Rroxscaffold_7G00194780

No description available

Design Primers CRISPR Design

Basic Information

Type: gene
Biological Identity
rosa_roxburghii
GWHEROQ00000007
OG0017040
Physical Location & Seq
Reverse (-)
36856632 .. 36863816
7185 bp
Loading structure...
UTR
Exon/CDS
Intron
Rroxscaffold_7G00194780.1

Sequence Viewer

Length: 771 bp
ATGAGAACCAGCGTGAAGAGAGCTCTAAGATCTAGTCGATTTCACGTCCGTAAGCCGCCATTCGAATTGGGTCGAGCATACTCTAGCCAAACACCCATTATTGCTTCGATTTTATTCACTCCAGCTAAATCGCCACAAACCACCGCCAAGGATCCGAAGACGACGAGGAGGAGGTCATTTTCTCGACCGGTGCAGCGACTTAGGGTGGCCAAATGGCGGAAAACCCGGCAGGTTTCTGGTTTTGGGTCGGGTGGAGTCTTCCGGATTGCGGGGAGTGAGAATCCCTGCGCTAAGCCTTTGGCCGGGCGTACGAAAACCTCTTGGGCCGGCCGGCCGGAGAGAAGAAACCGAAGCCCAAGCGTCCGAGCCATATCTCTATACTTGATATACTTCTTGATGAAAGCCCAGAAGAACAACACCTTGAAGATGCCACGTCGACTCTTATCGATGCACGGGGCTACCATTAATCACCTCGAGCTCAACCACGGAGAGGCAAGGCCTCGGTCGGAGCCGAGTCGGGTTTTGGGCCTCCAATTGGGTAATAAGCTCGACGATCTCGGCCCGGGTCTCGCCGGTGGCGCCGAGCCCACGATCGGTCCCGTAAAACGTGTCCACCGAGCCTTCTTCGGTTTCGAGATCTCCTCCGGTTCAGCCGGCTTCTCCGCCACGGCCACGGCTCCAGCTGCCACGTTGGACGGCTCCTCCGAGGTTTCCGGGCCGACTCGTCCTCGTCAACGGCTCGGATCCGGGTCGCGGGTCGATGGCTTGTAG
Functional Annotation
Gene Ontology
Molecular Function
Biological Process
Cellular Component
No ontology terms assigned.
KEGG Pathways
Metabolic & Signaling
No pathways identified.
Pfam Domains
Protein Families
No domains found.

Protein Analysis

256

Amino Acids

27.9

Weight (kDa)

11.85

Isoelectric Point (pI)

59.92

Instability Index
Protein Domains (Pfam)
No Pfam domains detected for this protein.
Hydrophobicity Profile (Kyte-Doolittle)
AI Structure Prediction Report
Calculating structure properties...

Genomic Context

Gene Family Tree

Species Filter
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Publication-ready
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Orthologous Genes (Group: OG0017040)

Species Orthologous Gene IDs
arabidopsis_thaliana AT5G49330
pyrus_communis pycom15g04920
rosa_chinensis RchiOBHm_Chr3g0473591
rosa_laevigata RLG00000024002
rosa_multiflora Rmu_ssc0000322.1_g000028
rosa_roxburghii Rroxscaffold_2G00130480 Rroxscaffold_3G00255700 Rroxscaffold_6G00408040 Rroxscaffold_7G00194780
rosa_samantha Rh1DG328800 Rh2AG274100 Rh6AG192700 Rh7DG192700

