Basic Information

Type: gene

Biological Identity

Species

arabidopsis_thaliana

Chromosome

Orthogroup ID

OG0017040

Physical Location & Seq

Genomic Coordinates Reverse (-)

19998823 .. 20001572

Gene Structure 2750 bp

Loading structure...

UTR

Exon/CDS

Intron

Transcript / Protein ID

AT5G49330.1

Sequence Viewer

CDS Protein Promoter (2k)

Length: 1029 bp

ATGGGAAGGGCTCCGTGTTGTGAGAAAATCGGGTTGAAGAGAGGGAGATGGACAGCCGAGGAAGATGAGATCCTCACCAAGTATATTCAGACCAATGGTGAAGGTTCTTGGCGATCTTTGCCTAAGAAAGCTGGATTGTTGAGATGTGGAAAGAGCTGTAGACTAAGGTGGATAAACTACTTAAGAAGAGACTTAAAAAGAGGAAATATTACTTCCGACGAAGAAGAAATAATCGTCAAGTTGCATTCCCTTCTCGGCAACAGATGGTCACTTATTGCAACACATCTACCAGGAAGAACAGACAACGAAATTAAAAACTATTGGAACTCACATCTCAGCCGCAAAATCTATGCCTTCACTGCCGTTTCCGGAGATGGACACAATCTACTCGTCAACGATGTAGTCTTGAAGAAATCTTGTTCATCGTCTTCTGGAGCCAAGAACAATAACAAGACCAAGAAGAAGAAGAAGGGAAGGACTAGTAGGTCATCCATGAAGAAACACAAGCAAATGGTGACGGCCTCACAATGTTTCTCACAACCTAAGGAGCTAGAGAGTGATTTCAGTGAGGGAGGGCAAAATGGTAATTTTGAAGGAGAGTCTTTGGGGCCTTATGAGTGGTTGGATGGTGAGTTAGAACGGCTCTTGAGTAGTTGTGTCTGGGAATGCACTAGTGAAGAGGCTGTGATTGGAGTAAATGATGAAAAGGTGTGTGAGAGTGGGGACAATAGTAGTTGTTGTGTTAATTTGTTTGAAGAAGAACAAGGAAGCGAGACAAAGATTGGTCACGTAGGAATCACAGAGGTTGATCATGATATGACGGTGGAAAGAGAAAGAGAGGGAAGTTTTTTAAGTTCGAATTCAAATGAAAATAATGATAAAGATTGGTGGGTTGGTCTATGTAATTCTTCAGAAGTTGGGTTTGGGGTTGATGAGGAGTTGCTTGATTGGGAGTTTCAAGGTAATGTCACTTGTCAAAGTGATGATCTATGGGATCTCTCAGATATTGGAGAGATAACATTGGAGTGA

Functional Annotation

Gene Ontology

Molecular Function
Biological Process
Cellular Component

GO:0000981 GO:0000988 GO:0000989 GO:0001067 GO:0001076 GO:0001134 GO:0001135 GO:0003674 GO:0003676 GO:0003677 GO:0003700 GO:0005488 GO:0005575 GO:0005622 GO:0005623 GO:0005634 GO:0006355 GO:0006357 GO:0008150 GO:0008152 GO:0009058 GO:0009314 GO:0009411 GO:0009416 GO:0009628 GO:0009812 GO:0009813 GO:0009889 GO:0009891 GO:0009893 GO:0009962 GO:0009963 GO:0009987 GO:0010224 GO:0010468 GO:0010556 GO:0010557 GO:0010604 GO:0010628 GO:0019219 GO:0019222 GO:0030154 GO:0031323 GO:0031325 GO:0031326 GO:0031328 GO:0032502 GO:0042440 GO:0043226 GO:0043227 GO:0043229 GO:0043231 GO:0043565 GO:0044212 GO:0044424 GO:0044464 GO:0045893 GO:0045935 GO:0046148 GO:0048518 GO:0048522 GO:0048869 GO:0050789 GO:0050794 GO:0050896 GO:0051171 GO:0051173 GO:0051252 GO:0051254 GO:0051552 GO:0051553 GO:0051554 GO:0051555 GO:0060255 GO:0065007 GO:0071704 GO:0080090 GO:0097159 GO:0140110 GO:1900384 GO:1900386 GO:1901363 GO:1901576 GO:1901615 GO:1901617 GO:1902680 GO:1903506 GO:1903508 GO:2000112 GO:2001141

KEGG Pathways

Metabolic & Signaling

No pathways identified.

