Tetratricopeptide repeat
Download the Full Tree (.nwk) file, then upload it to any of the following tools to customize colors, fonts, annotations, clades, and branch support.
| Species | Orthologous Gene IDs |
|---|---|
| arabidopsis_thaliana | AT5G49330 |
| pyrus_communis | pycom15g04920 |
| rosa_chinensis | RchiOBHm_Chr3g0473591 |
| rosa_laevigata | RLG00000024002 |
| rosa_multiflora | Rmu_ssc0000322.1_g000028 |
| rosa_roxburghii | Rroxscaffold_2G00130480 Rroxscaffold_3G00255700 Rroxscaffold_6G00408040 Rroxscaffold_7G00194780 |
| rosa_samantha | Rh1DG328800 Rh2AG274100 Rh6AG192700 Rh7DG192700 |
| Enzyme | Recognition Site | Cut Count | Positions (bp) |
|---|---|---|---|
| AanI | TTATAA | 1 cut(s) | 201 |
| AcsI | RAATTY | 1 cut(s) | 348 |
| AcuI | CTGAAG | 1 cut(s) | 380 |
| AfiI | CCNNNNNNNGG | 2 cut(s) | 133, 312 |
| AgeI | ACCGGT | 1 cut(s) | 305 |
| AgsI | TTSAA | 3 cut(s) | 79, 268, 394 |
| AjuI | GAANNNNNNNTTGG | 2 cut(s) | 47, 79 |
| AluBI | AGCT | 4 cut(s) | 32, 172, 282, 302 |
| AluI | AGCT | 4 cut(s) | 32, 172, 282, 302 |
| AoxI | GGCC | 1 cut(s) | 135 |
| ApoI | RAATTY | 1 cut(s) | 348 |
| AsiGI | ACCGGT | 1 cut(s) | 305 |
| AxyI | CCTNAGG | 1 cut(s) | 39 |
| BbsI | GAAGAC | 1 cut(s) | 252 |
| BccI | CCATC | 1 cut(s) | 363 |
| BclI | TGATCA | 1 cut(s) | 160 |
| BfaI | CTAG | 2 cut(s) | 23, 275 |
| BfmI | CTRYAG | 1 cut(s) | 238 |
| BpiI | GAAGAC | 1 cut(s) | 252 |
| BplI | GAGNNNNNCTC | 2 cut(s) | 125, 157 |
| BpuEI | CTTGAG | 3 cut(s) | 152, 274, 317 |
| BsaWI | WCCGGW | 1 cut(s) | 305 |
| Bsc4I | CCNNNNNNNGG | 2 cut(s) | 133, 312 |
| Bse118I | RCCGGY | 1 cut(s) | 305 |
| Bse21I | CCTNAGG | 1 cut(s) | 39 |
| BseGI | GGATG | 1 cut(s) | 322 |
| BseLI | CCNNNNNNNGG | 2 cut(s) | 133, 312 |
| BseMII | CTCAG | 1 cut(s) | 30 |
| BshFI | GGCC | 1 cut(s) | 137 |
| BshTI | ACCGGT | 1 cut(s) | 305 |
| BsiSI | CCGG | 1 cut(s) | 306 |
| BslFI | GGGAC | 1 cut(s) | 40 |
| BslI | CCNNNNNNNGG | 2 cut(s) | 133, 312 |
| BsmFI | GGGAC | 1 cut(s) | 40 |
| BsnI | GGCC | 1 cut(s) | 137 |
| Bsp143I | GATC | 2 cut(s) | 113, 160 |
| BspANI | GGCC | 1 cut(s) | 137 |
| BspCNI | CTCAG | 1 cut(s) | 31 |
| BspMAI | CTGCAG | 1 cut(s) | 242 |
| BsrFI | RCCGGY | 1 cut(s) | 305 |
| BssAI | RCCGGY | 1 cut(s) | 305 |
| BssMI | GATC | 2 cut(s) | 113, 160 |
| BstDEI | CTNAG | 1 cut(s) | 39 |
| BstENI | CCTNNNNNAGG | 1 cut(s) | 131 |
| BstF5I | GGATG | 1 cut(s) | 322 |
| BstKTI | GATC | 2 cut(s) | 116, 163 |
| BstMBI | GATC | 2 cut(s) | 113, 160 |
| BstSFI | CTRYAG | 1 cut(s) | 238 |
| BstV2I | GAAGAC | 1 cut(s) | 252 |
| Bsu36I | CCTNAGG | 1 cut(s) | 39 |
| BsuRI | GGCC | 1 cut(s) | 137 |
| BtsCI | GGATG | 1 cut(s) | 322 |
| BtsI | GCAGTG | 1 cut(s) | 247 |
| BtsIMutI | CAGTG | 1 cut(s) | 247 |
| Cfr10I | RCCGGY | 1 cut(s) | 305 |
| CspAI | ACCGGT | 1 cut(s) | 305 |
| CviAII | CATG | 1 cut(s) | 146 |
| CviJI | RGCY | 8 cut(s) | 22, 32, 68, 110, 137, 172, 282, 302 |
| CviKI_1 | RGCY | 8 cut(s) | 22, 32, 68, 110, 137, 172, 282, 302 |
