Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G49330 |
| pyrus_communis | pycom15g04920 |
| rosa_chinensis | RchiOBHm_Chr3g0473591 |
| rosa_laevigata | RLG00000024002 |
| rosa_multiflora | Rmu_ssc0000322.1_g000028 |
| rosa_roxburghii | Rroxscaffold_2G00130480 Rroxscaffold_3G00255700 Rroxscaffold_6G00408040 Rroxscaffold_7G00194780 |
| rosa_samantha | Rh1DG328800 Rh2AG274100 Rh6AG192700 Rh7DG192700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 195 |
| AclWI | GGATC | 1 cut(s) | 101 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 37, 127 |
| AgsI | TTSAA | 2 cut(s) | 73, 265 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 41, 73 |
| AluBI | AGCT | 4 cut(s) | 26, 166, 279, 299 |
| AluI | AGCT | 4 cut(s) | 26, 166, 279, 299 |
| AlwI | GGATC | 1 cut(s) | 101 |
| AoxI | GGCC | 1 cut(s) | 129 |
| AspA2I | CCTAGG | 1 cut(s) | 16 |
| AsuHPI | GGTGA | 1 cut(s) | 286 |
| AvrII | CCTAGG | 1 cut(s) | 16 |
| AxyI | CCTNAGG | 1 cut(s) | 33 |
| BbsI | GAAGAC | 1 cut(s) | 249 |
| BfaI | CTAG | 2 cut(s) | 17, 113 |
| BfmI | CTRYAG | 1 cut(s) | 235 |
| BlnI | CCTAGG | 1 cut(s) | 16 |
| BpiI | GAAGAC | 1 cut(s) | 249 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 119, 151 |
| BpuEI | CTTGAG | 1 cut(s) | 146 |
| BsaJI | CCNNGG | 1 cut(s) | 16 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 37, 127 |
| Bse21I | CCTNAGG | 1 cut(s) | 33 |
| BseDI | CCNNGG | 1 cut(s) | 16 |
| BseGI | GGATG | 1 cut(s) | 46 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 37, 127 |
| BseMII | CTCAG | 1 cut(s) | 24 |
| BshFI | GGCC | 1 cut(s) | 131 |
| BslFI | GGGAC | 1 cut(s) | 34 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 37, 127 |
| BsmFI | GGGAC | 1 cut(s) | 34 |
| BsnI | GGCC | 1 cut(s) | 131 |
| Bsp143I | GATC | 3 cut(s) | 93, 107, 154 |
| BspANI | GGCC | 1 cut(s) | 131 |
| BspCNI | CTCAG | 1 cut(s) | 25 |
| BspMAI | CTGCAG | 1 cut(s) | 239 |
| BspPI | GGATC | 1 cut(s) | 101 |
| BssECI | CCNNGG | 1 cut(s) | 16 |
| BssMI | GATC | 3 cut(s) | 93, 107, 154 |
| BssT1I | CCWWGG | 1 cut(s) | 16 |
| Bst4CI | ACNGT | 1 cut(s) | 292 |
| BstDEI | CTNAG | 1 cut(s) | 33 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 125 |
| BstF5I | GGATG | 1 cut(s) | 46 |
| BstKTI | GATC | 3 cut(s) | 96, 110, 157 |
| BstMBI | GATC | 3 cut(s) | 93, 107, 154 |
| BstSFI | CTRYAG | 1 cut(s) | 235 |
| BstV2I | GAAGAC | 1 cut(s) | 249 |
| Bsu36I | CCTNAGG | 1 cut(s) | 33 |
| BsuRI | GGCC | 1 cut(s) | 131 |
| BtsCI | GGATG | 1 cut(s) | 46 |
| BtsI | GCAGTG | 1 cut(s) | 244 |
| BtsIMutI | CAGTG | 1 cut(s) | 244 |