Restriction Enzyme Sites

1 / 10
Enzyme Recognition Site Cut Count Positions (bp)
Acc36I ACCTGC 1 cut(s) 220
AccB1I GGYRCC 1 cut(s) 578
AccI GTMKAC 1 cut(s) 436
AccII CGCG 1 cut(s) 754
AccIII TCCGGA 1 cut(s) 261
AciI CCGC 6 cut(s) 56, 144, 217, 269, 663, 754
AclWI GGATC 4 cut(s) 146, 159, 738, 751
AcoI YGGCCR 5 cut(s) 207, 300, 328, 332, 669
AcyI GRCGYC 1 cut(s) 579
AfaI GTAC 1 cut(s) 310
AfiI CCNNNNNNNGG 7 cut(s) 216, 268, 302, 490, 535, 593, 753
AflIII ACRYGT 1 cut(s) 607
AgeI ACCGGT 1 cut(s) 187
AgsI TTSAA 1 cut(s) 424
AjiI CACGTC 2 cut(s) 46, 434
AluBI AGCT 5 cut(s) 23, 125, 478, 547, 683
AluI AGCT 5 cut(s) 23, 125, 478, 547, 683
Alw21I GWGCWC 2 cut(s) 25, 480
Alw26I GTCTC 1 cut(s) 572
AlwI GGATC 4 cut(s) 146, 159, 738, 751
Ama87I CYCGRG 2 cut(s) 473, 562
Aor13HI TCCGGA 1 cut(s) 261
ApeKI GCWGC 2 cut(s) 193, 683
AseI ATTAAT 1 cut(s) 465
AsiGI ACCGGT 1 cut(s) 187
AspLEI GCGC 2 cut(s) 290, 581
AspS9I GGNCC 5 cut(s) 324, 526, 560, 596, 716
AsuC2I CCSGG 6 cut(s) 226, 304, 563, 564, 715, 748
AsuHPI GGTGA 1 cut(s) 461
AsuII TTCGAA 1 cut(s) 63
AvaI CYCGRG 2 cut(s) 473, 562
AvaII GGWCC 1 cut(s) 596
BalI TGGCCA 1 cut(s) 209
BamHI GGATCC 2 cut(s) 151, 743
BanI GGYRCC 1 cut(s) 578
BanII GRGCYC 3 cut(s) 25, 480, 588
BbsI GAAGAC 2 cut(s) 164, 250
Bbv12I GWGCWC 2 cut(s) 25, 480
BbvI GCAGC 2 cut(s) 205, 670
BccI CCATC 1 cut(s) 755
BceAI ACGGC 4 cut(s) 684, 690, 712, 752
BcnI CCSGG 6 cut(s) 226, 304, 563, 564, 715, 748
BcoDI GTCTC 1 cut(s) 572
BfaI CTAG 2 cut(s) 33, 84
BfoI RGCGCY 1 cut(s) 582
BfuAI ACCTGC 1 cut(s) 220
BglII AGATCT 2 cut(s) 29, 636
BisI GCNGC 3 cut(s) 56, 194, 684
BlpI GCTNAGC 1 cut(s) 291
BlsI GCNGC 3 cut(s) 57, 195, 685
Bme1390I CCNGG 6 cut(s) 226, 304, 563, 564, 715, 748
Bme18I GGWCC 1 cut(s) 596
BmeT110I CYCGRG 2 cut(s) 473, 562
BmgBI CACGTC 2 cut(s) 46, 434
BmgT120I GGNCC 5 cut(s) 324, 526, 560, 596, 716
BmiI GGNNCC 7 cut(s) 153, 510, 580, 598, 678, 700, 745
BmrFI CCNGG 6 cut(s) 226, 304, 563, 564, 715, 748
BmsI GCATC 2 cut(s) 417, 438
BpiI GAAGAC 2 cut(s) 164, 250
BplI GAGNNNNNCTC 2 cut(s) 626, 658
BpmI CTGGAG 2 cut(s) 105, 663
Bpu1102I GCTNAGC 1 cut(s) 291
Bpu14I TTCGAA 1 cut(s) 63