Pfam Domains

Protein Families

Myb_DNA-binding

Protein Analysis

342

Amino Acids

38.48

Weight (kDa)

5.21

Isoelectric Point (pI)

47.71

Instability Index

Protein Domains (Pfam)

Domain Name	Pfam ID	Position	E-value	Description
Myb_DNA-binding	PF00249	14 - 61	2e-15	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	17 - 75	7.9e-09	Myb-like DNA-binding domain
Myb_DNA-binding	PF00249	67 - 112	2.3e-17	Myb-like DNA-binding domain
Myb_DNA-bind_6	PF13921	71 - 117	4.6e-09	Myb-like DNA-binding domain

Hydrophobicity Profile (Kyte-Doolittle)

AI Structure Prediction Report

Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter

Style Settings

Font Size (px)

Line Width

Align Labels (Cladogram)

Image

Tree File

Tip: Beautify your tree with professional tools

Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.

Publication-ready

iTOL Interactive Tree Of Life · Most popular EvolView Flexible annotations MEGA Desktop phylogenetics suite FigTree Desktop tree editor

Orthologous Genes (Group: OG0017040)

Species	Orthologous Gene IDs
arabidopsis_thaliana	AT5G49330
pyrus_communis	pycom15g04920
rosa_chinensis	RchiOBHm_Chr3g0473591
rosa_laevigata	RLG00000024002
rosa_multiflora	Rmu_ssc0000322.1_g000028
rosa_roxburghii	Rroxscaffold_2G00130480 Rroxscaffold_3G00255700 Rroxscaffold_6G00408040 Rroxscaffold_7G00194780
rosa_samantha	Rh1DG328800 Rh2AG274100 Rh6AG192700 Rh7DG192700

