Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G49330 |
| pyrus_communis | pycom15g04920 |
| rosa_chinensis | RchiOBHm_Chr3g0473591 |
| rosa_laevigata | RLG00000024002 |
| rosa_multiflora | Rmu_ssc0000322.1_g000028 |
| rosa_roxburghii | Rroxscaffold_2G00130480 Rroxscaffold_3G00255700 Rroxscaffold_6G00408040 Rroxscaffold_7G00194780 |
| rosa_samantha | Rh1DG328800 Rh2AG274100 Rh6AG192700 Rh7DG192700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcuI | CTGAAG | 1 cut(s) | 219 |
| AfiI | CCNNNNNNNGG | 3 cut(s) | 43, 133, 251 |
| AgsI | TTSAA | 2 cut(s) | 79, 293 |
| AjiI | CACGTC | 1 cut(s) | 257 |
| AjnI | CCWGG | 1 cut(s) | 244 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 47, 79 |
| AluBI | AGCT | 1 cut(s) | 32 |
| AluI | AGCT | 1 cut(s) | 32 |
| AoxI | GGCC | 1 cut(s) | 135 |
| ApeKI | GCWGC | 1 cut(s) | 157 |
| Asp700I | GAANNNNTTC | 1 cut(s) | 175 |
| AsuNHI | GCTAGC | 1 cut(s) | 32 |
| AxyI | CCTNAGG | 1 cut(s) | 39 |
| BbvI | GCAGC | 1 cut(s) | 169 |
| BciT130I | CCWGG | 1 cut(s) | 246 |
| BfaI | CTAG | 3 cut(s) | 23, 33, 119 |
| BfmI | CTRYAG | 1 cut(s) | 191 |
| BisI | GCNGC | 1 cut(s) | 158 |
| BlsI | GCNGC | 1 cut(s) | 159 |
| Bme1390I | CCNGG | 1 cut(s) | 246 |
| BmgBI | CACGTC | 1 cut(s) | 257 |
| BmrFI | CCNGG | 1 cut(s) | 246 |
| BmsI | GCATC | 1 cut(s) | 269 |
| BmtI | GCTAGC | 1 cut(s) | 36 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 125, 157 |
| BpmI | CTGGAG | 1 cut(s) | 267 |
| BpuEI | CTTGAG | 1 cut(s) | 152 |
| Bsc4I | CCNNNNNNNGG | 3 cut(s) | 43, 133, 251 |
| Bse21I | CCTNAGG | 1 cut(s) | 39 |
| Bse3DI | GCAATG | 1 cut(s) | 152 |
| BseBI | CCWGG | 1 cut(s) | 246 |
| BseGI | GGATG | 1 cut(s) | 52 |
| BseLI | CCNNNNNNNGG | 3 cut(s) | 43, 133, 251 |
| BseMI | GCAATG | 1 cut(s) | 152 |
| BseMII | CTCAG | 1 cut(s) | 30 |
| BseXI | GCAGC | 1 cut(s) | 169 |
| BshFI | GGCC | 1 cut(s) | 137 |
| BslFI | GGGAC | 1 cut(s) | 40 |
| BslI | CCNNNNNNNGG | 3 cut(s) | 43, 133, 251 |
| BsmFI | GGGAC | 1 cut(s) | 40 |
| BsnI | GGCC | 1 cut(s) | 137 |
| Bsp143I | GATC | 1 cut(s) | 113 |
| BspANI | GGCC | 1 cut(s) | 137 |
| BspCNI | CTCAG | 1 cut(s) | 31 |
| BspHI | TCATGA | 1 cut(s) | 145 |
| BspMAI | CTGCAG | 1 cut(s) | 195 |
| BspOI | GCTAGC | 1 cut(s) | 36 |
| BsrDI | GCAATG | 1 cut(s) | 152 |
| BssMI | GATC | 1 cut(s) | 113 |
| Bst2UI | CCWGG | 1 cut(s) | 246 |
| BstC8I | GCNNGC | 1 cut(s) | 34 |
| BstDEI | CTNAG | 1 cut(s) | 39 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 131 |
| BstF5I | GGATG | 1 cut(s) | 52 |
| BstKTI | GATC | 1 cut(s) | 116 |
| BstMBI | GATC | 1 cut(s) | 113 |
| BstNI | CCWGG | 1 cut(s) | 246 |
| BstSCI | CCNGG | 1 cut(s) | 244 |
| BstSFI | CTRYAG | 1 cut(s) | 191 |
| BstV1I | GCAGC | 1 cut(s) | 169 |
| Bsu36I | CCTNAGG | 1 cut(s) | 39 |
| BsuRI | GGCC | 1 cut(s) | 137 |
| BtgZI | GCGATG | 1 cut(s) | 246 |
| BtrI | CACGTC | 1 cut(s) | 257 |
| BtsCI | GGATG | 1 cut(s) | 52 |
| Cac8I | GCNNGC | 1 cut(s) | 34 |
| CciI | TCATGA | 1 cut(s) | 145 |
| CviAII | CATG | 1 cut(s) | 146 |
| CviJI | RGCY | 6 cut(s) | 22, 32, 36, 68, 110, 137 |