BpuMI CCSGG 6 cut(s) 226, 304, 563, 564, 715, 748
Bsa29I ATCGAT 1 cut(s) 446
BsaHI GRCGYC 1 cut(s) 579
BsaI GGTCTC 1 cut(s) 572
BsaJI CCNNGG 7 cut(s) 147, 484, 500, 562, 666, 672, 705
BsaWI WCCGGW 3 cut(s) 187, 261, 644
BsaXI ACNNNNNCTCC 2 cut(s) 686, 716
Bsc4I CCNNNNNNNGG 7 cut(s) 216, 268, 302, 490, 535, 593, 753
Bse118I RCCGGY 5 cut(s) 187, 326, 330, 572, 653
BseAI TCCGGA 1 cut(s) 261
BseCI ATCGAT 1 cut(s) 446
BseDI CCNNGG 7 cut(s) 147, 484, 500, 562, 666, 672, 705
BseLI CCNNNNNNNGG 7 cut(s) 216, 268, 302, 490, 535, 593, 753
BseRI GAGGAG 4 cut(s) 181, 184, 631, 691
BseX3I CGGCCG 2 cut(s) 328, 332
BseXI GCAGC 2 cut(s) 205, 670
BsgI GTGCAG 1 cut(s) 212
Bsh1236I CGCG 1 cut(s) 754
Bsh1285I CGRYCG 5 cut(s) 188, 331, 335, 506, 594
BshNI GGYRCC 1 cut(s) 578
BshTI ACCGGT 1 cut(s) 187
BshVI ATCGAT 1 cut(s) 446
BsiEI CGRYCG 5 cut(s) 188, 331, 335, 506, 594
BsiHKAI GWGCWC 2 cut(s) 25, 480
BsiHKCI CYCGRG 2 cut(s) 473, 562
BsiWI CGTACG 1 cut(s) 308
BslFI GGGAC 1 cut(s) 582
BslI CCNNNNNNNGG 7 cut(s) 216, 268, 302, 490, 535, 593, 753
BsmAI GTCTC 1 cut(s) 572
BsmFI GGGAC 1 cut(s) 582
Bso31I GGTCTC 1 cut(s) 572
BsoBI CYCGRG 2 cut(s) 473, 562
Bsp119I TTCGAA 1 cut(s) 63
Bsp1286I GDGCHC 3 cut(s) 25, 480, 588
Bsp13I TCCGGA 1 cut(s) 261
Bsp143I GATC 6 cut(s) 29, 151, 553, 591, 636, 743
Bsp1720I GCTNAGC 1 cut(s) 291
BspACI CCGC 6 cut(s) 56, 144, 217, 269, 663, 754
BspDI ATCGAT 1 cut(s) 446
BspEI TCCGGA 1 cut(s) 261
BspFNI CGCG 1 cut(s) 754
BspLI GGNNCC 7 cut(s) 153, 510, 580, 598, 678, 700, 745
BspMI ACCTGC 1 cut(s) 220
BspPI GGATC 4 cut(s) 146, 159, 738, 751
BspT104I TTCGAA 1 cut(s) 63
BspT107I GGYRCC 1 cut(s) 578
BspTNI GGTCTC 1 cut(s) 572
BsrFI RCCGGY 5 cut(s) 187, 326, 330, 572, 653
BssAI RCCGGY 5 cut(s) 187, 326, 330, 572, 653
BssECI CCNNGG 7 cut(s) 147, 484, 500, 562, 666, 672, 705
BssMI GATC 6 cut(s) 29, 151, 553, 591, 636, 743
BssNI GRCGYC 1 cut(s) 579
BssT1I CCWWGG 1 cut(s) 147
Bst6I CTCTTC 1 cut(s) 11
BstACI GRCGYC 1 cut(s) 579
BstBI TTCGAA 1 cut(s) 63
BstC8I GCNNGC 3 cut(s) 328, 332, 655
BstDEI CTNAG 3 cut(s) 26, 200, 291
BstDSI CCRYGG 3 cut(s) 484, 666, 672
BstFNI CGCG 1 cut(s) 754
BstH2I RGCGCY 1 cut(s) 582
