Basic Information

Type: gene

Biological Identity

Species

rosa_samantha

Chromosome

Chr6B

Orthogroup ID

OG0003845

Physical Location & Seq

Genomic Coordinates Reverse (-)

50440113 .. 50448991

Gene Structure 8879 bp

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UTR

Exon/CDS

Intron

Transcript / Protein ID

Rh6BG282300.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1470 bp

ATGACAACGCGGTTCCTAAGACCTCAAACGCTTCTGGTAGGTAAGGGTAAGCATGTCAAAATTTTGAAGGTTTTTGTCATTTCTAATGTCTCTCTGGGTAGATTATTAAGTGCCCACAGGCCCATTGGGTATGCACCCCCGGAACTCACCCTTCAGCTTTGTTCTCAAGGGTGTAAGTGCCCATCGAGTGCAAAATCTTTTGGCATGGAACTCTTTTTTCTTATAATTGAGGATACATTTTTCTTAGAAATAAGGGTTATTGCTTCTGATTGTTATTATTATTATTTTCTTTTTCATGTTGTTGGTTTGTGCGTTTGTTTCAGTTTGTCAAAGTGCATTTTCTCTAATTGCAGTGCTACAAAGAACAATGATCCAGATTCAGGTTATGCCGTGGATGCAGTGAAAAAGAAACTTCTAGATTCCCTTGAAGCTCTTGAACTAGGAGGCAATATGGGAAATAGGGTCCTTGAACCTGAAGGGTATTATGCAAAGAGACCCTTAAGTTTGAATGCTATTGCTAATGGTCCGCGACTACGATTGCTATGGGCATCATTGCAGCGAATTGCGGAAGAGGTCAAAACTATCTCCAATTCTCAAACTTTTAACTCGGATTATTGCTTGAAGAATTTTTCTGGTATTATACAAAAATCCTGTCTCCCTGTATGCACGAGCTGGCTAGAAACAGAACTTGGACTTTTAAACAGCAGACCTAACAAGGCACTTGTTTTGCTGATGGATGCAAAGTTAAATGGAGACAACGCTATTTTACAGAACATCAGGAATTCTGGCAAGGAAGATCTTTATGCAGAATTGCTGTGTTTTCTTAGTTTTGGTTCTCTCAGGGAGGGTTGCTCTTATGACAGTGGCCTGTTTATGATGCATGCAGTTTCCATACTGGAAGATTTGGTGATAACTTTGTCAGATGGGATAGTAAGCATATATTTGGAGCTTATTTCTGTTGACAGCAATTTCTCAGATGAAATGGATGGCTTGTCTTTGGCATTGTGTACTTTATCAACACGAGCACTACAAAGATTACGTAATGAGGTGGCTTTGTACCAATGGTTGTATCAAAATTTGGAAGCAGTTGCATCAATGTATGAGGATCGATTTGACTTATGGACATTTGAGAGTCAACTCATAGAGAAAGTAGACAATAGCTGGAATCAAAAGTACAGTTGGTGGAAGAGACTTATCCATAAAAAATCTGACACTGCATCATCAACATTAGACCGTGTTTTGATAAGTAACTTTTCTATGCCTGTAAAGCGAACGAAGGAATTGAGAGCCCTTACAGGCTGGAGGTACTACTTCAGTCTATTCCTCGAGTTATCTGACATTAGCATGCCATTGGTCAGAGCAGTCATTGATAAAGTCAGCAAGGCTATGTCATTTTTTCTAGTCTGCTTGATTGGGAGGTCATTAGGACTCATTCATACTGGAATTAGGCAGTCTCTGCGATGGAAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

No ontology terms assigned.

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

DUF3685

Protein Analysis

489

Amino Acids

55.34

Weight (kDa)

8.5

Isoelectric Point (pI)

43.7

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
DUF3685	PF12452	291 - 384	1.4e-06	Protein of unknown function (DUF3685)
DUF3685	PF12452	410 - 484	3.7e-12	Protein of unknown function (DUF3685)

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

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Align Labels (Cladogram)

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Publication-ready

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Orthologous Genes (Group: OG0003845)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G48830 AT5G48830
fragaria_vesca	FvH4_2g19230 FvH4_2g19230 FvH4_2g19230 FvH4_2g19230 FvH4_2g19230
malus_domestica	MD05G1177200.v1.1
prunus_persica	Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1 Prupe.8G204200_v2.0.a1
pyrus_communis	pycom05g16320
rosa_chinensis	RchiOBHm_Chr6g0285011
rosa_laevigata	RLG00000012689
rosa_multiflora	Rmu_sc0006185.1_g000014
rosa_roxburghii	Rroxscaffold_7G00183840 Rroxscaffold_7G00184120
rosa_rugosa	Rorug06G0169500 Rorug06G0169600 Rorug06G0169700 Rorug06G0169800
rosa_samantha	Rh6AG281700 Rh6BG282300 Rh6CG284000 Rh6DG277100
rosa_wichuraiana	Rw6G024200