| DdeI | CTNAG | 1 cut(s) | 39 |
| DpnI | GATC | 2 cut(s) | 115, 162 |
| DpnII | GATC | 2 cut(s) | 113, 160 |
| Eco57I | CTGAAG | 1 cut(s) | 380 |
| Eco81I | CCTNAGG | 1 cut(s) | 39 |
| EcoNI | CCTNNNNNAGG | 1 cut(s) | 131 |
| EcoT22I | ATGCAT | 1 cut(s) | 373 |
| FaeI | CATG | 1 cut(s) | 149 |
| FaiI | YATR | 7 cut(s) | 147, 152, 191, 201, 251, 299, 327 |
| FaqI | GGGAC | 1 cut(s) | 40 |
| FatI | CATG | 1 cut(s) | 145 |
| FbaI | TGATCA | 1 cut(s) | 160 |
| FokI | GGATG | 1 cut(s) | 329 |
| FspBI | CTAG | 2 cut(s) | 23, 275 |
| HaeIII | GGCC | 1 cut(s) | 137 |
| HapII | CCGG | 1 cut(s) | 306 |
| Hin1II | CATG | 1 cut(s) | 149 |
| HincII | GTYRAC | 1 cut(s) | 409 |
| HindII | GTYRAC | 1 cut(s) | 409 |
| HindIII | AAGCTT | 1 cut(s) | 170 |
| HinfI | GANTC | 1 cut(s) | 401 |
| HpaI | GTTAAC | 1 cut(s) | 409 |
| HpaII | CCGG | 1 cut(s) | 306 |
| Hpy166II | GTNNAC | 1 cut(s) | 409 |
| Hpy188I | TCNGA | 2 cut(s) | 99, 360 |
| Hpy188III | TCNNGA | 1 cut(s) | 334 |
| Hpy8I | GTNNAC | 1 cut(s) | 409 |
| HpyAV | CCTTC | 1 cut(s) | 54 |
| HpyCH4V | TGCA | 3 cut(s) | 4, 240, 371 |
| HpyF3I | CTNAG | 1 cut(s) | 39 |
| Hsp92II | CATG | 1 cut(s) | 149 |
| Ksp22I | TGATCA | 1 cut(s) | 160 |
| KspAI | GTTAAC | 1 cut(s) | 409 |
| Kzo9I | GATC | 2 cut(s) | 113, 160 |
| LpnPI | CCDG | 5 cut(s) | 51, 72, 124, 180, 319 |
| MaeI | CTAG | 2 cut(s) | 23, 275 |
| MalI | GATC | 2 cut(s) | 115, 162 |
| MboI | GATC | 2 cut(s) | 113, 160 |
| MboII | GAAGA | 3 cut(s) | 26, 257, 373 |
| MfeI | CAATTG | 1 cut(s) | 5 |
| MluCI | AATT | 7 cut(s) | 5, 165, 213, 231, 268, 337, 348 |
| MmeI | TCCRAC | 1 cut(s) | 290 |
| MnlI | CCTC | 5 cut(s) | 3, 34, 127, 137, 306 |
| Mph1103I | ATGCAT | 1 cut(s) | 373 |
| MseI | TTAA | 5 cut(s) | 168, 212, 230, 284, 408 |
| MspI | CCGG | 1 cut(s) | 306 |
| MunI | CAATTG | 1 cut(s) | 5 |
| NdeII | GATC | 2 cut(s) | 113, 160 |
| NlaIII | CATG | 1 cut(s) | 149 |
| NsiI | ATGCAT | 1 cut(s) | 373 |
| PfeI | GAWTC | 1 cut(s) | 401 |
| PinAI | ACCGGT | 1 cut(s) | 305 |
| PsiI | TTATAA | 1 cut(s) | 201 |
| PstI | CTGCAG | 1 cut(s) | 242 |
| SaqAI | TTAA | 5 cut(s) | 168, 212, 230, 284, 408 |
| Sau3AI | GATC | 2 cut(s) | 113, 160 |
| SetI | ASST | 6 cut(s) | 34, 65, 129, 174, 284, 304 |
| SfcI | CTRYAG | 1 cut(s) | 238 |
| SmlI | CTYRAG | 3 cut(s) | 131, 289, 332 |
| SmoI | CTYRAG | 3 cut(s) | 131, 289, 332 |
| Sse9I | AATT | 7 cut(s) | 5, 165, 213, 231, 268, 337, 348 |
| SspMI | CTAG | 2 cut(s) | 23, 275 |
| TasI | AATT | 7 cut(s) | 5, 165, 213, 231, 268, 337, 348 |
| TfiI | GAWTC | 1 cut(s) | 401 |
| Tru1I | TTAA | 5 cut(s) | 168, 212, 230, 284, 408 |
| Tru9I | TTAA | 5 cut(s) | 168, 212, 230, 284, 408 |
| TscAI | CASTG | 1 cut(s) | 247 |
| TspDTI | ATGAA | 3 cut(s) | 275, 333, 342 |
| TspRI | CASTG | 1 cut(s) | 247 |
| XagI | CCTNNNNNAGG | 1 cut(s) | 131 |
| XapI | RAATTY | 1 cut(s) | 348 |
| XspI | CTAG | 2 cut(s) | 23, 275 |
| Zsp2I | ATGCAT | 1 cut(s) | 373 |