BstHHI GCGC 2 cut(s) 290, 581
BstKTI GATC 6 cut(s) 32, 154, 556, 594, 639, 746
BstMAI GTCTC 1 cut(s) 572
BstMBI GATC 6 cut(s) 29, 151, 553, 591, 636, 743
BstMCI CGRYCG 5 cut(s) 188, 331, 335, 506, 594
BstMWI GCNNNNNNNGC 2 cut(s) 578, 683
BstSCI CCNGG 6 cut(s) 224, 302, 561, 562, 713, 746
BstUI CGCG 1 cut(s) 754
BstV1I GCAGC 2 cut(s) 205, 670
BstV2I GAAGAC 2 cut(s) 164, 250
BstX2I RGATCY 4 cut(s) 29, 151, 636, 743
BstYI RGATCY 4 cut(s) 29, 151, 636, 743
BstZI CGGCCG 2 cut(s) 328, 332
Bsu15I ATCGAT 1 cut(s) 446
BsuTUI ATCGAT 1 cut(s) 446
BtgI CCRYGG 3 cut(s) 484, 666, 672
BtrI CACGTC 2 cut(s) 46, 434
BveI ACCTGC 1 cut(s) 220
Cac8I GCNNGC 3 cut(s) 328, 332, 655
CfoI GCGC 2 cut(s) 290, 581
Cfr10I RCCGGY 5 cut(s) 187, 326, 330, 572, 653
Cfr13I GGNCC 5 cut(s) 324, 526, 560, 596, 716
Cfr9I CCCGGG 1 cut(s) 562
ClaI ATCGAT 1 cut(s) 446
CseI GACGC 1 cut(s) 349
Csp6I GTAC 1 cut(s) 309
CspAI ACCGGT 1 cut(s) 187
CviQI GTAC 1 cut(s) 309
DdeI CTNAG 3 cut(s) 26, 200, 291
DinI GGCGCC 1 cut(s) 580
DpnI GATC 6 cut(s) 31, 153, 555, 593, 638, 745
DpnII GATC 6 cut(s) 29, 151, 553, 591, 636, 743
EaeI YGGCCR 5 cut(s) 207, 300, 328, 332, 669
EagI CGGCCG 2 cut(s) 328, 332
Eam1104I CTCTTC 1 cut(s) 11
EarI CTCTTC 1 cut(s) 11
EciI GGCGGA 2 cut(s) 232, 652
Ecl136II GAGCTC 2 cut(s) 23, 478
EclXI CGGCCG 2 cut(s) 328, 332
Eco130I CCWWGG 1 cut(s) 147
Eco147I AGGCCT 1 cut(s) 499
Eco24I GRGCYC 3 cut(s) 25, 480, 588
Eco31I GGTCTC 1 cut(s) 572
Eco47I GGWCC 1 cut(s) 596
Eco52I CGGCCG 2 cut(s) 328, 332
Eco53kI GAGCTC 2 cut(s) 23, 478
Eco88I CYCGRG 2 cut(s) 473, 562
EcoICRI GAGCTC 2 cut(s) 23, 478
EcoT14I CCWWGG 1 cut(s) 147
EcoT38I GRGCYC 3 cut(s) 25, 480, 588
EgeI GGCGCC 1 cut(s) 580
EheI GGCGCC 1 cut(s) 580
ErhI CCWWGG 1 cut(s) 147
FaiI YATR 4 cut(s) 79, 371, 379, 388
FaqI GGGAC 1 cut(s) 582
FauI CCCGC 2 cut(s) 262, 747
FblI GTMKAC 1 cut(s) 436
Fnu4HI GCNGC 3 cut(s) 56, 194, 684
FriOI GRGCYC 3 cut(s) 25, 480, 588
FseI GGCCGGCC 2 cut(s) 330, 334
Fsp4HI GCNGC 3 cut(s) 56, 194, 684
FspBI CTAG 2 cut(s) 33, 84
GlaI GCGC 2 cut(s) 289, 580
GluI GCNGC 3 cut(s) 56, 194, 684
GsuI CTGGAG 2 cut(s) 105, 663
HaeII RGCGCY 1 cut(s) 582
HgaI GACGC 1 cut(s) 349
