Tetratricopeptide repeat
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| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G49330 |
| pyrus_communis | pycom15g04920 |
| rosa_chinensis | RchiOBHm_Chr3g0473591 |
| rosa_laevigata | RLG00000024002 |
| rosa_multiflora | Rmu_ssc0000322.1_g000028 |
| rosa_roxburghii | Rroxscaffold_2G00130480 Rroxscaffold_3G00255700 Rroxscaffold_6G00408040 Rroxscaffold_7G00194780 |
| rosa_samantha | Rh1DG328800 Rh2AG274100 Rh6AG192700 Rh7DG192700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AfiI | CCNNNNNNNGG | 2 cut(s) | 118, 208 |
| AgsI | TTSAA | 2 cut(s) | 72, 154 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 122, 154 |
| AluBI | AGCT | 1 cut(s) | 107 |
| AluI | AGCT | 1 cut(s) | 107 |
| AoxI | GGCC | 1 cut(s) | 210 |
| AsuNHI | GCTAGC | 1 cut(s) | 107 |
| AxyI | CCTNAGG | 1 cut(s) | 114 |
| BccI | CCATC | 1 cut(s) | 215 |
| BfaI | CTAG | 3 cut(s) | 98, 108, 194 |
| BmsI | GCATC | 1 cut(s) | 66 |
| BmtI | GCTAGC | 1 cut(s) | 111 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 200, 232 |
| BpuEI | CTTGAG | 2 cut(s) | 14, 227 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 118, 208 |
| Bse21I | CCTNAGG | 1 cut(s) | 114 |
| BseGI | GGATG | 1 cut(s) | 127 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 118, 208 |
| BseMII | CTCAG | 1 cut(s) | 105 |
| BshFI | GGCC | 1 cut(s) | 212 |
| BslFI | GGGAC | 1 cut(s) | 115 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 118, 208 |
| BsmFI | GGGAC | 1 cut(s) | 115 |
| BsnI | GGCC | 1 cut(s) | 212 |
| Bsp143I | GATC | 2 cut(s) | 188, 235 |
| BspANI | GGCC | 1 cut(s) | 212 |
| BspCNI | CTCAG | 1 cut(s) | 106 |
| BspOI | GCTAGC | 1 cut(s) | 111 |
| BssMI | GATC | 2 cut(s) | 188, 235 |
| BstC8I | GCNNGC | 1 cut(s) | 109 |
| BstDEI | CTNAG | 1 cut(s) | 114 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 206 |
| BstF5I | GGATG | 1 cut(s) | 127 |
| BstKTI | GATC | 2 cut(s) | 191, 238 |
| BstMBI | GATC | 2 cut(s) | 188, 235 |
| BstNSI | RCATGY | 1 cut(s) | 13 |
| Bsu36I | CCTNAGG | 1 cut(s) | 114 |
| BsuRI | GGCC | 1 cut(s) | 212 |
| BtsCI | GGATG | 1 cut(s) | 127 |
| Cac8I | GCNNGC | 1 cut(s) | 109 |
| CviAII | CATG | 1 cut(s) | 10 |
| CviJI | RGCY | 6 cut(s) | 97, 107, 111, 143, 185, 212 |
| CviKI_1 | RGCY | 6 cut(s) | 97, 107, 111, 143, 185, 212 |
| DdeI | CTNAG | 1 cut(s) | 114 |
| DpnI | GATC | 2 cut(s) | 190, 237 |
| DpnII | GATC | 2 cut(s) | 188, 235 |
| Eco81I | CCTNAGG | 1 cut(s) | 114 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 206 |
| FaeI | CATG | 1 cut(s) | 13 |
| FaiI | YATR | 3 cut(s) | 11, 227, 250 |
| FaqI | GGGAC | 1 cut(s) | 115 |
| FatI | CATG | 1 cut(s) | 9 |
| FokI | GGATG | 1 cut(s) | 134 |
| FspBI | CTAG | 3 cut(s) | 98, 108, 194 |
| HaeIII | GGCC | 1 cut(s) | 212 |
| Hin1II | CATG | 1 cut(s) | 13 |
| Hpy188I | TCNGA | 1 cut(s) | 220 |
| HpyAV | CCTTC | 1 cut(s) | 129 |
| HpyCH4V | TGCA | 1 cut(s) | 79 |
| HpyF3I | CTNAG | 1 cut(s) | 114 |
| Hsp92II | CATG | 1 cut(s) | 13 |
| Kzo9I | GATC | 2 cut(s) | 188, 235 |
| LpnPI | CCDG | 4 cut(s) | 51, 126, 147, 199 |
| LweI | GCATC | 1 cut(s) | 66 |
| MaeI | CTAG | 3 cut(s) | 98, 108, 194 |
| MaeIII | GTNAC | 1 cut(s) | 41 |
| MalI | GATC | 2 cut(s) | 190, 237 |
| MboI | GATC | 2 cut(s) | 188, 235 |
| MboII | GAAGA | 2 cut(s) | 27, 101 |
| MfeI | CAATTG | 1 cut(s) | 80 |
| MluCI | AATT | 2 cut(s) | 80, 240 |
| MnlI | CCTC | 4 cut(s) | 78, 109, 202, 212 |
| MseI | TTAA | 1 cut(s) | 243 |
| MunI | CAATTG | 1 cut(s) | 80 |
| NdeII | GATC | 2 cut(s) | 188, 235 |
| NheI | GCTAGC | 1 cut(s) | 107 |
| NlaIII | CATG | 1 cut(s) | 13 |
| NspI | RCATGY | 1 cut(s) | 13 |
| SaqAI | TTAA | 1 cut(s) | 243 |
| Sau3AI | GATC | 2 cut(s) | 188, 235 |
| SetI | ASST | 6 cut(s) | 70, 109, 120, 140, 204, 249 |
| SfaNI | GCATC | 1 cut(s) | 66 |
| SmlI | CTYRAG | 2 cut(s) | 29, 206 |
| SmoI | CTYRAG | 2 cut(s) | 29, 206 |
| Sse9I | AATT | 2 cut(s) | 80, 240 |
| SspMI | CTAG | 3 cut(s) | 98, 108, 194 |
| TaqI | TCGA | 1 cut(s) | 238 |
| TasI | AATT | 2 cut(s) | 80, 240 |
| Tru1I | TTAA | 1 cut(s) | 243 |
| Tru9I | TTAA | 1 cut(s) | 243 |
| TspDTI | ATGAA | 1 cut(s) | 36 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 206 |
| XceI | RCATGY | 1 cut(s) | 13 |
| XspI | CTAG | 3 cut(s) | 98, 108, 194 |