Restriction Enzyme Sites

1 / 10

Enzyme	Recognition Site	Cut Count	Positions (bp)
AasI	GACNNNNNNGTC	1 cut(s)	484
AccI	GTMKAC	1 cut(s)	160
AccIII	TCCGGA	1 cut(s)	368
AciI	CCGC	1 cut(s)	340
AclWI	GGATC	2 cut(s)	64, 1002
AcsI	RAATTY	1 cut(s)	859
AcuI	CTGAAG	1 cut(s)	894
AflII	CTTAAG	1 cut(s)	181
AgsI	TTSAA	6 cut(s)	37, 409, 593, 755, 864, 959
AhlI	ACTAGT	2 cut(s)	479, 671
AjnI	CCWGG	1 cut(s)	289
AjuI	GAANNNNNNNTTGG	2 cut(s)	906, 938
AluBI	AGCT	3 cut(s)	131, 156, 550
AluI	AGCT	3 cut(s)	131, 156, 550
Alw26I	GTCTC	2 cut(s)	183, 767
AlwI	GGATC	2 cut(s)	64, 1002
Aor13HI	TCCGGA	1 cut(s)	368
AoxI	GGCC	2 cut(s)	519, 608
ApoI	RAATTY	1 cut(s)	859
AspS9I	GGNCC	1 cut(s)	608
AsuHPI	GGTGA	4 cut(s)	67, 110, 526, 641
AsuII	TTCGAA	1 cut(s)	857
AxyI	CCTNAGG	1 cut(s)	543
BanII	GRGCYC	1 cut(s)	13
BbsI	GAAGAC	1 cut(s)	420
BccI	CCATC	4 cut(s)	42, 258, 368, 620
BceAI	ACGGC	3 cut(s)	347, 534, 656
BciT130I	CCWGG	1 cut(s)	291
BclI	TGATCA	1 cut(s)	808
BcoDI	GTCTC	2 cut(s)	183, 767
BcuI	ACTAGT	2 cut(s)	479, 671
BfaI	CTAG	3 cut(s)	480, 551, 672
BfmI	CTRYAG	1 cut(s)	157
BfrI	CTTAAG	1 cut(s)	181
BisI	GCNGC	1 cut(s)	340
BlsI	GCNGC	1 cut(s)	341
Bme1390I	CCNGG	1 cut(s)	291
BmgT120I	GGNCC	1 cut(s)	608
BmiI	GGNNCC	3 cut(s)	12, 436, 609
BmrFI	CCNGG	1 cut(s)	291
BpiI	GAAGAC	1 cut(s)	420
BpmI	CTGGAG	1 cut(s)	453
Bpu14I	TTCGAA	1 cut(s)	857
BpuEI	CTTGAG	1 cut(s)	667
BsaAI	YACGTR	1 cut(s)	790
BsaJI	CCNNGG	1 cut(s)	57
BsaWI	WCCGGW	1 cut(s)	368
Bse21I	CCTNAGG	1 cut(s)	543
BseAI	TCCGGA	1 cut(s)	368
BseBI	CCWGG	1 cut(s)	291
BseDI	CCNNGG	1 cut(s)	57
BseGI	GGATG	2 cut(s)	488, 631
BseMII	CTCAG	2 cut(s)	349, 1014
BseRI	GAGGAG	1 cut(s)	950
BshFI	GGCC	2 cut(s)	521, 610
BsiSI	CCGG	1 cut(s)	369
BslFI	GGGAC	1 cut(s)	737
BsmAI	GTCTC	2 cut(s)	183, 767
BsmFI	GGGAC	1 cut(s)	737
BsmI	GAATGC	2 cut(s)	244, 671
BsnI	GGCC	2 cut(s)	521, 610
Bsp119I	TTCGAA	1 cut(s)	857
Bsp1286I	GDGCHC	1 cut(s)	13
Bsp13I	TCCGGA	1 cut(s)	368
Bsp143I	GATC	5 cut(s)	69, 113, 808, 985, 994
BspACI	CCGC	1 cut(s)	340
BspANI	GGCC	2 cut(s)	521, 610
BspCNI	CTCAG	2 cut(s)	348, 1013
BspEI	TCCGGA	1 cut(s)	368
BspHI	TCATGA	1 cut(s)	811
BspLI	GGNNCC	3 cut(s)	12, 436, 609
BspPI	GGATC	2 cut(s)	64, 1002
BspT104I	TTCGAA	1 cut(s)	857
BspTI	CTTAAG	1 cut(s)	181
BssECI	CCNNGG	1 cut(s)	57
BssMI	GATC	5 cut(s)	69, 113, 808, 985, 994
Bst2UI	CCWGG	1 cut(s)	291
Bst4CI	ACNGT	1 cut(s)	823
Bst6I	CTCTTC	3 cut(s)	32, 181, 672