HhaI GCGC 2 cut(s) 290, 581
Hin1I GRCGYC 1 cut(s) 579
Hin6I GCGC 2 cut(s) 288, 579
HinP1I GCGC 2 cut(s) 288, 579
HincII GTYRAC 2 cut(s) 437, 734
HindII GTYRAC 2 cut(s) 437, 734
HinfI GANTC 5 cut(s) 255, 280, 438, 514, 721
HphI GGTGA 1 cut(s) 461
Hpy166II GTNNAC 3 cut(s) 437, 613, 734
Hpy188I TCNGA 5 cut(s) 156, 365, 508, 706, 743
Hpy188III TCNNGA 4 cut(s) 183, 262, 394, 634
Hpy8I GTNNAC 3 cut(s) 437, 613, 734
Hpy99I CGWCG 3 cut(s) 166, 438, 554
HpyAV CCTTC 1 cut(s) 631
HpyCH4IV ACGT 4 cut(s) 45, 433, 607, 689
HpyCH4V TGCA 2 cut(s) 193, 451
HpyF10VI GCNNNNNNNGC 2 cut(s) 578, 683
HpyF3I CTNAG 3 cut(s) 26, 200, 291
HpySE526I ACGT 4 cut(s) 45, 433, 607, 689
Hsp92I GRCGYC 1 cut(s) 579
HspAI GCGC 2 cut(s) 288, 579
KasI GGCGCC 1 cut(s) 578
Kpn2I TCCGGA 1 cut(s) 261
KroI GCCGGC 3 cut(s) 326, 330, 653
KroNI GCCGGC 3 cut(s) 328, 332, 655
Kzo9I GATC 6 cut(s) 29, 151, 553, 591, 636, 743
LmnI GCTCC 3 cut(s) 508, 682, 704
Lsp1109I GCAGC 2 cut(s) 205, 670
LweI GCATC 2 cut(s) 417, 438
MaeI CTAG 2 cut(s) 33, 84
MaeII ACGT 4 cut(s) 45, 433, 607, 689
MalI GATC 6 cut(s) 31, 153, 555, 593, 638, 745
MboI GATC 6 cut(s) 29, 151, 553, 591, 636, 743
MboII GAAGA 7 cut(s) 28, 169, 250, 354, 421, 436, 616
MfeI CAATTG 1 cut(s) 533
MflI RGATCY 4 cut(s) 29, 151, 636, 743
MhlI GDGCHC 3 cut(s) 25, 480, 588
MlsI TGGCCA 1 cut(s) 209
MluCI AATT 2 cut(s) 65, 533
MluNI TGGCCA 1 cut(s) 209
Mly113I GGCGCC 1 cut(s) 579
MlyI GAGTC 4 cut(s) 264, 432, 523, 715
MmeI TCCRAC 2 cut(s) 486, 672
Mox20I TGGCCA 1 cut(s) 209
MroI TCCGGA 1 cut(s) 261
MroNI GCCGGC 3 cut(s) 326, 330, 653
MscI TGGCCA 1 cut(s) 209
MseI TTAA 1 cut(s) 465
Msp20I TGGCCA 1 cut(s) 209
MspA1I CMGCKG 1 cut(s) 683
MspR9I CCNGG 6 cut(s) 226, 304, 563, 564, 715, 748
MunI CAATTG 1 cut(s) 533
MvnI CGCG 1 cut(s) 754
MwoI GCNNNNNNNGC 2 cut(s) 578, 683
NaeI GCCGGC 3 cut(s) 328, 332, 655
NarI GGCGCC 1 cut(s) 579
NciI CCSGG 6 cut(s) 226, 304, 563, 564, 715, 748
NdeII GATC 6 cut(s) 29, 151, 553, 591, 636, 743
NgoMIV GCCGGC 3 cut(s) 326, 330, 653
NlaIV GGNNCC 7 cut(s) 153, 510, 580, 598, 678, 700, 745
NmeAIII GCCGAG 3 cut(s) 537, 537, 607
NspV TTCGAA 1 cut(s) 63
PaeR7I CTCGAG 1 cut(s) 473
