Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G49330 |
| pyrus_communis | pycom15g04920 |
| rosa_chinensis | RchiOBHm_Chr3g0473591 |
| rosa_laevigata | RLG00000024002 |
| rosa_multiflora | Rmu_ssc0000322.1_g000028 |
| rosa_roxburghii | Rroxscaffold_2G00130480 Rroxscaffold_3G00255700 Rroxscaffold_6G00408040 Rroxscaffold_7G00194780 |
| rosa_samantha | Rh1DG328800 Rh2AG274100 Rh6AG192700 Rh7DG192700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 408 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 250, 340 |
| AgeI | ACCGGT | 1 cut(s) | 515 |
| AgsI | TTSAA | 4 cut(s) | 178, 191, 286, 478 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 254, 286 |
| AluBI | AGCT | 8 cut(s) | 29, 71, 134, 229, 239, 379, 492, 512 |
| AluI | AGCT | 8 cut(s) | 29, 71, 134, 229, 239, 379, 492, 512 |
| Alw26I | GTCTC | 2 cut(s) | 57, 83 |
| Ama87I | CYCGRG | 1 cut(s) | 499 |
| AoxI | GGCC | 1 cut(s) | 342 |
| ArsI | GACNNNNNNTTYG | 2 cut(s) | 18, 50 |
| AsiGI | ACCGGT | 1 cut(s) | 515 |
| AsuHPI | GGTGA | 1 cut(s) | 499 |
| AvaI | CYCGRG | 1 cut(s) | 499 |
| AxyI | CCTNAGG | 1 cut(s) | 246 |
| BccI | CCATC | 1 cut(s) | 362 |
| BcoDI | GTCTC | 2 cut(s) | 57, 83 |
| BfaI | CTAG | 2 cut(s) | 230, 326 |
| BfmI | CTRYAG | 1 cut(s) | 448 |
| BmeT110I | CYCGRG | 1 cut(s) | 499 |
| BmsI | GCATC | 1 cut(s) | 172 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 332, 364 |
| BpuEI | CTTGAG | 3 cut(s) | 77, 107, 359 |
| BsaI | GGTCTC | 1 cut(s) | 57 |
| BsaWI | WCCGGW | 1 cut(s) | 515 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 250, 340 |
| Bse118I | RCCGGY | 1 cut(s) | 515 |
| Bse1I | ACTGG | 1 cut(s) | 106 |
| Bse21I | CCTNAGG | 1 cut(s) | 246 |
| Bse3DI | GCAATG | 2 cut(s) | 53, 370 |
| BseGI | GGATG | 1 cut(s) | 259 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 250, 340 |
| BseMI | GCAATG | 2 cut(s) | 53, 370 |
| BseMII | CTCAG | 2 cut(s) | 126, 237 |
| BseNI | ACTGG | 1 cut(s) | 106 |
| BshFI | GGCC | 1 cut(s) | 344 |
| BshTI | ACCGGT | 1 cut(s) | 515 |
| BsiHKCI | CYCGRG | 1 cut(s) | 499 |
| BsiSI | CCGG | 1 cut(s) | 516 |
| BslFI | GGGAC | 1 cut(s) | 247 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 250, 340 |
| BsmAI | GTCTC | 2 cut(s) | 57, 83 |
| BsmFI | GGGAC | 1 cut(s) | 247 |
| BsnI | GGCC | 1 cut(s) | 344 |
| Bso31I | GGTCTC | 1 cut(s) | 57 |
| BsoBI | CYCGRG | 1 cut(s) | 499 |
| Bsp143I | GATC | 1 cut(s) | 320 |
| BspANI | GGCC | 1 cut(s) | 344 |
| BspCNI | CTCAG | 2 cut(s) | 127, 238 |
| BspHI | TCATGA | 1 cut(s) | 166 |
| BspMAI | CTGCAG | 1 cut(s) | 452 |
| BspTNI | GGTCTC | 1 cut(s) | 57 |
| BsrDI | GCAATG | 2 cut(s) | 53, 370 |
| BsrFI | RCCGGY | 1 cut(s) | 515 |
| BsrI | ACTGG | 1 cut(s) | 106 |
| BssAI | RCCGGY | 1 cut(s) | 515 |
| BssMI | GATC | 1 cut(s) | 320 |
| BstDEI | CTNAG | 2 cut(s) | 135, 246 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 338 |
| BstF5I | GGATG | 1 cut(s) | 259 |
| BstKTI | GATC | 1 cut(s) | 323 |
| BstMAI | GTCTC | 2 cut(s) | 57, 83 |
| BstMBI | GATC | 1 cut(s) | 320 |
| BstSFI | CTRYAG | 1 cut(s) | 448 |
| Bsu36I | CCTNAGG | 1 cut(s) | 246 |
| BsuRI | GGCC | 1 cut(s) | 344 |
| BtsCI | GGATG | 1 cut(s) | 259 |
| BtsI | GCAGTG | 1 cut(s) | 457 |