BstAFI	CTTAAG	1 cut(s)	181
BstBAI	YACGTR	1 cut(s)	790
BstBI	TTCGAA	1 cut(s)	857
BstDEI	CTNAG	5 cut(s)	123, 164, 335, 543, 1000
BstF5I	GGATG	2 cut(s)	488, 631
BstKTI	GATC	5 cut(s)	72, 116, 811, 988, 997
BstMAI	GTCTC	2 cut(s)	183, 767
BstMBI	GATC	5 cut(s)	69, 113, 808, 985, 994
BstMWI	GCNNNNNNNGC	2 cut(s)	118, 359
BstNI	CCWGG	1 cut(s)	291
BstSCI	CCNGG	1 cut(s)	289
BstSFI	CTRYAG	1 cut(s)	157
BstV2I	GAAGAC	1 cut(s)	420
BstX2I	RGATCY	2 cut(s)	69, 994
BstYI	RGATCY	2 cut(s)	69, 994
Bsu36I	CCTNAGG	1 cut(s)	543
BsuRI	GGCC	2 cut(s)	521, 610
BtsCI	GGATG	2 cut(s)	488, 631
BtsI	GCAGTG	1 cut(s)	357
BtsIMutI	CAGTG	2 cut(s)	357, 571
CciI	TCATGA	1 cut(s)	811
Cfr13I	GGNCC	1 cut(s)	608
CviAII	CATG	2 cut(s)	493, 812
DdeI	CTNAG	5 cut(s)	123, 164, 335, 543, 1000
DpnI	GATC	5 cut(s)	71, 115, 810, 987, 996
DpnII	GATC	5 cut(s)	69, 113, 808, 985, 994
DrdI	GACNNNNNNGTC	1 cut(s)	484
DseDI	GACNNNNNNGTC	1 cut(s)	484
Eam1104I	CTCTTC	3 cut(s)	32, 181, 672
EarI	CTCTTC	3 cut(s)	32, 181, 672
Eco24I	GRGCYC	1 cut(s)	13
Eco57I	CTGAAG	1 cut(s)	894
Eco81I	CCTNAGG	1 cut(s)	543
EcoO109I	RGGNCCY	1 cut(s)	608
EcoRI	GAATTC	1 cut(s)	859
EcoRII	CCWGG	1 cut(s)	289
EcoT38I	GRGCYC	1 cut(s)	13
FaeI	CATG	2 cut(s)	496, 815
FaiI	YATR	8 cut(s)	84, 351, 494, 615, 813, 818, 901, 991
FaqI	GGGAC	1 cut(s)	737
FatI	CATG	2 cut(s)	492, 811
FbaI	TGATCA	1 cut(s)	808
FblI	GTMKAC	1 cut(s)	160
Fnu4HI	GCNGC	1 cut(s)	340
FokI	GGATG	2 cut(s)	475, 638
FriOI	GRGCYC	1 cut(s)	13
Fsp4HI	GCNGC	1 cut(s)	340
FspBI	CTAG	3 cut(s)	480, 551, 672
GluI	GCNGC	1 cut(s)	340
GsuI	CTGGAG	1 cut(s)	453
HaeIII	GGCC	2 cut(s)	521, 610
HapII	CCGG	1 cut(s)	369
Hin1II	CATG	2 cut(s)	496, 815
HincII	GTYRAC	1 cut(s)	394
HindII	GTYRAC	1 cut(s)	394
HinfI	GANTC	2 cut(s)	599, 795
HpaII	CCGG	1 cut(s)	369
HphI	GGTGA	4 cut(s)	67, 110, 526, 641
Hpy166II	GTNNAC	2 cut(s)	161, 394
Hpy188I	TCNGA	4 cut(s)	90, 217, 913, 1003
Hpy188III	TCNNGA	5 cut(s)	369, 406, 432, 646, 812
Hpy8I	GTNNAC	2 cut(s)	161, 394
Hpy99I	CGWCG	1 cut(s)	221
HpyAV	CCTTC	6 cut(s)	95, 260, 364, 463, 468, 587
HpyCH4III	ACNGT	1 cut(s)	823
HpyCH4IV	ACGT	1 cut(s)	789
HpyCH4V	TGCA	3 cut(s)	244, 278, 669
HpyF10VI	GCNNNNNNNGC	2 cut(s)	118, 359
HpyF3I	CTNAG	5 cut(s)	123, 164, 335, 543, 1000
HpySE526I	ACGT	1 cut(s)	789
Hsp92II	CATG	2 cut(s)	496, 815
Kpn2I	TCCGGA	1 cut(s)	368
Ksp22I	TGATCA	1 cut(s)	808
Kzo9I	GATC	5 cut(s)	69, 113, 808, 985, 994