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AanI	TTATAA	1 cut(s)	224
AccI	GTMKAC	1 cut(s)	1152
AccII	CGCG	2 cut(s)	10, 529
AciI	CCGC	3 cut(s)	10, 527, 566
AclWI	GGATC	2 cut(s)	365, 1113
AcsI	RAATTY	4 cut(s)	60, 625, 781, 1075
AcuI	CTGAAG	3 cut(s)	137, 495, 1297
AfaI	GTAC	4 cut(s)	1009, 1058, 1175, 1307
AfiI	CCNNNNNNNGG	1 cut(s)	380
AflII	CTTAAG	1 cut(s)	499
AgsI	TTSAA	6 cut(s)	67, 428, 437, 470, 508, 622
AjuI	GAANNNNNNNTTGG	2 cut(s)	672, 704
AluBI	AGCT	5 cut(s)	157, 431, 672, 949, 1161
AluI	AGCT	5 cut(s)	157, 431, 672, 949, 1161
Alw21I	GWGCWC	1 cut(s)	1027
Alw26I	GTCTC	6 cut(s)	94, 487, 659, 747, 1183, 1458
AlwI	GGATC	2 cut(s)	365, 1113
AlwNI	CAGNNNCTG	1 cut(s)	1456
Ama87I	CYCGRG	1 cut(s)	1325
AoxI	GGCC	2 cut(s)	119, 865
ApeKI	GCWGC	1 cut(s)	556
ApoI	RAATTY	4 cut(s)	60, 625, 781, 1075
ArsI	GACNNNNNNTTYG	2 cut(s)	637, 669
AspS9I	GGNCC	3 cut(s)	120, 463, 524
AsuC2I	CCSGG	1 cut(s)	140
AsuHPI	GGTGA	2 cut(s)	139, 919
AvaI	CYCGRG	1 cut(s)	1325
AvaII	GGWCC	2 cut(s)	463, 524
BaeGI	GKGCMC	2 cut(s)	115, 182
BanII	GRGCYC	1 cut(s)	1291
BauI	CACGAG	2 cut(s)	667, 1020
Bbv12I	GWGCWC	1 cut(s)	1027
BbvI	GCAGC	1 cut(s)	568
BccI	CCATC	5 cut(s)	190, 727, 917, 980, 1455
BceAI	ACGGC	1 cut(s)	374
BciVI	GTATCC	1 cut(s)	226
BcnI	CCSGG	1 cut(s)	140
BcoDI	GTCTC	6 cut(s)	94, 487, 659, 747, 1183, 1458
BfaI	CTAG	4 cut(s)	416, 440, 677, 1400
BfrI	CTTAAG	1 cut(s)	499
BfuI	GTATCC	1 cut(s)	226
BglII	AGATCT	1 cut(s)	796
BisI	GCNGC	1 cut(s)	557
BlsI	GCNGC	1 cut(s)	558
Bme1390I	CCNGG	1 cut(s)	140
Bme18I	GGWCC	2 cut(s)	463, 524
BmeT110I	CYCGRG	1 cut(s)	1325
BmgT120I	GGNCC	3 cut(s)	120, 463, 524
BmiI	GGNNCC	2 cut(s)	14, 464
BmrFI	CCNGG	1 cut(s)	140
BmsI	GCATC	6 cut(s)	385, 557, 727, 867, 1100, 1226
BplI	GAGNNNNNCTC	2 cut(s)	836, 868
BpmI	CTGGAG	1 cut(s)	1321
BpuEI	CTTGAG	1 cut(s)	150
BpuMI	CCSGG	1 cut(s)	140
Bsa29I	ATCGAT	1 cut(s)	1108
BsaAI	YACGTR	1 cut(s)	1040
BsaI	GGTCTC	1 cut(s)	487
BsaJI	CCNNGG	2 cut(s)	138, 390
Bsc4I	CCNNNNNNNGG	1 cut(s)	380
Bse1I	ACTGG	2 cut(s)	900, 1444
Bse3DI	GCAATG	1 cut(s)	551
BseCI	ATCGAT	1 cut(s)	1108
BseDI	CCNNGG	2 cut(s)	138, 390
BseGI	GGATG	3 cut(s)	400, 742, 991
BseLI	CCNNNNNNNGG	1 cut(s)	380
BseMI	GCAATG	1 cut(s)	551
BseMII	CTCAG	2 cut(s)	853, 987
BseNI	ACTGG	2 cut(s)	900, 1444
