1279, 1405, 1427
Hpy188III TCNNGA 5 cut(s) 204, 443, 847, 855, 1213
Hpy8I GTNNAC 6 cut(s) 80, 362, 673, 905, 1086, 1205
HpyAV CCTTC 1 cut(s) 539
HpyCH4III ACNGT 4 cut(s) 130, 670, 932, 1247
HpyCH4IV ACGT 2 cut(s) 152, 1108
HpyF10VI GCNNNNNNNGC 5 cut(s) 43, 103, 410, 1336, 1525
HpyF3I CTNAG 5 cut(s) 558, 893, 908, 1042, 1352
HpySE526I ACGT 2 cut(s) 152, 1108
Hsp92II CATG 4 cut(s) 953, 1063, 1307, 1417
HspAI GCGC 1 cut(s) 95
Ksp22I TGATCA 1 cut(s) 289
KspAI GTTAAC 1 cut(s) 673
Kzo9I GATC 6 cut(s) 289, 439, 760, 865, 945, 1174
LmnI GCTCC 1 cut(s) 1015
Lsp1109I GCAGC 3 cut(s) 24, 637, 783
LweI GCATC 4 cut(s) 26, 454, 796, 1169
MaeI CTAG 3 cut(s) 357, 509, 738
MaeII ACGT 2 cut(s) 152, 1108
MaeIII GTNAC 2 cut(s) 155, 347
MalI GATC 6 cut(s) 291, 441, 762, 867, 947, 1176
MboI GATC 6 cut(s) 289, 439, 760, 865, 945, 1174
MboII GAAGA 7 cut(s) 100, 160, 385, 650, 875, 980, 1267
MflI RGATCY 1 cut(s) 865
MhlI GDGCHC 2 cut(s) 1096, 1360
MluCI AATT 9 cut(s) 118, 181, 339, 630, 658, 715, 1036, 1144, 1512
MlyI GAGTC 3 cut(s) 1210, 1254, 1491
MseI TTAA 3 cut(s) 569, 672, 815
MslI CAYNNNNRTG 3 cut(s) 111, 326, 1412
MspI CCGG 3 cut(s) 60, 73, 1509
MspR9I CCNGG 3 cut(s) 73, 171, 345
Mva1269I GAATGC 2 cut(s) 106, 583
MvaI CCWGG 2 cut(s) 171, 345
MwoI GCNNNNNNNGC 5 cut(s) 43, 103, 410, 1336, 1525
NciI CCSGG 1 cut(s) 73
NcoI CCATGG 1 cut(s) 949
NdeII GATC 6 cut(s) 289, 439, 760, 865, 945, 1174
NlaIII CATG 4 cut(s) 953, 1063, 1307, 1417
NlaIV GGNNCC 4 cut(s) 279, 533, 595, 1358
NmuCI GTSAC 1 cut(s) 155
NsbI TGCGCA 1 cut(s) 96
NspI RCATGY 2 cut(s) 1063, 1417
NspV TTCGAA 1 cut(s) 185
PaeI GCATGC 1 cut(s) 1417
PctI GAATGC 2 cut(s) 106, 583
PfeI GAWTC 2 cut(s) 446, 488
PkrI GCNGC 3 cut(s) 39, 627, 773
PleI GAGTC 3 cut(s) 1209, 1254, 1491
PpsI GAGTC 3 cut(s) 1209, 1254, 1491
Ppu21I YACGTR 1 cut(s) 1109
PpuMI RGGWCCY 1 cut(s) 532
Psp5II RGGWCCY 1 cut(s) 532
Psp6I CCWGG 2 cut(s) 169, 343
PspGI CCWGG 2 cut(s) 169, 343
PspN4I GGNNCC 4 cut(s) 279, 533, 595, 1358
PspOMI GGGCCC 1 cut(s) 1356
PspPI GGNCC 4 cut(s) 532, 593, 1356, 1357
PspPPI RGGWCCY 1 cut(s) 532
PsuI RGATCY 1 cut(s) 865
RsaI GTAC 3 cut(s) 887, 1127, 1376
RsaNI GTAC 3 cut(s) 886, 1126, 1375
RseI CAYNNNNRTG 3 cut(s) 111, 326, 1412
SaqAI TTAA 3 cut(s) 569, 672, 815
SatI GCNGC 3 cut(s) 38, 626, 772
Sau3AI GATC 6 cut(s) 289, 439, 760, 865, 945, 1174
Sau96I GGNCC 4 cut(s) 532, 593, 1356, 1357
SchI GAGTC 3 cut(s) 1210, 1254, 1491
ScrFI CCNGG 3 cut(s) 73, 171, 345
SduI GDGCHC 2 cut(s) 1096, 1360
SfaNI GCATC 4 cut(s) 26, 454, 796, 1169
SfcI CTRYAG 1 cut(s) 1243
SfuI TTCGAA 1 cut(s) 185
SinI GGWCC 2 cut(s) 532, 593
SmiMI CAYNNNNRTG 3 cut(s) 111, 326, 1412
SmlI CTYRAG 1 cut(s) 1394
SmoI CTYRAG 1 cut(s) 1394
SnaBI TACGTA 1 cut(s) 1109
SphI GCATGC 1 cut(s) 1417
Sse9I AATT 9 cut(s) 118, 181, 339, 630, 658, 715, 1036, 1144, 1512
SsiI CCGC 2 cut(s) 264, 692
SspMI CTAG 3 cut(s) 357, 509, 738
StyD4I CCNGG 3 cut(s) 71, 169, 343
StyI CCWWGG 1 cut(s) 949
TaaI ACNGT 4 cut(s) 130, 670, 932, 1247
TaiI ACGT 2 cut(s) 155, 1111
TaqI TCGA 2 cut(s) 86, 185
TasI AATT 9 cut(s) 118, 181, 339, 630, 658, 715, 1036, 1144, 1512
TatI WGTACW 1 cut(s) 885
TfiI GAWTC 2 cut(s) 446, 488
Tru1I TTAA 3 cut(s) 569, 672, 815
Tru9I TTAA 3 cut(s) 569, 672, 815
TscAI CASTG 4 cut(s) 316, 474, 937, 1288
TseFI GTSAC 1 cut(s) 155
TseI GCWGC 3 cut(s) 37, 625, 771
Tsp45I GTSAC 1 cut(s) 155
TspDTI ATGAA 2 cut(s) 1062, 1251
TspRI CASTG 4 cut(s) 316, 474, 937, 1288
VpaK11BI GGWCC 2 cut(s) 532, 593
XapI RAATTY 3 cut(s) 181, 715, 1144
XceI RCATGY 2 cut(s) 1063, 1417
XcmI CCANNNNNNNNNTGG 1 cut(s) 141
XspI CTAG 3 cut(s) 357, 509, 738
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.