Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G49330 |
| pyrus_communis | pycom15g04920 |
| rosa_chinensis | RchiOBHm_Chr3g0473591 |
| rosa_laevigata | RLG00000024002 |
| rosa_multiflora | Rmu_ssc0000322.1_g000028 |
| rosa_roxburghii | Rroxscaffold_2G00130480 Rroxscaffold_3G00255700 Rroxscaffold_6G00408040 Rroxscaffold_7G00194780 |
| rosa_samantha | Rh1DG328800 Rh2AG274100 Rh6AG192700 Rh7DG192700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AcsI | RAATTY | 1 cut(s) | 305 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 46, 136 |
| AgeI | ACCGGT | 1 cut(s) | 275 |
| AgsI | TTSAA | 3 cut(s) | 82, 238, 318 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 50, 82 |
| AluBI | AGCT | 3 cut(s) | 35, 252, 272 |
| AluI | AGCT | 3 cut(s) | 35, 252, 272 |
| AoxI | GGCC | 1 cut(s) | 138 |
| ApoI | RAATTY | 1 cut(s) | 305 |
| AsiGI | ACCGGT | 1 cut(s) | 275 |
| AsuHPI | GGTGA | 2 cut(s) | 259, 280 |
| AsuNHI | GCTAGC | 1 cut(s) | 35 |
| AxyI | CCTNAGG | 1 cut(s) | 42 |
| BbsI | GAAGAC | 1 cut(s) | 222 |
| BfaI | CTAG | 3 cut(s) | 26, 36, 122 |
| BfmI | CTRYAG | 1 cut(s) | 208 |
| BmtI | GCTAGC | 1 cut(s) | 39 |
| BpiI | GAAGAC | 1 cut(s) | 222 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 128, 160 |
| BpuEI | CTTGAG | 2 cut(s) | 155, 244 |
| BsaWI | WCCGGW | 1 cut(s) | 275 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 46, 136 |
| Bse118I | RCCGGY | 1 cut(s) | 275 |
| Bse21I | CCTNAGG | 1 cut(s) | 42 |
| BseGI | GGATG | 1 cut(s) | 55 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 46, 136 |
| BseMII | CTCAG | 1 cut(s) | 33 |
| BshFI | GGCC | 1 cut(s) | 140 |
| BshTI | ACCGGT | 1 cut(s) | 275 |
| BsiSI | CCGG | 1 cut(s) | 276 |
| BslFI | GGGAC | 1 cut(s) | 43 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 46, 136 |
| BsmFI | GGGAC | 1 cut(s) | 43 |
| BsnI | GGCC | 1 cut(s) | 140 |
| Bsp143I | GATC | 2 cut(s) | 116, 163 |
| BspANI | GGCC | 1 cut(s) | 140 |
| BspCNI | CTCAG | 1 cut(s) | 34 |
| BspMAI | CTGCAG | 1 cut(s) | 212 |
| BspOI | GCTAGC | 1 cut(s) | 39 |
| BsrFI | RCCGGY | 1 cut(s) | 275 |
| BssAI | RCCGGY | 1 cut(s) | 275 |
| BssMI | GATC | 2 cut(s) | 116, 163 |
| BstC8I | GCNNGC | 1 cut(s) | 37 |
| BstDEI | CTNAG | 1 cut(s) | 42 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 134 |
| BstF5I | GGATG | 1 cut(s) | 55 |
| BstKTI | GATC | 2 cut(s) | 119, 166 |
| BstMBI | GATC | 2 cut(s) | 116, 163 |
| BstSFI | CTRYAG | 1 cut(s) | 208 |
| BstV2I | GAAGAC | 1 cut(s) | 222 |
| Bsu36I | CCTNAGG | 1 cut(s) | 42 |
| BsuRI | GGCC | 1 cut(s) | 140 |
| BtsCI | GGATG | 1 cut(s) | 55 |
| BtsI | GCAGTG | 1 cut(s) | 217 |
| BtsIMutI | CAGTG | 1 cut(s) | 217 |