BseSI	GKGCMC	2 cut(s)	115, 182
BseXI	GCAGC	1 cut(s)	568
Bsh1236I	CGCG	2 cut(s)	10, 529
BshFI	GGCC	2 cut(s)	121, 867
BshVI	ATCGAT	1 cut(s)	1108
BsiHKAI	GWGCWC	1 cut(s)	1027
BsiHKCI	CYCGRG	1 cut(s)	1325
BsiSI	CCGG	1 cut(s)	140
BslI	CCNNNNNNNGG	1 cut(s)	380
BsmAI	GTCTC	6 cut(s)	94, 487, 659, 747, 1183, 1458
BsmI	GAATGC	1 cut(s)	514
BsnI	GGCC	2 cut(s)	121, 867
Bso31I	GGTCTC	1 cut(s)	487
BsoBI	CYCGRG	1 cut(s)	1325
Bsp1286I	GDGCHC	4 cut(s)	115, 182, 1027, 1291
Bsp143I	GATC	3 cut(s)	370, 796, 1105
BspACI	CCGC	3 cut(s)	10, 527, 566
BspANI	GGCC	2 cut(s)	121, 867
BspCNI	CTCAG	2 cut(s)	852, 986
BspDI	ATCGAT	1 cut(s)	1108
BspFNI	CGCG	2 cut(s)	10, 529
BspLI	GGNNCC	2 cut(s)	14, 464
BspPI	GGATC	2 cut(s)	365, 1113
BspTI	CTTAAG	1 cut(s)	499
BspTNI	GGTCTC	1 cut(s)	487
BsrDI	GCAATG	1 cut(s)	551
BsrI	ACTGG	2 cut(s)	900, 1444
BssECI	CCNNGG	2 cut(s)	138, 390
BssMI	GATC	3 cut(s)	370, 796, 1105
BssSI	CACGAG	2 cut(s)	667, 1020
Bst2BI	CACGAG	2 cut(s)	667, 1020
Bst4CI	ACNGT	3 cut(s)	863, 1178, 1235
Bst6I	CTCTTC	2 cut(s)	564, 1181
BstAFI	CTTAAG	1 cut(s)	499
BstAPI	GCANNNNNTGC	1 cut(s)	1456
BstBAI	YACGTR	1 cut(s)	1040
BstC8I	GCNNGC	3 cut(s)	674, 882, 1346
BstDEI	CTNAG	5 cut(s)	17, 244, 824, 839, 973
BstDSI	CCRYGG	1 cut(s)	390
BstF5I	GGATG	3 cut(s)	400, 742, 991
BstFNI	CGCG	2 cut(s)	10, 529
BstKTI	GATC	3 cut(s)	373, 799, 1108
BstMAI	GTCTC	6 cut(s)	94, 487, 659, 747, 1183, 1458
BstMBI	GATC	3 cut(s)	370, 796, 1105
BstMWI	GCNNNNNNNGC	3 cut(s)	395, 1267, 1456
BstNSI	RCATGY	3 cut(s)	56, 884, 1348
BstSCI	CCNGG	1 cut(s)	138
BstSLI	GKGCMC	2 cut(s)	115, 182
BstSNI	TACGTA	1 cut(s)	1040
BstUI	CGCG	2 cut(s)	10, 529
BstV1I	GCAGC	1 cut(s)	568
BstX2I	RGATCY	1 cut(s)	796
BstYI	RGATCY	1 cut(s)	796
Bsu15I	ATCGAT	1 cut(s)	1108
BsuI	GTATCC	1 cut(s)	226
BsuRI	GGCC	2 cut(s)	121, 867
BsuTUI	ATCGAT	1 cut(s)	1108
BtgI	CCRYGG	1 cut(s)	390
BtsCI	GGATG	3 cut(s)	400, 742, 991
BtsI	GCAGTG	3 cut(s)	358, 405, 1212
BtsIMutI	CAGTG	4 cut(s)	358, 405, 868, 1212
Cac8I	GCNNGC	3 cut(s)	674, 882, 1346
CaiI	CAGNNNCTG	1 cut(s)	1456
Cfr13I	GGNCC	3 cut(s)	120, 463, 524
ClaI	ATCGAT	1 cut(s)	1108
Csp6I	GTAC	4 cut(s)	1008, 1057, 1174, 1306
CviAII	CATG	5 cut(s)	53, 205, 296, 881, 1345
CviQI	GTAC	4 cut(s)	1008, 1057, 1174, 1306
DdeI	CTNAG	5 cut(s)	17, 244, 824, 839, 973