PceI AGGCCT 1 cut(s) 499
PcsI WCGNNNNNNNCGW 2 cut(s) 613, 702
PdiI GCCGGC 3 cut(s) 328, 332, 655
PfeI GAWTC 1 cut(s) 280
Pfl23II CGTACG 1 cut(s) 308
PinAI ACCGGT 1 cut(s) 187
PkrI GCNGC 3 cut(s) 57, 195, 685
Ple19I CGATCG 1 cut(s) 594
PleI GAGTC 4 cut(s) 263, 432, 522, 715
PluTI GGCGCC 1 cut(s) 582
PpsI GAGTC 4 cut(s) 263, 432, 522, 715
PshBI ATTAAT 1 cut(s) 465
Psp124BI GAGCTC 2 cut(s) 25, 480
PspLI CGTACG 1 cut(s) 308
PspN4I GGNNCC 7 cut(s) 153, 510, 580, 598, 678, 700, 745
PspPI GGNCC 5 cut(s) 324, 526, 560, 596, 716
PspXI VCTCGAGB 1 cut(s) 473
PsuI RGATCY 4 cut(s) 29, 151, 636, 743
PvuI CGATCG 1 cut(s) 594
PvuII CAGCTG 1 cut(s) 683
RigI GGCCGGCC 2 cut(s) 330, 334
RsaI GTAC 1 cut(s) 310
RsaNI GTAC 1 cut(s) 309
SacI GAGCTC 2 cut(s) 25, 480
SalI GTCGAC 1 cut(s) 435
SaqAI TTAA 1 cut(s) 465
SatI GCNGC 3 cut(s) 56, 194, 684
Sau3AI GATC 6 cut(s) 29, 151, 553, 591, 636, 743
Sau96I GGNCC 5 cut(s) 324, 526, 560, 596, 716
SchI GAGTC 4 cut(s) 264, 432, 523, 715
ScrFI CCNGG 6 cut(s) 226, 304, 563, 564, 715, 748
SduI GDGCHC 3 cut(s) 25, 480, 588
SfaNI GCATC 2 cut(s) 417, 438
SfoI GGCGCC 1 cut(s) 580
Sfr274I CTCGAG 1 cut(s) 473
SfuI TTCGAA 1 cut(s) 63
SgrAI CRCCGGYG 1 cut(s) 572
SinI GGWCC 1 cut(s) 596
SlaI CTCGAG 1 cut(s) 473
SmaI CCCGGG 1 cut(s) 564
SmlI CTYRAG 1 cut(s) 473
SmoI CTYRAG 1 cut(s) 473
Sse9I AATT 2 cut(s) 65, 533
SseBI AGGCCT 1 cut(s) 499
SsiI CCGC 6 cut(s) 56, 144, 217, 269, 663, 754
SspDI GGCGCC 1 cut(s) 578
SspMI CTAG 2 cut(s) 33, 84
SstI GAGCTC 2 cut(s) 25, 480
StuI AGGCCT 1 cut(s) 499
StyD4I CCNGG 6 cut(s) 224, 302, 561, 562, 713, 746
StyI CCWWGG 1 cut(s) 147
TaiI ACGT 4 cut(s) 48, 436, 610, 692
TaqII GACCGA 2 cut(s) 492, 584
TasI AATT 2 cut(s) 65, 533
TauI GCSGC 1 cut(s) 58
TfiI GAWTC 1 cut(s) 280
Tru1I TTAA 1 cut(s) 465
Tru9I TTAA 1 cut(s) 465
TseI GCWGC 2 cut(s) 193, 683
TspDTI ATGAA 1 cut(s) 413
TspGWI ACGGA 2 cut(s) 38, 501
TspMI CCCGGG 1 cut(s) 562
VpaK11BI GGWCC 1 cut(s) 596
VspI ATTAAT 1 cut(s) 465
XhoI CTCGAG 1 cut(s) 473
XmaI CCCGGG 1 cut(s) 562
XmiI GTMKAC 1 cut(s) 436
XspI CTAG 2 cut(s) 33, 84
Using CommOnly database (standard laboratory enzymes). Scanned on CDS sequence.