LmnI	GCTCC	3 cut(s)	16, 434, 547
LpnPI	CCDG	6 cut(s)	117, 276, 303, 382, 417, 646
MaeI	CTAG	3 cut(s)	480, 551, 672
MaeII	ACGT	1 cut(s)	789
MaeIII	GTNAC	4 cut(s)	267, 514, 785, 967
MalI	GATC	5 cut(s)	71, 115, 810, 987, 996
MboI	GATC	5 cut(s)	69, 113, 808, 985, 994
MflI	RGATCY	2 cut(s)	69, 994
MhlI	GDGCHC	1 cut(s)	13
MluCI	AATT	5 cut(s)	309, 586, 745, 859, 904
MlyI	GAGTC	1 cut(s)	608
MmeI	TCCRAC	2 cut(s)	240, 603
MroI	TCCGGA	1 cut(s)	368
MseI	TTAA	5 cut(s)	182, 194, 312, 744, 851
MslI	CAYNNNNRTG	1 cut(s)	1024
MspCI	CTTAAG	1 cut(s)	181
MspI	CCGG	1 cut(s)	369
MspR9I	CCNGG	1 cut(s)	291
Mva1269I	GAATGC	2 cut(s)	244, 671
MvaI	CCWGG	1 cut(s)	291
MwoI	GCNNNNNNNGC	2 cut(s)	118, 359
NdeII	GATC	5 cut(s)	69, 113, 808, 985, 994
NlaIII	CATG	2 cut(s)	496, 815
NlaIV	GGNNCC	3 cut(s)	12, 436, 609
NmeAIII	GCCGAG	2 cut(s)	82, 234
NmuCI	GTSAC	4 cut(s)	267, 514, 785, 967
NspV	TTCGAA	1 cut(s)	857
PagI	TCATGA	1 cut(s)	811
PctI	GAATGC	2 cut(s)	244, 671
PfeI	GAWTC	1 cut(s)	795
PkrI	GCNGC	1 cut(s)	341
PleI	GAGTC	1 cut(s)	607
PpsI	GAGTC	1 cut(s)	607
Ppu21I	YACGTR	1 cut(s)	790
Psp6I	CCWGG	1 cut(s)	289
PspGI	CCWGG	1 cut(s)	289
PspN4I	GGNNCC	3 cut(s)	12, 436, 609
PspPI	GGNCC	1 cut(s)	608
PsuI	RGATCY	2 cut(s)	69, 994
RseI	CAYNNNNRTG	1 cut(s)	1024
SaqAI	TTAA	5 cut(s)	182, 194, 312, 744, 851
SatI	GCNGC	1 cut(s)	340
Sau3AI	GATC	5 cut(s)	69, 113, 808, 985, 994
Sau96I	GGNCC	1 cut(s)	608
SchI	GAGTC	1 cut(s)	608
ScrFI	CCNGG	1 cut(s)	291
SduI	GDGCHC	1 cut(s)	13
SfcI	CTRYAG	1 cut(s)	157
SfuI	TTCGAA	1 cut(s)	857
SmiMI	CAYNNNNRTG	1 cut(s)	1024
SmlI	CTYRAG	2 cut(s)	181, 646
SmoI	CTYRAG	2 cut(s)	181, 646
SpeI	ACTAGT	2 cut(s)	479, 671
Sse9I	AATT	5 cut(s)	309, 586, 745, 859, 904
SsiI	CCGC	1 cut(s)	340
SspI	AATATT	1 cut(s)	208
SspMI	CTAG	3 cut(s)	480, 551, 672
StyD4I	CCNGG	1 cut(s)	289
TaaI	ACNGT	1 cut(s)	823
TaiI	ACGT	1 cut(s)	792
TaqI	TCGA	1 cut(s)	857
TasI	AATT	5 cut(s)	309, 586, 745, 859, 904
TauI	GCSGC	1 cut(s)	342
TfiI	GAWTC	1 cut(s)	795
Tru1I	TTAA	5 cut(s)	182, 194, 312, 744, 851
Tru9I	TTAA	5 cut(s)	182, 194, 312, 744, 851
TscAI	CASTG	2 cut(s)	364, 571
TseFI	GTSAC	4 cut(s)	267, 514, 785, 967
Tsp45I	GTSAC	4 cut(s)	267, 514, 785, 967
TspDTI	ATGAA	4 cut(s)	411, 509, 717, 882
TspRI	CASTG	2 cut(s)	364, 571
Vha464I	CTTAAG	1 cut(s)	181
XapI	RAATTY	1 cut(s)	859
XmiI	GTMKAC	1 cut(s)	160
XspI	CTAG	3 cut(s)	480, 551, 672

Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.