| Cac8I | GCNNGC | 1 cut(s) | 37 |
| Cfr10I | RCCGGY | 1 cut(s) | 275 |
| CspAI | ACCGGT | 1 cut(s) | 275 |
| CviAII | CATG | 1 cut(s) | 149 |
| CviJI | RGCY | 8 cut(s) | 25, 35, 39, 71, 113, 140, 252, 272 |
| CviKI_1 | RGCY | 8 cut(s) | 25, 35, 39, 71, 113, 140, 252, 272 |
| DdeI | CTNAG | 1 cut(s) | 42 |
| DpnI | GATC | 2 cut(s) | 118, 165 |
| DpnII | GATC | 2 cut(s) | 116, 163 |
| Eco81I | CCTNAGG | 1 cut(s) | 42 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 134 |
| FaeI | CATG | 1 cut(s) | 152 |
| FaiI | YATR | 6 cut(s) | 150, 155, 221, 269, 311, 329 |
| FaqI | GGGAC | 1 cut(s) | 43 |
| FatI | CATG | 1 cut(s) | 148 |
| FokI | GGATG | 1 cut(s) | 62 |
| FspBI | CTAG | 3 cut(s) | 26, 36, 122 |
| HaeIII | GGCC | 1 cut(s) | 140 |
| HapII | CCGG | 1 cut(s) | 276 |
| Hin1II | CATG | 1 cut(s) | 152 |
| HinfI | GANTC | 1 cut(s) | 285 |
| HpaII | CCGG | 1 cut(s) | 276 |
| HphI | GGTGA | 2 cut(s) | 259, 280 |
| Hpy188I | TCNGA | 2 cut(s) | 102, 340 |
| HpyAV | CCTTC | 1 cut(s) | 57 |
| HpyCH4V | TGCA | 1 cut(s) | 210 |
| HpyF3I | CTNAG | 1 cut(s) | 42 |
| Hsp92II | CATG | 1 cut(s) | 152 |
| Kzo9I | GATC | 2 cut(s) | 116, 163 |
| LpnPI | CCDG | 7 cut(s) | 54, 75, 127, 230, 289, 304, 319 |
| MaeI | CTAG | 3 cut(s) | 26, 36, 122 |
| MalI | GATC | 2 cut(s) | 118, 165 |
| MboI | GATC | 2 cut(s) | 116, 163 |
| MboII | GAAGA | 2 cut(s) | 29, 227 |
| MluCI | AATT | 5 cut(s) | 168, 183, 201, 238, 305 |
| MmeI | TCCRAC | 1 cut(s) | 260 |
| MnlI | CCTC | 4 cut(s) | 6, 37, 130, 140 |
| MseI | TTAA | 4 cut(s) | 171, 182, 200, 254 |
| MspI | CCGG | 1 cut(s) | 276 |
| NdeII | GATC | 2 cut(s) | 116, 163 |
| NheI | GCTAGC | 1 cut(s) | 35 |
| NlaIII | CATG | 1 cut(s) | 152 |
| PfeI | GAWTC | 1 cut(s) | 285 |
| PinAI | ACCGGT | 1 cut(s) | 275 |
| PstI | CTGCAG | 1 cut(s) | 212 |
| SaqAI | TTAA | 4 cut(s) | 171, 182, 200, 254 |
| Sau3AI | GATC | 2 cut(s) | 116, 163 |
| SetI | ASST | 7 cut(s) | 37, 48, 68, 132, 254, 274, 338 |
| SfcI | CTRYAG | 1 cut(s) | 208 |
| SmlI | CTYRAG | 2 cut(s) | 134, 259 |
| SmoI | CTYRAG | 2 cut(s) | 134, 259 |
| Sse9I | AATT | 5 cut(s) | 168, 183, 201, 238, 305 |
| SspMI | CTAG | 3 cut(s) | 26, 36, 122 |
| TaqI | TCGA | 1 cut(s) | 166 |
| TasI | AATT | 5 cut(s) | 168, 183, 201, 238, 305 |
| TfiI | GAWTC | 1 cut(s) | 285 |
| Tru1I | TTAA | 4 cut(s) | 171, 182, 200, 254 |
| Tru9I | TTAA | 4 cut(s) | 171, 182, 200, 254 |
| TscAI | CASTG | 1 cut(s) | 217 |
| TspDTI | ATGAA | 1 cut(s) | 245 |
| TspRI | CASTG | 1 cut(s) | 217 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 134 |
| XapI | RAATTY | 1 cut(s) | 305 |
| XspI | CTAG | 3 cut(s) | 26, 36, 122 |