| CviAII | CATG | 1 cut(s) | 140 |
| CviJI | RGCY | 7 cut(s) | 26, 62, 104, 131, 166, 279, 299 |
| CviKI_1 | RGCY | 7 cut(s) | 26, 62, 104, 131, 166, 279, 299 |
| DdeI | CTNAG | 1 cut(s) | 33 |
| DpnI | GATC | 3 cut(s) | 95, 109, 156 |
| DpnII | GATC | 3 cut(s) | 93, 107, 154 |
| Eco130I | CCWWGG | 1 cut(s) | 16 |
| Eco81I | CCTNAGG | 1 cut(s) | 33 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 125 |
| EcoT14I | CCWWGG | 1 cut(s) | 16 |
| ErhI | CCWWGG | 1 cut(s) | 16 |
| FaeI | CATG | 1 cut(s) | 143 |
| FaiI | YATR | 5 cut(s) | 141, 146, 185, 195, 248 |
| FaqI | GGGAC | 1 cut(s) | 34 |
| FatI | CATG | 1 cut(s) | 139 |
| FokI | GGATG | 1 cut(s) | 53 |
| FspBI | CTAG | 2 cut(s) | 17, 113 |
| HaeIII | GGCC | 1 cut(s) | 131 |
| Hin1II | CATG | 1 cut(s) | 143 |
| HindIII | AAGCTT | 1 cut(s) | 164 |
| HphI | GGTGA | 1 cut(s) | 286 |
| Hpy188I | TCNGA | 2 cut(s) | 93, 98 |
| HpyAV | CCTTC | 1 cut(s) | 48 |
| HpyCH4III | ACNGT | 1 cut(s) | 292 |
| HpyCH4V | TGCA | 1 cut(s) | 237 |
| HpyF3I | CTNAG | 1 cut(s) | 33 |
| Hsp92II | CATG | 1 cut(s) | 143 |
| Kzo9I | GATC | 3 cut(s) | 93, 107, 154 |
| LpnPI | CCDG | 5 cut(s) | 45, 66, 118, 174, 257 |
| MaeI | CTAG | 2 cut(s) | 17, 113 |
| MalI | GATC | 3 cut(s) | 95, 109, 156 |
| MboI | GATC | 3 cut(s) | 93, 107, 154 |
| MboII | GAAGA | 2 cut(s) | 20, 254 |
| MluCI | AATT | 4 cut(s) | 159, 210, 228, 265 |
| MnlI | CCTC | 3 cut(s) | 28, 121, 131 |
| MseI | TTAA | 4 cut(s) | 162, 209, 227, 281 |
| NdeII | GATC | 3 cut(s) | 93, 107, 154 |
| NlaIII | CATG | 1 cut(s) | 143 |
| PsiI | TTATAA | 1 cut(s) | 195 |
| PstI | CTGCAG | 1 cut(s) | 239 |
| SaqAI | TTAA | 4 cut(s) | 162, 209, 227, 281 |
| Sau3AI | GATC | 3 cut(s) | 93, 107, 154 |
| SetI | ASST | 8 cut(s) | 18, 28, 39, 59, 123, 168, 281, 301 |
| SfcI | CTRYAG | 1 cut(s) | 235 |
| SgeI | CNNG | 9 cut(s) | 29, 44, 93, 117, 125, 137, 152, 201, 284 |
| SmlI | CTYRAG | 1 cut(s) | 125 |
| SmoI | CTYRAG | 1 cut(s) | 125 |
| Sse9I | AATT | 4 cut(s) | 159, 210, 228, 265 |
| SspMI | CTAG | 2 cut(s) | 17, 113 |
| StyI | CCWWGG | 1 cut(s) | 16 |
| TaaI | ACNGT | 1 cut(s) | 292 |
| TaqI | TCGA | 1 cut(s) | 157 |
| TasI | AATT | 4 cut(s) | 159, 210, 228, 265 |
| Tru1I | TTAA | 4 cut(s) | 162, 209, 227, 281 |
| Tru9I | TTAA | 4 cut(s) | 162, 209, 227, 281 |
| TscAI | CASTG | 1 cut(s) | 244 |
| TspDTI | ATGAA | 1 cut(s) | 272 |
| TspRI | CASTG | 1 cut(s) | 244 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 125 |
| XmaJI | CCTAGG | 1 cut(s) | 16 |
| XspI | CTAG | 2 cut(s) | 17, 113 |