| BtsIMutI | CAGTG | 1 cut(s) | 457 |
| CciI | TCATGA | 1 cut(s) | 166 |
| Cfr10I | RCCGGY | 1 cut(s) | 515 |
| CspAI | ACCGGT | 1 cut(s) | 515 |
| CviAII | CATG | 3 cut(s) | 167, 353, 460 |
| DdeI | CTNAG | 2 cut(s) | 135, 246 |
| DpnI | GATC | 1 cut(s) | 322 |
| DpnII | GATC | 1 cut(s) | 320 |
| Eco31I | GGTCTC | 1 cut(s) | 57 |
| Eco81I | CCTNAGG | 1 cut(s) | 246 |
| Eco88I | CYCGRG | 1 cut(s) | 499 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 338 |
| FaeI | CATG | 3 cut(s) | 170, 356, 463 |
| FaiI | YATR | 8 cut(s) | 16, 168, 204, 354, 359, 398, 408, 461 |
| FaqI | GGGAC | 1 cut(s) | 247 |
| FatI | CATG | 3 cut(s) | 166, 352, 459 |
| FokI | GGATG | 1 cut(s) | 266 |
| FspBI | CTAG | 2 cut(s) | 230, 326 |
| HaeIII | GGCC | 1 cut(s) | 344 |
| HapII | CCGG | 1 cut(s) | 516 |
| Hin1II | CATG | 3 cut(s) | 170, 356, 463 |
| HindIII | AAGCTT | 1 cut(s) | 377 |
| HinfI | GANTC | 1 cut(s) | 91 |
| HpaII | CCGG | 1 cut(s) | 516 |
| HphI | GGTGA | 1 cut(s) | 499 |
| Hpy188I | TCNGA | 1 cut(s) | 306 |
| Hpy188III | TCNNGA | 3 cut(s) | 56, 76, 167 |
| HpyAV | CCTTC | 1 cut(s) | 261 |
| HpyCH4V | TGCA | 2 cut(s) | 185, 450 |
| HpyF3I | CTNAG | 2 cut(s) | 135, 246 |
| Hsp92II | CATG | 3 cut(s) | 170, 356, 463 |
| Kzo9I | GATC | 1 cut(s) | 320 |
| LpnPI | CCDG | 6 cut(s) | 87, 258, 279, 331, 387, 470 |
| LweI | GCATC | 1 cut(s) | 172 |
| MaeI | CTAG | 2 cut(s) | 230, 326 |
| MaeIII | GTNAC | 1 cut(s) | 20 |
| MalI | GATC | 1 cut(s) | 322 |
| MboI | GATC | 1 cut(s) | 320 |
| MboII | GAAGA | 1 cut(s) | 233 |
| MfeI | CAATTG | 1 cut(s) | 186 |
| MluCI | AATT | 6 cut(s) | 109, 186, 372, 423, 441, 478 |
| MlyI | GAGTC | 1 cut(s) | 85 |
| MmeI | TCCRAC | 1 cut(s) | 120 |
| MnlI | CCTC | 5 cut(s) | 210, 241, 334, 344, 495 |
| MseI | TTAA | 4 cut(s) | 375, 422, 440, 495 |
| MspI | CCGG | 1 cut(s) | 516 |
| MunI | CAATTG | 1 cut(s) | 186 |
| NdeII | GATC | 1 cut(s) | 320 |
| NlaIII | CATG | 3 cut(s) | 170, 356, 463 |
| NmuCI | GTSAC | 1 cut(s) | 20 |
| PaeR7I | CTCGAG | 1 cut(s) | 499 |
| PagI | TCATGA | 1 cut(s) | 166 |
| PinAI | ACCGGT | 1 cut(s) | 515 |
| PleI | GAGTC | 1 cut(s) | 85 |
| PpsI | GAGTC | 1 cut(s) | 85 |
| PsiI | TTATAA | 1 cut(s) | 408 |
| PspXI | VCTCGAGB | 1 cut(s) | 499 |
| PstI | CTGCAG | 1 cut(s) | 452 |
| SaqAI | TTAA | 4 cut(s) | 375, 422, 440, 495 |
| Sau3AI | GATC | 1 cut(s) | 320 |
| SchI | GAGTC | 1 cut(s) | 85 |
| SfaNI | GCATC | 1 cut(s) | 172 |
| SfcI | CTRYAG | 1 cut(s) | 448 |
| Sfr274I | CTCGAG | 1 cut(s) | 499 |
| SlaI | CTCGAG | 1 cut(s) | 499 |
| SmlI | CTYRAG | 4 cut(s) | 56, 86, 338, 499 |
| SmoI | CTYRAG | 4 cut(s) | 56, 86, 338, 499 |
| Sse9I | AATT | 6 cut(s) | 109, 186, 372, 423, 441, 478 |
| SspMI | CTAG | 2 cut(s) | 230, 326 |
| TaqI | TCGA | 2 cut(s) | 97, 500 |
| TasI | AATT | 6 cut(s) | 109, 186, 372, 423, 441, 478 |
| Tru1I | TTAA | 4 cut(s) | 375, 422, 440, 495 |
| Tru9I | TTAA | 4 cut(s) | 375, 422, 440, 495 |
| TscAI | CASTG | 1 cut(s) | 457 |
| TseFI | GTSAC | 1 cut(s) | 20 |
| Tsp45I | GTSAC | 1 cut(s) | 20 |
| TspDTI | ATGAA | 2 cut(s) | 81, 485 |
| TspRI | CASTG | 1 cut(s) | 457 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 338 |
| XhoI | CTCGAG | 1 cut(s) | 499 |
| XspI | CTAG | 2 cut(s) | 230, 326 |