| CviKI_1 | RGCY | 6 cut(s) | 22, 32, 36, 68, 110, 137 |
| DdeI | CTNAG | 1 cut(s) | 39 |
| DpnI | GATC | 1 cut(s) | 115 |
| DpnII | GATC | 1 cut(s) | 113 |
| Eco57I | CTGAAG | 1 cut(s) | 219 |
| Eco81I | CCTNAGG | 1 cut(s) | 39 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 131 |
| EcoRII | CCWGG | 1 cut(s) | 244 |
| FaeI | CATG | 1 cut(s) | 149 |
| FaiI | YATR | 2 cut(s) | 147, 301 |
| FalI | AAGNNNNNCTT | 2 cut(s) | 163, 195 |
| FaqI | GGGAC | 1 cut(s) | 40 |
| FatI | CATG | 1 cut(s) | 145 |
| Fnu4HI | GCNGC | 1 cut(s) | 158 |
| FokI | GGATG | 1 cut(s) | 59 |
| Fsp4HI | GCNGC | 1 cut(s) | 158 |
| FspBI | CTAG | 3 cut(s) | 23, 33, 119 |
| GluI | GCNGC | 1 cut(s) | 158 |
| GsuI | CTGGAG | 1 cut(s) | 267 |
| HaeIII | GGCC | 1 cut(s) | 137 |
| Hin1II | CATG | 1 cut(s) | 149 |
| HincII | GTYRAC | 1 cut(s) | 242 |
| HindII | GTYRAC | 1 cut(s) | 242 |
| HinfI | GANTC | 1 cut(s) | 238 |
| Hpy166II | GTNNAC | 2 cut(s) | 242, 254 |
| Hpy188I | TCNGA | 1 cut(s) | 99 |
| Hpy188III | TCNNGA | 1 cut(s) | 146 |
| Hpy8I | GTNNAC | 2 cut(s) | 242, 254 |
| HpyAV | CCTTC | 2 cut(s) | 54, 212 |
| HpyCH4IV | ACGT | 1 cut(s) | 256 |
| HpyCH4V | TGCA | 5 cut(s) | 4, 157, 193, 260, 299 |
| HpyF3I | CTNAG | 1 cut(s) | 39 |
| HpySE526I | ACGT | 1 cut(s) | 256 |
| Hsp92II | CATG | 1 cut(s) | 149 |
| Kzo9I | GATC | 1 cut(s) | 113 |
| LpnPI | CCDG | 6 cut(s) | 51, 72, 124, 213, 231, 258 |
| Lsp1109I | GCAGC | 1 cut(s) | 169 |
| LweI | GCATC | 1 cut(s) | 269 |
| MaeI | CTAG | 3 cut(s) | 23, 33, 119 |
| MaeII | ACGT | 1 cut(s) | 256 |
| MalI | GATC | 1 cut(s) | 115 |
| MboI | GATC | 1 cut(s) | 113 |
| MboII | GAAGA | 3 cut(s) | 26, 171, 212 |
| MfeI | CAATTG | 1 cut(s) | 5 |
| MluCI | AATT | 3 cut(s) | 5, 185, 223 |
| MlyI | GAGTC | 1 cut(s) | 247 |
| MnlI | CCTC | 5 cut(s) | 3, 34, 127, 137, 242 |
| MroXI | GAANNNNTTC | 1 cut(s) | 175 |
| MspR9I | CCNGG | 1 cut(s) | 246 |
| MunI | CAATTG | 1 cut(s) | 5 |
| MvaI | CCWGG | 1 cut(s) | 246 |
| NdeII | GATC | 1 cut(s) | 113 |
| NheI | GCTAGC | 1 cut(s) | 32 |
| NlaIII | CATG | 1 cut(s) | 149 |
| PagI | TCATGA | 1 cut(s) | 145 |
| PdmI | GAANNNNTTC | 1 cut(s) | 175 |
| PkrI | GCNGC | 1 cut(s) | 159 |
| PleI | GAGTC | 1 cut(s) | 246 |
| PpsI | GAGTC | 1 cut(s) | 246 |
| Psp6I | CCWGG | 1 cut(s) | 244 |
| PspGI | CCWGG | 1 cut(s) | 244 |
| PstI | CTGCAG | 1 cut(s) | 195 |
| SatI | GCNGC | 1 cut(s) | 158 |
| Sau3AI | GATC | 1 cut(s) | 113 |
| SchI | GAGTC | 1 cut(s) | 247 |
| ScrFI | CCNGG | 1 cut(s) | 246 |
| SetI | ASST | 7 cut(s) | 34, 45, 65, 129, 247, 253, 259 |
| SfaNI | GCATC | 1 cut(s) | 269 |
| SfcI | CTRYAG | 1 cut(s) | 191 |
| SmlI | CTYRAG | 1 cut(s) | 131 |
| SmoI | CTYRAG | 1 cut(s) | 131 |
| Sse9I | AATT | 3 cut(s) | 5, 185, 223 |
| SspMI | CTAG | 3 cut(s) | 23, 33, 119 |
| StyD4I | CCNGG | 1 cut(s) | 244 |
| TaiI | ACGT | 1 cut(s) | 259 |
| TasI | AATT | 3 cut(s) | 5, 185, 223 |
| TseI | GCWGC | 1 cut(s) | 157 |
| TspDTI | ATGAA | 1 cut(s) | 162 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 131 |
| XmnI | GAANNNNTTC | 1 cut(s) | 175 |
| XspI | CTAG | 3 cut(s) | 23, 33, 119 |