DpnI	GATC	3 cut(s)	372, 798, 1107
DpnII	GATC	3 cut(s)	370, 796, 1105
DraI	TTTAAA	1 cut(s)	699
Eam1104I	CTCTTC	2 cut(s)	564, 1181
EarI	CTCTTC	2 cut(s)	564, 1181
Eco105I	TACGTA	1 cut(s)	1040
Eco24I	GRGCYC	1 cut(s)	1291
Eco31I	GGTCTC	1 cut(s)	487
Eco47I	GGWCC	2 cut(s)	463, 524
Eco57I	CTGAAG	3 cut(s)	137, 495, 1297
Eco88I	CYCGRG	1 cut(s)	1325
EcoO109I	RGGNCCY	1 cut(s)	463
EcoRI	GAATTC	1 cut(s)	781
EcoT22I	ATGCAT	1 cut(s)	882
EcoT38I	GRGCYC	1 cut(s)	1291
FaeI	CATG	5 cut(s)	56, 208, 299, 884, 1348
FalI	AAGNNNNNCTT	2 cut(s)	482, 514
FatI	CATG	5 cut(s)	52, 204, 295, 880, 1344
FblI	GTMKAC	1 cut(s)	1152
Fnu4HI	GCNGC	1 cut(s)	557
FokI	GGATG	3 cut(s)	407, 749, 998
FriOI	GRGCYC	1 cut(s)	1291
Fsp4HI	GCNGC	1 cut(s)	557
FspBI	CTAG	4 cut(s)	416, 440, 677, 1400
GluI	GCNGC	1 cut(s)	557
GsuI	CTGGAG	1 cut(s)	1321
HaeIII	GGCC	2 cut(s)	121, 867
HapII	CCGG	1 cut(s)	140
Hin1II	CATG	5 cut(s)	56, 208, 299, 884, 1348
HincII	GTYRAC	2 cut(s)	961, 1136
HindII	GTYRAC	2 cut(s)	961, 1136
HinfI	GANTC	5 cut(s)	377, 419, 1132, 1165, 1428
HpaII	CCGG	1 cut(s)	140
HphI	GGTGA	2 cut(s)	139, 919
Hpy166II	GTNNAC	4 cut(s)	961, 1008, 1136, 1153
Hpy188I	TCNGA	7 cut(s)	268, 610, 922, 976, 1210, 1336, 1358
Hpy188III	TCNNGA	4 cut(s)	374, 416, 434, 778
Hpy8I	GTNNAC	4 cut(s)	961, 1008, 1136, 1153
HpyAV	CCTTC	4 cut(s)	61, 161, 470, 1270
HpyCH4III	ACNGT	3 cut(s)	863, 1178, 1235
HpyCH4IV	ACGT	1 cut(s)	1039
HpyF10VI	GCNNNNNNNGC	3 cut(s)	395, 1267, 1456
HpyF3I	CTNAG	5 cut(s)	17, 244, 824, 839, 973
HpySE526I	ACGT	1 cut(s)	1039
Hsp92II	CATG	5 cut(s)	56, 208, 299, 884, 1348
Kzo9I	GATC	3 cut(s)	370, 796, 1105
LmnI	GCTCC	1 cut(s)	946
Lsp1109I	GCAGC	1 cut(s)	568
LweI	GCATC	6 cut(s)	385, 557, 727, 867, 1100, 1226
MaeI	CTAG	4 cut(s)	416, 440, 677, 1400
MaeII	ACGT	1 cut(s)	1039
MaeIII	GTNAC	1 cut(s)	1247
MalI	GATC	3 cut(s)	372, 798, 1107
MboI	GATC	3 cut(s)	370, 796, 1105
MboII	GAAGA	5 cut(s)	581, 634, 806, 911, 1198
MflI	RGATCY	1 cut(s)	796
MhlI	GDGCHC	4 cut(s)	115, 182, 1027, 1291
MlyI	GAGTC	2 cut(s)	1141, 1422
Mph1103I	ATGCAT	1 cut(s)	882
MseI	TTAA	5 cut(s)	107, 500, 603, 698, 746
MslI	CAYNNNNRTG	1 cut(s)	1343
MspCI	CTTAAG	1 cut(s)	499
MspI	CCGG	1 cut(s)	140
MspR9I	CCNGG	1 cut(s)	140
Mva1269I	GAATGC	1 cut(s)	514
MvnI	CGCG	2 cut(s)	10, 529
MwoI	GCNNNNNNNGC	3 cut(s)	395, 1267, 1456
NciI	CCSGG	1 cut(s)	140
NdeII	GATC	3 cut(s)	370, 796, 1105
NlaIII	CATG	5 cut(s)	56, 208, 299, 884, 1348
NlaIV	GGNNCC	2 cut(s)	14, 464
NsiI	ATGCAT	1 cut(s)	882
NspI	RCATGY	3 cut(s)	56, 884, 1348
PaeI	GCATGC	2 cut(s)	884, 1348
PaeR7I	CTCGAG	1 cut(s)	1325
PctI	GAATGC	1 cut(s)	514
PfeI	GAWTC	3 cut(s)	377, 419, 1165
PkrI	GCNGC	1 cut(s)	558
PleI	GAGTC	2 cut(s)	1140, 1422
PpsI	GAGTC	2 cut(s)	1140, 1422
Ppu21I	YACGTR	1 cut(s)	1040
PpuMI	RGGWCCY	1 cut(s)	463
PsiI	TTATAA	1 cut(s)	224
Psp5II	RGGWCCY	1 cut(s)	463
PspN4I	GGNNCC	2 cut(s)	14, 464
PspPI	GGNCC	3 cut(s)	120, 463, 524
PspPPI	RGGWCCY	1 cut(s)	463
PspXI	VCTCGAGB	1 cut(s)	1325
PstNI	CAGNNNCTG	1 cut(s)	1456
PsuI	RGATCY	1 cut(s)	796
RsaI	GTAC	4 cut(s)	1009, 1058, 1175, 1307
RsaNI	GTAC	4 cut(s)	1008, 1057, 1174, 1306
RseI	CAYNNNNRTG	1 cut(s)	1343
SaqAI	TTAA	5 cut(s)	107, 500, 603, 698, 746
SatI	GCNGC	1 cut(s)	557
Sau3AI	GATC	3 cut(s)	370, 796, 1105
Sau96I	GGNCC	3 cut(s)	120, 463, 524
SchI	GAGTC	2 cut(s)	1141, 1422
ScrFI	CCNGG	1 cut(s)	140
SduI	GDGCHC	4 cut(s)	115, 182, 1027, 1291
SfaNI	GCATC	6 cut(s)	385, 557, 727, 867, 1100, 1226
Sfr274I	CTCGAG	1 cut(s)	1325
SinI	GGWCC	2 cut(s)	463, 524
SlaI	CTCGAG	1 cut(s)	1325
SmiMI	CAYNNNNRTG	1 cut(s)	1343
SmlI	CTYRAG	3 cut(s)	165, 499, 1325
SmoI	CTYRAG	3 cut(s)	165, 499, 1325
SnaBI	TACGTA	1 cut(s)	1040
SphI	GCATGC	2 cut(s)	884, 1348
SsiI	CCGC	3 cut(s)	10, 527, 566
SspMI	CTAG	4 cut(s)	416, 440, 677, 1400
StyD4I	CCNGG	1 cut(s)	138
TaaI	ACNGT	3 cut(s)	863, 1178, 1235
TaiI	ACGT	1 cut(s)	1042
TaqI	TCGA	3 cut(s)	185, 1108, 1326
TatI	WGTACW	2 cut(s)	1007, 1173
TfiI	GAWTC	3 cut(s)	377, 419, 1165
Tru1I	TTAA	5 cut(s)	107, 500, 603, 698, 746
Tru9I	TTAA	5 cut(s)	107, 500, 603, 698, 746
TscAI	CASTG	4 cut(s)	358, 405, 868, 1219
TseI	GCWGC	1 cut(s)	556
TspDTI	ATGAA	3 cut(s)	284, 993, 1424
TspRI	CASTG	4 cut(s)	358, 405, 868, 1219
Vha464I	CTTAAG	1 cut(s)	499
VpaK11BI	GGWCC	2 cut(s)	463, 524
XapI	RAATTY	4 cut(s)	60, 625, 781, 1075
XbaI	TCTAGA	1 cut(s)	415
XceI	RCATGY	3 cut(s)	56, 884, 1348
XcmI	CCANNNNNNNNNTGG	1 cut(s)	122
XhoI	CTCGAG	1 cut(s)	1325
XmiI	GTMKAC	1 cut(s)	1152
XspI	CTAG	4 cut(s)	416, 440, 677, 1400
Zsp2I	ATGCAT	1 cut(s)	882

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.